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Article

Simple but Effective Knowledge-Based Query Reformulations for Precision Medicine Retrieval

by
Stefano Marchesin
1,
Giorgio Maria Di Nunzio
1,2,* and
Maristella Agosti
1
1
Department of Information Engineering, University of Padua, 35122 Padova, Italy
2
Department of Mathematics, University of Padua, 35122 Padova, Italy
*
Author to whom correspondence should be addressed.
Information 2021, 12(10), 402; https://doi.org/10.3390/info12100402
Submission received: 29 August 2021 / Revised: 24 September 2021 / Accepted: 24 September 2021 / Published: 29 September 2021
(This article belongs to the Section Information Systems)

Abstract

In Information Retrieval (IR), the semantic gap represents the mismatch between users’ queries and how retrieval models answer to these queries. In this paper, we explore how to use external knowledge resources to enhance bag-of-words representations and reduce the effect of the semantic gap between queries and documents. In this regard, we propose several simple but effective knowledge-based query expansion and reduction techniques, and we evaluate them for the medical domain. The query reformulations proposed are used to increase the probability of retrieving relevant documents through the addition to, or the removal from, the original query of highly specific terms. The experimental analyses on different test collections for Precision Medicine IR show the effectiveness of the developed techniques. In particular, a specific subset of query reformulations allow retrieval models to achieve top performing results in all the considered test collections.
Keywords: information retrieval; clinical trials; knowledge base; medical literature; precision medicine; query reformulation; semantic gap information retrieval; clinical trials; knowledge base; medical literature; precision medicine; query reformulation; semantic gap

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MDPI and ACS Style

Marchesin, S.; Di Nunzio, G.M.; Agosti, M. Simple but Effective Knowledge-Based Query Reformulations for Precision Medicine Retrieval. Information 2021, 12, 402. https://doi.org/10.3390/info12100402

AMA Style

Marchesin S, Di Nunzio GM, Agosti M. Simple but Effective Knowledge-Based Query Reformulations for Precision Medicine Retrieval. Information. 2021; 12(10):402. https://doi.org/10.3390/info12100402

Chicago/Turabian Style

Marchesin, Stefano, Giorgio Maria Di Nunzio, and Maristella Agosti. 2021. "Simple but Effective Knowledge-Based Query Reformulations for Precision Medicine Retrieval" Information 12, no. 10: 402. https://doi.org/10.3390/info12100402

APA Style

Marchesin, S., Di Nunzio, G. M., & Agosti, M. (2021). Simple but Effective Knowledge-Based Query Reformulations for Precision Medicine Retrieval. Information, 12(10), 402. https://doi.org/10.3390/info12100402

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