Biology

20 pages, 1036 KiB

Open AccessReview

Exploring Rosiglitazone’s Potential to Treat Alzheimer’s Disease through the Modulation of Brain-Derived Neurotrophic Factor

by Mackayla L. Nelson, Julia A. Pfeifer, Jordan P. Hickey, Andrila E. Collins and Bettina E. Kalisch

Biology 2023, 12(7), 1042; https://doi.org/10.3390/biology12071042 - 24 Jul 2023

Cited by 6 | Viewed by 2435

Abstract

Alzheimer’s disease (AD) is a progressive neurodegenerative disorder that debilitates over 55 million individuals worldwide. Currently, treatments manage and alleviate its symptoms; however, there is still a need to find a therapy that prevents or halts disease progression. Since AD has been labeled [...] Read more.

Alzheimer’s disease (AD) is a progressive neurodegenerative disorder that debilitates over 55 million individuals worldwide. Currently, treatments manage and alleviate its symptoms; however, there is still a need to find a therapy that prevents or halts disease progression. Since AD has been labeled as “type 3 diabetes” due to its similarity in pathological hallmarks, molecular pathways, and comorbidity with type 2 diabetes mellitus (T2DM), there is growing interest in using anti-diabetic drugs for its treatment. Rosiglitazone (RSG) is a peroxisome proliferator-activated receptor-gamma agonist that reduces hyperglycemia and hyperinsulinemia and improves insulin signaling. In cellular and rodent models of T2DM-associated cognitive decline and AD, RSG has been reported to improve cognitive impairment and reverse AD-like pathology; however, results from human clinical trials remain consistently unsuccessful. RSG has also been reported to modulate the expression of brain-derived neurotrophic factor (BDNF), a protein that regulates neuroplasticity and energy homeostasis and is implicated in both AD and T2DM. The present review investigates RSG’s limitations and potential therapeutic benefits in pre-clinical models of AD through its modulation of BDNF expression. Full article

(This article belongs to the Special Issue Roles and Functions of Neurotrophins and Their Receptors in the Brain)

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10 pages, 1271 KiB

Open AccessArticle

Targeted Glutamate Supply Boosts Insulin Concentrations, Ovarian Activity, and Ovulation Rate in Yearling Goats during the Anestrous Season

by Luis A. Luna-Garcia, Cesar A. Meza-Herrera, Carlos C. Perez-Marin, Angeles De Santiago-Miramontes, Jessica M. Flores-Salas, Rebeca Corona, Guadalupe Calderon-Leyva, Francisco G. Veliz-Deras, Cayetano Navarrete-Molina and Ruben I. Marin-Tinoco

Biology 2023, 12(7), 1041; https://doi.org/10.3390/biology12071041 - 24 Jul 2023

Viewed by 1411

Abstract

The neuroendocrine regulation of the seasonal reproductive axis requires the integration of internal and external signals to ensure synchronized physiological and behavioral responses. Seasonal reproductive changes contribute to intermittent production, which poses challenges for optimizing goat product yields. Consequently, a significant objective in [...] Read more.

The neuroendocrine regulation of the seasonal reproductive axis requires the integration of internal and external signals to ensure synchronized physiological and behavioral responses. Seasonal reproductive changes contribute to intermittent production, which poses challenges for optimizing goat product yields. Consequently, a significant objective in seasonal reproduction research is to attain continuous reproduction and enhance profitability in goat farming. Glutamate plays a crucial role as a modulator in several reproductive and metabolic processes. Hence, the aim of this study was to evaluate the potential impact of exogenous glutamate administration on serum insulin concentration and ovarian function during the out-of-season period in yearling goats. During the anestrous season, animals were randomly located in individual pens to form two experimental groups: (1) glutamate (n = 10, live weight (LW) = 29.1 ± 1.02 kg, body condition score (BCS) = 3.4 ± 0.2 units) and (2) control (n = 10; LW = 29.2 ± 1.07 kg, BCS = 3.5 ± 0.2), with no differences (p < 0.05) regarding LW and BCS. Then, goats were estrus-synchronized, and blood sampling was carried out for insulin quantification. Ovaries were ultrasonographically scanned to assess ovulation rate (OR), number of antral follicles (AFs), and total ovarian activity (TOA = OR + AF). The research outcomes support our working hypothesis. Certainly, our study confirms that those yearling goats treated with exogenous glutamate displayed the largest (p < 0.05) insulin concentrations across time as well as an augmented (p < 0.05) out-of-season ovarian activity. Full article

(This article belongs to the Section Developmental and Reproductive Biology)

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12 pages, 5480 KiB

Open AccessArticle

Global Potential Geographical Distribution of the Southern Armyworm (Spodoptera eridania) under Climate Change

by Yu Zhang, Haoxiang Zhao, Yuhan Qi, Ming Li, Nianwan Yang, Jianyang Guo, Xiaoqing Xian and Wanxue Liu

Biology 2023, 12(7), 1040; https://doi.org/10.3390/biology12071040 - 23 Jul 2023

Cited by 2 | Viewed by 1862

Abstract

The southern armyworm (Spodoptera eridania), a polyphagous crop pest native to tropical America, has been found in Africa (2016) and India (2019), causing defoliation and damage to the reproductive structures of cassava, soybean, and tomato. The damage caused by this pest [...] Read more.

