Rhizosphere Microbiome Co-Occurrence Network Analysis across a Tomato Domestication Gradient
Abstract
:1. Introduction
2. Materials and Methods
2.1. Plant and Soil Selection
2.2. Tomato Growth Conditions
2.3. Collection and DNA Extraction of Rhizosphere Soil Samples
2.4. PCR and minION Sequencing Conditions
2.5. Co-Occurrence Network Generation
2.6. Data Analysis
3. Results
3.1. Soil Bacterial Community Interactions and Functionality
3.2. Tomato Domestication Influence on Soil Bacterial Interrelationships
4. Discussion
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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Dixon, M.M.; Afkairin, A.; Manter, D.K.; Vivanco, J. Rhizosphere Microbiome Co-Occurrence Network Analysis across a Tomato Domestication Gradient. Microorganisms 2024, 12, 1756. https://doi.org/10.3390/microorganisms12091756
Dixon MM, Afkairin A, Manter DK, Vivanco J. Rhizosphere Microbiome Co-Occurrence Network Analysis across a Tomato Domestication Gradient. Microorganisms. 2024; 12(9):1756. https://doi.org/10.3390/microorganisms12091756
Chicago/Turabian StyleDixon, Mary M., Antisar Afkairin, Daniel K. Manter, and Jorge Vivanco. 2024. "Rhizosphere Microbiome Co-Occurrence Network Analysis across a Tomato Domestication Gradient" Microorganisms 12, no. 9: 1756. https://doi.org/10.3390/microorganisms12091756