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Non-covalent Interaction 2.0

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Materials Science".

Deadline for manuscript submissions: closed (30 January 2024) | Viewed by 2238

Special Issue Editors


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Guest Editor
1. Laboratory of Structural and Computational Physical-Chemistry for Nanosciences and QSAR, Biology-Chemistry Department, West University of Timisoara, Str. Pestalozzi 16, 300115 Timisoara, Romania
2. Laboratory of Renewable Energies-Photovoltaics, R&D National Institute for Electrochemistry and Condensed Matter–INCEMC–Timisoara, Str. Dr. Aurel Podeanu 144, 300569 Timișoara, Romania
Interests: quantum physical chemistry; nanochemistry; reactivity indices and principles; electronegativity; density functional theory; path integrals; enzyme kinetics; QSAR; epistemology and philosophy of science
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Guest Editor
National Institute for Research and Development of Isotopic and Molecular Technologies, Donat Street, No. 67-103, 400283 Cluj-Napoca, Romania
Interests: intermolecular interactions; self-assembled supramolecular systems; laser-molecule interaction; molecular excited states; biopolymers
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Although the field of research on non-covalent interactions involves long periods of scientific research and operates with mature theoretical models, we believe that there are special areas that we still consider worthwhile to study in-depth. Of these, it is important to mention metal–lone pair electron orbital interactions in metal–organic complexes, the halogen bond formed between metal halides and electron-rich organic units, intermolecular interaction between molecular fragments in electronic excited state configurations, or long-range interactions that include higher-order nonadditive many-body Van der Waals (vdW) energy contributions. Although there are well-developed theoretical models which can accurately describe the nature of intermolecular interactions, most of them based on wavefunction methods, there are still cases where, for example, density-based methods such as DFT (density functional theory) cannot be effectively handled using this theory. In this regard, there is still a need to develop efficient exchange correlation functionals that can accurately reproduce the results obtained with high-level electron correlation theories. At the same time, it is important to mention recently developed methods such as the machine learning technique, which we believe can be effectively used to more accurately parameterize the various intermolecular interaction potentials used in classical molecular dynamic studies.

This Special Issue is intended to provide a common platform for experimental and modeling science in order to gain a more comprehensive picture of these non-covalent interactions. Both original research articles and reviews in the fields of molecular self-assembly, crystal design, the adsorption of ensemble molecules on a surface or interface, and intermolecular interaction theories are welcome.

Prof. Dr. Mihai V. Putz
Dr. Attila Bende
Guest Editors

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Keywords

  • non-covalent interactions
  • high-order electron correlation
  • density functional theory
  • halogen bond
  • machine learning techniques
  • molecular self-assembly
  • metal–organic complex
  • electronic excited state
  • surface adsorption

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Published Papers (2 papers)

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Research

14 pages, 7284 KiB  
Article
On the Intermolecular Interactions in Thiophene-Cored Single-Stacking Junctions
by Jiří Czernek and Jiří Brus
Int. J. Mol. Sci. 2023, 24(17), 13349; https://doi.org/10.3390/ijms241713349 - 28 Aug 2023
Cited by 1 | Viewed by 911
Abstract
There have been attempts, both experimental and based on density-functional theory (DFT) modeling, at understanding the factors that govern the electronic conductance behavior of single-stacking junctions formed by pi-conjugated materials in nanogaps. Here, a reliable description of relevant stacked configurations of some thiophene-cored [...] Read more.
There have been attempts, both experimental and based on density-functional theory (DFT) modeling, at understanding the factors that govern the electronic conductance behavior of single-stacking junctions formed by pi-conjugated materials in nanogaps. Here, a reliable description of relevant stacked configurations of some thiophene-cored systems is provided by means of high-level quantum chemical approaches. The minimal structures of these configurations, which are found using the dispersion-corrected DFT approach, are employed in calculations that apply the coupled cluster method with singles, doubles and perturbative triples [CCSD(T)] and extrapolations to the complete basis set (CBS) limit in order to reliably quantify the strength of intermolecular binding, while their physical origin is investigated using the DFT-based symmetry-adapted perturbation theory (SAPT) of intermolecular interactions. In particular, for symmetrized S-Tn dimers (where “S” and “T” denote a thiomethyl-containing anchor group and a thiophene segment comprising “n” units, respectively), the CCSD(T)/CBS interaction energies are found to increase linearly with n ≤ 6, and significant conformational differences between the flanking 2-thiophene group in S-T1 and S-T2 are described by the CCSD(T)/CBS and SAPT/CBS computations. These results are put into the context of previous work on charge transport properties of S-Tn and other types of supramolecular junctions. Full article
(This article belongs to the Special Issue Non-covalent Interaction 2.0)
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16 pages, 3306 KiB  
Article
Specific Proton-Donor Properties of Glycine Betaine. Metric Parameters and Enthalpy of Noncovalent Interactions in its Dimer, Water Complexes and Crystalline Hydrate
by Nikita E. Frolov, Anastasia V. Shishkina and Mikhail V. Vener
Int. J. Mol. Sci. 2023, 24(16), 12971; https://doi.org/10.3390/ijms241612971 - 19 Aug 2023
Viewed by 869
Abstract
Trimethylglycine (glycine betaine, GB) is an important organic osmolyte that accumulates in various plant species in response to environmental stresses and has significant potential as a bioactive agent with low environmental impact. It is assumed that the hydration of GB is playing an [...] Read more.
Trimethylglycine (glycine betaine, GB) is an important organic osmolyte that accumulates in various plant species in response to environmental stresses and has significant potential as a bioactive agent with low environmental impact. It is assumed that the hydration of GB is playing an important role in the protective mechanism. The hydration and aggregation properties of GB have not yet been studied in detail at the atomistic level. In this work, noncovalent interactions in the GB dimer and its complexes with water and crystalline monohydrate are studied. Depending on the object, periodic and non-periodic DFT calculations are used. Particular attention is paid to the metric parameters and enthalpies of intermolecular hydrogen bonds. The identification of noncovalent interactions is carried out by means of the Bader analysis of periodic or non-periodic electron density. The enthalpy of hydrogen bonds is estimated using the Rosenberg formula (PCCP 2 (2000) 2699). The specific proton donor properties of glycine betaine are due to its ability to form intermolecular C–H∙∙∙O bonds with the oxygen atom of a water molecule or the carboxylate group of a neighboring GB. The enthalpy of these bonds can be significantly greater than 10 kJ/mol. The water molecule that forms a hydrogen bond with the carboxylate group of GB also interacts with its CH groups through lone pairs of electrons. The C–H∙∙∙O bonds contribute up to 40% of the total entropy of the GB–water interaction, which is about 45 kJ/mol. The possibility of identifying C–H∙∙∙O bonds by the proton nuclear magnetic resonance method is discussed. Full article
(This article belongs to the Special Issue Non-covalent Interaction 2.0)
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