The southern armyworm (Spodoptera eridania), a polyphagous crop pest native to tropical America, has been found in Africa (2016) and India (2019), causing defoliation and damage to the reproductive structures of cassava, soybean, and tomato. The damage caused by this pest to crop systems has raised concerns regarding its potential risks. Therefore, we predicted the potential geographical distribution of S. eridania under climate change conditions using 19 bioclimatic variables based on an optimized MaxEnt model. The results showed that annual precipitation (bio12), mean temperature of the warmest quarter (bio10), and precipitation of the driest month (bio14) were important bioclimatic variables influencing the potential distribution. The prediction showed that the suitable habitat area was approximately 3426.43 × 10⁴ km², mainly concentrated in southern North America, South America, western Europe, central Africa, southern Asia, and eastern Oceania. In response to global climate change, suitable habitats for S. eridania will expand and shift to higher latitudes in the future, especially under the SSP5-8.5 scenario. Because of the current devastating effects on crop production, countries without S. eridania invasion, such as the European Union, Southeast Asian countries, and Australia, need to strengthen phytosanitary measures at border ports to prevent the introduction of this pest. Full article

(This article belongs to the Special Issue Facilitation of Invasive Crop Pests via Climate Change: From Evidence to Mechanisms)

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26 pages, 17844 KiB

Open AccessArticle

Fluid Osmolarity Modulates the Rate of Spontaneous Contraction of Lymphatic Vessels and Lymph Flow by Means of a Cooperation between TRPV and VRAC Channels

by Eleonora Solari, Cristiana Marcozzi, Daniela Negrini and Andrea Moriondo

Biology 2023, 12(7), 1039; https://doi.org/10.3390/biology12071039 - 23 Jul 2023

Cited by 1 | Viewed by 1611

Abstract

Lymphatic vessels are capable of sustaining lymph formation and propulsion via an intrinsic mechanism based on the spontaneous contraction of the lymphatic muscle in the wall of lymphatic collectors. Exposure to a hyper- or hypo-osmolar environment can deeply affect the intrinsic contraction rate [...] Read more.

Lymphatic vessels are capable of sustaining lymph formation and propulsion via an intrinsic mechanism based on the spontaneous contraction of the lymphatic muscle in the wall of lymphatic collectors. Exposure to a hyper- or hypo-osmolar environment can deeply affect the intrinsic contraction rate and therefore alter lymph flow. In this work, we aimed at defining the putative receptors underlying such a response. Functional experiments were conducted in ex vivo rat diaphragmatic specimens containing spontaneously contracting lymphatic vessels that were exposed to either hyper- or hypo-osmolar solutions. Lymphatics were challenged with blockers to TRPV4, TRPV1, and VRAC channels, known to respond to changes in osmolarity and/or cell swelling and expressed by lymphatic vessels. Results show that the normal response to a hyperosmolar environment is a steady decrease in the contraction rate and lymph flow and can be prevented by blocking TRPV1 channels with capsazepine. The response to a hyposmolar environment consists of an early phase of an increase in the contraction rate, followed by a decrease. The early phase is abolished by blocking VRACs with DCPIB, while blocking TRPV4 mainly resulted in a delay of the early response. Overall, our data suggest that the cooperation of the three channels can shape the response of lymphatic vessels in terms of contraction frequency and lymph flow, with a prominent role of TRPV1 and VRACs. Full article

(This article belongs to the Special Issue Physiology of Lymph Vessels: Structure, Function, Modelling, and Clinical Perspectives)

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27 pages, 1342 KiB

Open AccessReview

Genetic Markers for Metabarcoding of Freshwater Microalgae: Review

by Elena Kezlya, Natalia Tseplik and Maxim Kulikovskiy

Biology 2023, 12(7), 1038; https://doi.org/10.3390/biology12071038 - 22 Jul 2023

Cited by 12 | Viewed by 4187

Abstract

The metabarcoding methods for studying the diversity of freshwater microalgae and routine biomonitoring are actively used in modern research. A lot of experience has been accumulated already, and many methodological questions have been solved (such as the influence of the methods and time [...] Read more.

The metabarcoding methods for studying the diversity of freshwater microalgae and routine biomonitoring are actively used in modern research. A lot of experience has been accumulated already, and many methodological questions have been solved (such as the influence of the methods and time of sample conservation, DNA extraction and bioinformatical processing). The reproducibility of the method has been tested and confirmed. However, one of the main problems—choosing a genetic marker for the study—still lacks a clear answer. We analyzed 70 publications and found out that studies on eukaryotic freshwater microalgae use 12 markers (different nuclear regions 18S and ITS and plastids rbcL, 23S and 16S). Each marker has its peculiarities; they amplify differently and have various levels of efficiency (variability) in different groups of algae. The V4 and V9 18S and rbcL regions are used most often. We concentrated especially on the studies that compare the results of using different markers and microscopy. We summarize the data on the primers for each region and on how the choice of a marker affects the taxonomic composition of a community. Full article

(This article belongs to the Special Issue Aquatic Biodiversity and Ecosystem Multifunctionality in Response to Environmental Changes)

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28 pages, 988 KiB

Open AccessReview

Recent Developments in CRISPR/Cas9 Genome-Editing Technology Related to Plant Disease Resistance and Abiotic Stress Tolerance

by İbrahim Erdoğan, Birsen Cevher-Keskin, Özlem Bilir, Yiguo Hong and Mahmut Tör

Biology 2023, 12(7), 1037; https://doi.org/10.3390/biology12071037 - 22 Jul 2023

Cited by 17 | Viewed by 8460

Abstract

The revolutionary CRISPR/Cas9 genome-editing technology has emerged as a powerful tool for plant improvement, offering unprecedented precision and efficiency in making targeted gene modifications. This powerful and practical approach to genome editing offers tremendous opportunities for crop improvement, surpassing the capabilities of conventional [...] Read more.

The revolutionary CRISPR/Cas9 genome-editing technology has emerged as a powerful tool for plant improvement, offering unprecedented precision and efficiency in making targeted gene modifications. This powerful and practical approach to genome editing offers tremendous opportunities for crop improvement, surpassing the capabilities of conventional breeding techniques. This article provides an overview of recent advancements and challenges associated with the application of CRISPR/Cas9 in plant improvement. The potential of CRISPR/Cas9 in terms of developing crops with enhanced resistance to biotic and abiotic stresses is highlighted, with examples of genes edited to confer disease resistance, drought tolerance, salt tolerance, and cold tolerance. Here, we also discuss the importance of off-target effects and the efforts made to mitigate them, including the use of shorter single-guide RNAs and dual Cas9 nickases. Furthermore, alternative delivery methods, such as protein- and RNA-based approaches, are explored, and they could potentially avoid the integration of foreign DNA into the plant genome, thus alleviating concerns related to genetically modified organisms (GMOs). We emphasize the significance of CRISPR/Cas9 in accelerating crop breeding processes, reducing editing time and costs, and enabling the introduction of desired traits at the nucleotide level. As the field of genome editing continues to evolve, it is anticipated that CRISPR/Cas9 will remain a prominent tool for crop improvement, disease resistance, and adaptation to challenging environmental conditions. Full article

(This article belongs to the Section Plant Science)

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13 pages, 1616 KiB

Open AccessReview

Preserved Ophthalmic Anti-Allergy Medication in Cumulatively Increasing Risk Factors of Corneal Ectasia

by Tom Paterson, Serap Azizoglu, Moneisha Gokhale, Madeline Chambers and Cenk Suphioglu

Biology 2023, 12(7), 1036; https://doi.org/10.3390/biology12071036 - 22 Jul 2023

Cited by 1 | Viewed by 1390

Abstract

The prevalence of allergies is rising every year. For those who suffer from it, ocular inflammation and irritation can be inconvenient and unpleasant. Anti-allergy eyedrops are a readily available treatment for symptoms of ocular allergy (OA) and can help allergy sufferers regain normal [...] Read more.

The prevalence of allergies is rising every year. For those who suffer from it, ocular inflammation and irritation can be inconvenient and unpleasant. Anti-allergy eyedrops are a readily available treatment for symptoms of ocular allergy (OA) and can help allergy sufferers regain normal function. However, the eye is a delicate organ, and multiuse eyedrops often utilise preservatives to deter microbial growth. Preservatives such as benzalkonium chloride (BAK) have been shown to induce decreased cell viability. Therefore, during a period of high localised inflammation and eye rubbing, it is important that the preservatives used in topical medicines do not contribute to the weakening of the corneal structure. This review explores ocular allergy and the thinning and protrusion of the cornea that is characteristic of the disease keratoconus (KC) and how it relates to a weakened corneal structure. It also describes the use of BAK and its documented effects on the integrity of the cornea. It was found that atopy and eye rubbing are significant risk factors for KC, and BAK can severely decrease the integrity of the corneal structure when compared to other preservatives and preservative-free alternatives. Full article

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15 pages, 1106 KiB

Open AccessReview

Dissecting the Protective Effect of CD8⁺ T Cells in Response to SARS-CoV-2 mRNA Vaccination and the Potential Link with Lymph Node CD8⁺ T Cells

by Mengfei Chen, Vanessa Venturi and C. Mee Ling Munier

Biology 2023, 12(7), 1035; https://doi.org/10.3390/biology12071035 - 22 Jul 2023

Cited by 7 | Viewed by 2767

Abstract

SARS-CoV-2 vaccines have played a crucial role in effectively reducing COVID-19 disease severity, with a new generation of vaccines that use messenger RNA (mRNA) technology being administered globally. Neutralizing antibodies have featured as the heroes of vaccine-induced immunity. However, vaccine-elicited CD8⁺ T [...] Read more.

SARS-CoV-2 vaccines have played a crucial role in effectively reducing COVID-19 disease severity, with a new generation of vaccines that use messenger RNA (mRNA) technology being administered globally. Neutralizing antibodies have featured as the heroes of vaccine-induced immunity. However, vaccine-elicited CD8⁺ T cells may have a significant impact on the early protective effects of the mRNA vaccine, which are evident 12 days after initial vaccination. Vaccine-induced CD8⁺ T cells have been shown to respond to multiple epitopes of SARS-CoV-2 and exhibit polyfunctionality in the periphery at the early stage, even when neutralizing antibodies are scarce. Furthermore, SARS-CoV-2 mRNA vaccines induce diverse subsets of memory CD8⁺ T cells that persist for more than six months following vaccination. However, the protective role of CD8⁺ T cells in response to the SARS-CoV-2 mRNA vaccines remains a topic of debate. In addition, our understanding of CD8⁺ T cells in response to vaccination in the lymph nodes, where they first encounter antigen, is still limited. This review delves into the current knowledge regarding the protective role of polyfunctional CD8⁺ T cells in controlling the virus, the response to SARS-CoV-2 mRNA vaccines, and the contribution to supporting B cell activity and promoting immune protection in the lymph nodes. Full article

(This article belongs to the Section Immunology)

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30 pages, 6992 KiB

Open AccessArticle

Range Dynamics of Striped Field Mouse (Apodemus agrarius) in Northern Eurasia under Global Climate Change Based on Ensemble Species Distribution Models

by Varos Petrosyan, Vladimir Dinets, Fedor Osipov, Natalia Dergunova and Lyudmila Khlyap

Biology 2023, 12(7), 1034; https://doi.org/10.3390/biology12071034 - 22 Jul 2023

Cited by 7 | Viewed by 3322

Abstract

The striped field mouse (Apodemus agrarius Pallas, 1771) is a widespread species in Northern Eurasia. It damages crops and carries zoonotic pathogens. Its current and future range expansion under climate change may negatively affect public health and the economy, warranting further research [...] Read more.

The striped field mouse (Apodemus agrarius Pallas, 1771) is a widespread species in Northern Eurasia. It damages crops and carries zoonotic pathogens. Its current and future range expansion under climate change may negatively affect public health and the economy, warranting further research to understand the ecological and invasive characteristics of the species. In our study, we used seven algorithms (GLM, GAM, GBS, FDA, RF, ANN, and MaxEnt) to develop robust ensemble species distribution models (eSDMs) under current (1970–2000) and future climate conditions derived from global circulation models (GCMs) for 2021–2040, 2041–2060, 2061–2080, and 2081–2100. Simulation of climate change included high-, medium-, and low-sensitivity GCMs under four scenarios (SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5). We analyzed the habitat suitability across GCMs and scenarios by constructing geographical ranges and calculating their centroids. The results showed that the range changes depended on both the sensitivity of GCMs and scenario. The main trends were range expansion to the northeast and partial loss of habitat in the steppe area. The striped field mouse may form a continuous range from Central Europe to East Asia, closing the range gap that has existed for 12 thousand years. We present 49 eSDMs for the current and future distribution of A. agrarius (for 2000–2100) with quantitative metrics (gain, loss, change) of the range dynamics under global climate change. The most important predictor variables determining eSDMs are mean annual temperature, mean diurnal range of temperatures, the highest temperature of the warmest month, annual precipitation, and precipitation in the coldest month. These findings could help limit the population of the striped field mouse and predict distribution of the species under global climate change. Full article

(This article belongs to the Section Zoology)

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29 pages, 1590 KiB

Open AccessReview

Transformer Architecture and Attention Mechanisms in Genome Data Analysis: A Comprehensive Review

by Sanghyuk Roy Choi and Minhyeok Lee

Biology 2023, 12(7), 1033; https://doi.org/10.3390/biology12071033 - 22 Jul 2023

Cited by 30 | Viewed by 13075

Abstract

The emergence and rapid development of deep learning, specifically transformer-based architectures and attention mechanisms, have had transformative implications across several domains, including bioinformatics and genome data analysis. The analogous nature of genome sequences to language texts has enabled the application of techniques that [...] Read more.

The emergence and rapid development of deep learning, specifically transformer-based architectures and attention mechanisms, have had transformative implications across several domains, including bioinformatics and genome data analysis. The analogous nature of genome sequences to language texts has enabled the application of techniques that have exhibited success in fields ranging from natural language processing to genomic data. This review provides a comprehensive analysis of the most recent advancements in the application of transformer architectures and attention mechanisms to genome and transcriptome data. The focus of this review is on the critical evaluation of these techniques, discussing their advantages and limitations in the context of genome data analysis. With the swift pace of development in deep learning methodologies, it becomes vital to continually assess and reflect on the current standing and future direction of the research. Therefore, this review aims to serve as a timely resource for both seasoned researchers and newcomers, offering a panoramic view of the recent advancements and elucidating the state-of-the-art applications in the field. Furthermore, this review paper serves to highlight potential areas of future investigation by critically evaluating studies from 2019 to 2023, thereby acting as a stepping-stone for further research endeavors. Full article

(This article belongs to the Special Issue Computational Methods in Biology Research)

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16 pages, 1475 KiB

Open AccessArticle

Direct-Current Electrical Field Stimulation of Patient-Derived Colorectal Cancer Cells

by Falko Lange, Katrin Porath, Tina Sellmann, Anne Einsle, Robert Jaster, Michael Linnebacher, Rüdiger Köhling and Timo Kirschstein

Biology 2023, 12(7), 1032; https://doi.org/10.3390/biology12071032 - 22 Jul 2023

Viewed by 1739

Abstract

Several cues for a directional migration of colorectal cancer cells were identified as being crucial in tumor progression. However, galvanotaxis, the directional migration in direct-current electrical fields, has not been investigated so far. Therefore, we asked whether direct-current electrical fields could be used [...] Read more.

Several cues for a directional migration of colorectal cancer cells were identified as being crucial in tumor progression. However, galvanotaxis, the directional migration in direct-current electrical fields, has not been investigated so far. Therefore, we asked whether direct-current electrical fields could be used to mobilize colorectal cancer cells along field vectors. For this purpose, five patient-derived low-passage cell lines were exposed to field strengths of 150–250 V/m in vitro, and migration along the field vectors was investigated. To further study the role of voltage-gated calcium channels on galvanotaxis and intracellular signaling pathways that are associated with migration of colorectal cancer cells, the cultures were exposed to selective inhibitors. In three out of five colorectal cancer cell lines, we found a preferred cathodal migration. The cellular integrity of the cells was not impaired by exposure of the cells to the selected field strengths. Galvanotaxis was sensitive to inhibition of voltage-gated calcium channels. Furthermore, signaling pathways such as AKT and MEK, but not STAT3, were also found to contribute to galvanotaxis in our in vitro model system. Overall, we identify electrical fields as an important contributor to the directional migration of colorectal cancer cells. Full article

(This article belongs to the Special Issue Morphological and Molecular Advances in Colorectal and Lung Cancers Biology)

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13 pages, 1979 KiB

Open AccessArticle

Doxorubicin Dose-Dependent Impact on Physiological Balance—A Holistic Approach in a Rat Model

by Ana I. Afonso, Ângela Amaro-Leal, Filipa Machado, Isabel Rocha and Vera Geraldes

Biology 2023, 12(7), 1031; https://doi.org/10.3390/biology12071031 - 22 Jul 2023

Cited by 5 | Viewed by 2654

Abstract

Doxorubicin (DOX) is commonly used in several chemotherapies to treat various cancers, but it is known to cause cardiotoxicity and cardiac symptoms. Autonomic dysfunction is thought to contribute to the cardiotoxic effects of DOX, but the specific dose required to disrupt homeostatic processes [...] Read more.

Doxorubicin (DOX) is commonly used in several chemotherapies to treat various cancers, but it is known to cause cardiotoxicity and cardiac symptoms. Autonomic dysfunction is thought to contribute to the cardiotoxic effects of DOX, but the specific dose required to disrupt homeostatic processes is still unclear and is influenced by numerous factors. This study aimed to investigate how the DOX dosage affects autonomic function and physiological parameters, to elucidate the neurocardiac mechanisms underlying the observed cardiovascular side effects. Wistar rats were treated with DOX for four weeks and divided into three dosing groups: DOX8 (2 mg/kg/week), DOX16 (4 mg/kg/week), and DOX20 (5 mg/kg/week). A control group received NaCl 0.9% saline (1 mL/kg/week). In an acute experiment, we recorded blood pressure (BP), electrocardiogram, heart rate (HR), and respiratory rate (RF). Baroreflex gain and chemoreflex sensitivity were calculated, and cardiac tissue was analyzed with picrosirius histochemistry to measure collagen content. Our results showed that the LF/HF ratio, indicative of autonomic activity, was altered along with hypotension and bradycardia at a cumulative DOX dose threshold of 16 mg/kg. We observed a positive correlation between DOX dose and BP, HR, urinary norepinephrine, LF/HF ratio, and fibrotic heart area. Lower LF/HF ratios were associated with high DOX doses, reflecting drug-induced impairment of autonomic control of HR. This study provides valuable insights into the dose-dependent effects of DOX on physiological parameters and the development of cardiovascular dysfunction. These findings are critical, which is important for optimizing the management and therapeutic strategies for patients undergoing DOX-based chemotherapy. Full article

(This article belongs to the Special Issue Cardiovascular Autonomic Function: From Bench to Bedside)

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17 pages, 3219 KiB

Open AccessArticle

Aging in Normotensive and Spontaneously Hypertensive Rats: Focus on Erythrocyte Properties

by Jana Radosinska, Marta Kollarova, Tomas Jasenovec, Dominika Radosinska, Norbert Vrbjar, Peter Balis and Angelika Puzserova

Biology 2023, 12(7), 1030; https://doi.org/10.3390/biology12071030 - 21 Jul 2023

Cited by 1 | Viewed by 1512

Abstract

Erythrocyte deformability, crucial for oxygen delivery to tissues, plays an important role in the etiology of various diseases. As the factor maintaining the erythrocyte deformability, nitric oxide (NO) has been identified. Reduced NO bioavailability also plays a role in the pathogenesis of hypertension. [...] Read more.

Erythrocyte deformability, crucial for oxygen delivery to tissues, plays an important role in the etiology of various diseases. As the factor maintaining the erythrocyte deformability, nitric oxide (NO) has been identified. Reduced NO bioavailability also plays a role in the pathogenesis of hypertension. Our aim was to determine whether aging and hypertension affect erythrocyte deformability and NO production by erythrocytes in experimental animals divided into six groups according to age (7, 20 and 52 weeks), labeled WKY-7, WKY-20 and WKY-52 for normotensive Wistar-Kyoto (WKY) rats, and SHR-7, SHR-20 and SHR-52 for spontaneously hypertensive rats (SHR). The filtration method for the determination of erythrocyte deformability and the fluorescent probe DAF-2 DA for NO production were applied. Deformability and NO production by erythrocytes increased at a younger age, while a decrease in both parameters was observed at an older age. Strain-related differences in deformability were observed at 7 and 52 weeks of age. SHR-7 had reduced deformability and SHR-52 had increased deformability compared with age-matched WKY. Changes in NO production under hypertensive conditions are an unlikely primary factor affecting erythrocyte deformability, whereas age-related changes in deformability are at least partially associated with changes in NO production. However, an interpretation of data obtained in erythrocyte parameters observed in SHRs of human hypertension requires precaution. Full article

(This article belongs to the Special Issue Physiological and Structural Changes in Erythrocytes in Hypertensive Patients)

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16 pages, 3511 KiB

Open AccessArticle

Modulation of Antioxidant Compounds in Fruits of Citrus reticulata Blanco Using Postharvest LED Irradiation

by Giulia Costanzo, Ermenegilda Vitale, Maria Rosaria Iesce, Michele Spinelli, Carolina Fontanarosa, Roberta Paradiso, Angela Amoresano and Carmen Arena

Biology 2023, 12(7), 1029; https://doi.org/10.3390/biology12071029 - 21 Jul 2023

Cited by 3 | Viewed by 1948

Abstract

Phlegrean mandarin fruits are already known for health-promoting properties due to the high concentration of phytochemicals in peel, pulp, and seed. Biotic and abiotic factors, including light, may modulate their biosynthesis, metabolism, and accumulation. In this context, light-emitting diodes (LED) have recently been [...] Read more.

Phlegrean mandarin fruits are already known for health-promoting properties due to the high concentration of phytochemicals in peel, pulp, and seed. Biotic and abiotic factors, including light, may modulate their biosynthesis, metabolism, and accumulation. In this context, light-emitting diodes (LED) have recently been applied to control nutritional traits, ripening process, senescence, fruit shelf-life, and pathogenic microbial spoilage of fruits. This study investigated the effect of the seven-day exposure of Phlegrean mandarin fruits to two LED regimes, white (W) and red–blue (RB), to test the possibility that the storage under specific light wavelengths may be used as green preservation technology that enhances fruit phytochemical properties. To pursue this aim, the antioxidant activity and polyphenolic profile of the pulp and peel of mandarins under W and RB light regimes were evaluated and compared with Control fruits not exposed to LED treatment. Our results indicated that storage under W and RB treatments modulates the antioxidant content in pulp and peel differently. Compared to W, the RB regime increases the ascorbic acid, flavonoid, anthocyanin, and carotenoid concentrations, while the polyphenol profile analysis reveals that the number of important phytochemicals, i.e., quercetin rutinoside, chlorogenic acid, sinensetin, and rutin, are higher under W. The overall data demonstrated that postharvest LED irradiation is a valid tool for modifying fruit phytochemical properties, which also boosts specific bioactive compounds. Full article

(This article belongs to the Special Issue Physiological, Biochemical, and Molecular Response in Plants under Light-Emitting Diode (LED) Treatment)

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25 pages, 2672 KiB

Open AccessReview

Angiogenesis and Lymphangiogenesis in Medulloblastoma Development

by Manon Penco-Campillo, Gilles Pages and Sonia Martial

Biology 2023, 12(7), 1028; https://doi.org/10.3390/biology12071028 - 21 Jul 2023

Cited by 3 | Viewed by 1832

Abstract

Medulloblastoma (MB) is the most prevalent brain tumor in children. Although the current cure rate stands at approximately 70%, the existing treatments that involve a combination of radio- and chemotherapy are highly detrimental to the patients’ quality of life. These aggressive therapies often [...] Read more.

Medulloblastoma (MB) is the most prevalent brain tumor in children. Although the current cure rate stands at approximately 70%, the existing treatments that involve a combination of radio- and chemotherapy are highly detrimental to the patients’ quality of life. These aggressive therapies often result in a significant reduction in the overall well-being of the patients. Moreover, the most aggressive forms of MB frequently relapse, leading to a fatal outcome in a majority of cases. However, MB is highly vascularized, and both angiogenesis and lymphangiogenesis are believed to play crucial roles in tumor development and spread. In this context, our objective is to provide a comprehensive overview of the current research progress in elucidating the functions of these two pathways. Full article

(This article belongs to the Special Issue Cellular and Molecular Mechanisms of Medulloblastoma and Its Therapeutic Targets)

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20 pages, 4089 KiB

Open AccessReview

An Introduction to Diopatra, the Amazing Ecosystem Engineering Polychaete

by Andrés Arias, Sarah A. Woodin and Hannelore Paxton

Biology 2023, 12(7), 1027; https://doi.org/10.3390/biology12071027 - 21 Jul 2023

Cited by 1 | Viewed by 2242 | Correction

Abstract

The annelid genus Diopatra occurs in all major oceans but is best represented in the shallow depths of warmer waters, where it lives in elaborately decorated tubes. This paper provides an introduction to the animals, discussing their history and diversity. We describe and [...] Read more.

The annelid genus Diopatra occurs in all major oceans but is best represented in the shallow depths of warmer waters, where it lives in elaborately decorated tubes. This paper provides an introduction to the animals, discussing their history and diversity. We describe and illustrate its morphology and geographic distribution. While they were thought to be predominantly gonochoristic, recent reproductive studies show that several species are protandric simultaneous hermaphrodites. Development is by broadcast spawning with a brief pelagic stage or direct development in the parental tube or egg mass attached to it. Diopatra is a key ecosystem engineer, altering water flow and deposition and increasing the availability of refugia. We also discuss its harvesting as fishing bait, its role as an alien or introduced species, its capacity to regenerate, its therapeutic potential, and its applications as a bioindicator species for climate change, geographic distribution changes, and dispersal. Full article

(This article belongs to the Special Issue Diopatra: The Amazing Ecosystem Engineering Polychaetous Annelid)

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23 pages, 847 KiB

Open AccessReview

Modeling Dynamics of the Cardiovascular System Using Fluid-Structure Interaction Methods

by Faiz Syed, Sahar Khan and Milan Toma

Biology 2023, 12(7), 1026; https://doi.org/10.3390/biology12071026 - 21 Jul 2023

Cited by 7 | Viewed by 14923

Abstract

Using fluid-structure interaction algorithms to simulate the human circulatory system is an innovative approach that can provide valuable insights into cardiovascular dynamics. Fluid-structure interaction algorithms enable us to couple simulations of blood flow and mechanical responses of the blood vessels while taking into [...] Read more.

Using fluid-structure interaction algorithms to simulate the human circulatory system is an innovative approach that can provide valuable insights into cardiovascular dynamics. Fluid-structure interaction algorithms enable us to couple simulations of blood flow and mechanical responses of the blood vessels while taking into account interactions between fluid dynamics and structural behaviors of vessel walls, heart walls, or valves. In the context of the human circulatory system, these algorithms offer a more comprehensive representation by considering the complex interplay between blood flow and the elasticity of blood vessels. Algorithms that simulate fluid flow dynamics and the resulting forces exerted on vessel walls can capture phenomena such as wall deformation, arterial compliance, and the propagation of pressure waves throughout the cardiovascular system. These models enhance the understanding of vasculature properties in human anatomy. The utilization of fluid-structure interaction methods in combination with medical imaging can generate patient-specific models for individual patients to facilitate the process of devising treatment plans. This review evaluates current applications and implications of fluid-structure interaction algorithms with respect to the vasculature, while considering their potential role as a guidance tool for intervention procedures. Full article

(This article belongs to the Special Issue Computational Methods in Biology Research)

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25 pages, 6374 KiB

Open AccessArticle

An Eco-Friendly Approach Utilizing Green Synthesized Titanium Dioxide Nanoparticles for Leather Conservation against a Fungal Strain, Penicillium expansum AL1, Involved in the Biodeterioration of a Historical Manuscript

by Amr Fouda, Mahmoud Abdel-Nasser, Ahmed M. Eid, Saad El-Din Hassan, Aya Abdel-Nasser, Nada K. Alharbi, Ahlam H. AlRokban and Gomaa Abdel-Maksoud

Biology 2023, 12(7), 1025; https://doi.org/10.3390/biology12071025 - 20 Jul 2023

Cited by 12 | Viewed by 2032

Abstract

The main hypothesis of the present research is investigating the efficacy of titanium oxide nanoparticles (TiO₂-NPs) to prevent the growth of fungal strains when applied on leather under an experimental study. Therefore, fifteen fungal strains were isolated from a deteriorated historical [...] Read more.

The main hypothesis of the present research is investigating the efficacy of titanium oxide nanoparticles (TiO₂-NPs) to prevent the growth of fungal strains when applied on leather under an experimental study. Therefore, fifteen fungal strains were isolated from a deteriorated historical manuscript (papers and leathers) and identified by traditional methods and ITS sequence analysis, including Aspergillus chevalieri (one isolate), A. nidulans (two strains), A. flavus (four strains), A. cristatus (one strain), A. niger (one strain), Paecilomyces fulvus (two strains), Penicillium expansum (two strains), and P. citrinum (two strains). The enzymes cellulase, amylase, pectinase, and gelatinase, which play a crucial role in biodegradation, were highly active in these fungal strains. TiO₂-NPs were formed using the cell-free filtrate of the probiotic bacterial strain, Lactobacillus plantarum, and characterized. Data showed that the TiO₂-NPs were successfully formed with a spherical shape and anatase phase with sizes of 2–8 nm. Moreover, the EDX analysis revealed that the Ti and O ions occupied the main component with weight percentages of 41.66 and 31.76%, respectively. The in vitro cytotoxicity of TiO₂-NPs toward two normal cell lines, WI38 and HFB4, showed a low toxicity effect against normal cells (IC₅₀ = 114.1 ± 8.1µg mL⁻¹ for Wi38, and 237.5 ± 3.5µg mL⁻¹ for HFB4). Therefore, concentrations of 100 μg mL⁻¹ were used to load on prepared leather samples before inoculation with fungal strain P. expansum AL1. The experimental study revealed that the loaded TiO₂-NPs have the efficacy to inhibit fungal growth with percentages of 73.2 ± 2.5%, 84.2 ± 1.8%, and 88.8 ± 0.6% after 7, 14, and 21 days, respectively. Also, the analyses including SEM, FTIR-ART, color change, and mechanical properties for leather inoculated with fungal strain AL1 in the absence of NPs showed high damage aspects compared to those inoculated with fungal strains in the presence of TiO₂-NPs. Full article

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16 pages, 11010 KiB

Open AccessArticle

The Mechanism by Which Umbrella-Shaped Ratchet Trichomes on the Elaeagnus angustifolia Leaf Surface Collect Water and Reflect Light

by Zhanlin Bei, Xin Zhang and Xingjun Tian

Biology 2023, 12(7), 1024; https://doi.org/10.3390/biology12071024 - 20 Jul 2023

Cited by 4 | Viewed by 2136

Abstract

Leaves are essential for plants, enabling photosynthesis and transpiration. In arid regions, water availability limits plant growth. Some plants, like Elaeagnus angustifolia, a sandy sub-tree species widely distributed in arid and semi-arid regions, have unique leaf structures to reduce water loss and [...] Read more.

Leaves are essential for plants, enabling photosynthesis and transpiration. In arid regions, water availability limits plant growth. Some plants, like Elaeagnus angustifolia, a sandy sub-tree species widely distributed in arid and semi-arid regions, have unique leaf structures to reduce water loss and solar radiation. Here, we describe the leaves of Elaeagnus angustifolia L., with special functioning trichomes. Through leaf submicroscopic structure observation, in situ water collection experiments, photosynthesis measurements, and reflection spectrum analysis, we investigated E. angustifolia leaves, focusing on their functioning trichomes. These trichomes capture water vapor, reflect UV and NIR light, and possess a 3D interface structure composed of 1D and 2D structures. The 1D conical structure captures water droplets, which are then gathered by the radial conical structure and guided towards the stomata through wedge-shaped grooves on the 2D umbrella structure. The trichomes also reflect sunlight, with micropapillae reflecting UV light and the umbrella structure reflecting NIR light. These mechanisms reduce leaf temperature, respiration, and water transpiration, protecting against solar radiation damage. This study provides insights into water collection and light-reflection mechanisms, revealing adaptive strategies of plants with large leaves in arid regions. Full article

(This article belongs to the Special Issue Editorial Board Members' Collection Series: “Biodiversity and Ecosystem Function under Global Change”)

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16 pages, 5375 KiB

Open AccessArticle

Study of Archaeal Diversity in the Arctic Meltwater Lake Region

by Yiling Qin, Nengfei Wang, Li Zheng, Qinxin Li, Long Wang, Xiaoyu Xu and Xiaofei Yin

Biology 2023, 12(7), 1023; https://doi.org/10.3390/biology12071023 - 20 Jul 2023

Viewed by 1408

Abstract

Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two [...] Read more.

Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by Nitrososphaeraceae_unclassified and Candidatus_Nitrocosmicus, while the subtidal zone was dominated by Methanoregula. The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO₂⁻-N), and nitrate nitrogen (NO₃⁻-N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH₄⁺-N, SiO₃²⁻-Si, MC, NO₃⁻-N, and NO₂⁻-N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, Woesearchaeales was found to be the hub archaea genus at every site. Full article

(This article belongs to the Special Issue Microbial Diversity and Environmental Adaptability of Microorganisms in Extreme Environments)

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11 pages, 1729 KiB

Open AccessArticle

The Spatial Precision of Contextual Feedback Signals in Human V1

by Lucy S. Petro, Fraser W. Smith, Clement Abbatecola and Lars Muckli

Biology 2023, 12(7), 1022; https://doi.org/10.3390/biology12071022 - 20 Jul 2023

Cited by 2 | Viewed by 1629

Abstract

Neurons in the primary visual cortex (V1) receive sensory inputs that describe small, local regions of the visual scene and cortical feedback inputs from higher visual areas processing the global scene context. Investigating the spatial precision of this visual contextual modulation will contribute [...] Read more.

Neurons in the primary visual cortex (V1) receive sensory inputs that describe small, local regions of the visual scene and cortical feedback inputs from higher visual areas processing the global scene context. Investigating the spatial precision of this visual contextual modulation will contribute to our understanding of the functional role of cortical feedback inputs in perceptual computations. We used human functional magnetic resonance imaging (fMRI) to test the spatial precision of contextual feedback inputs to V1 during natural scene processing. We measured brain activity patterns in the stimulated regions of V1 and in regions that we blocked from direct feedforward input, receiving information only from non-feedforward (i.e., feedback and lateral) inputs. We measured the spatial precision of contextual feedback signals by generalising brain activity patterns across parametrically spatially displaced versions of identical images using an MVPA cross-classification approach. We found that fMRI activity patterns in cortical feedback signals predicted our scene-specific features in V1 with a precision of approximately 4 degrees. The stimulated regions of V1 carried more precise scene information than non-stimulated regions; however, these regions also contained information patterns that generalised up to 4 degrees. This result shows that contextual signals relating to the global scene are similarly fed back to V1 when feedforward inputs are either present or absent. Our results are in line with contextual feedback signals from extrastriate areas to V1, describing global scene information and contributing to perceptual computations such as the hierarchical representation of feature boundaries within natural scenes. Full article

(This article belongs to the Section Neuroscience)

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14 pages, 1103 KiB

Open AccessArticle

Biological Fitness Cost, Demographic Growth Characteristics, and Resistance Mechanism in Alpha-Cypermethrin-Resistant Musca domestica (Diptera: Muscidae)

by Abdulwahab M. Hafez and Naeem Abbas

Biology 2023, 12(7), 1021; https://doi.org/10.3390/biology12071021 - 19 Jul 2023

Cited by 4 | Viewed by 1710

Abstract

Musca domestica L., a pest of animals and humans, has developed resistance to alpha-cypermethrin, a pyrethroid insecticide commonly used to control medically important pests in many countries, including Saudi Arabia. We investigated the mechanism underlying the development of alpha-cypermethrin resistance and life history [...] Read more.

Musca domestica L., a pest of animals and humans, has developed resistance to alpha-cypermethrin, a pyrethroid insecticide commonly used to control medically important pests in many countries, including Saudi Arabia. We investigated the mechanism underlying the development of alpha-cypermethrin resistance and life history characteristics of alpha-cypermethrin–susceptible (Alpha-SS) and alpha-cypermethrin-resistant (Alpha-RS) M. domestica using the age-stage, two-sex life table theory, which is crucial for developing a future rational management strategy and minimizing the negative effects of alpha-cypermethrin on the environment. Our results showed that Alpha-RS M. domestica had a 405.93-fold increase in resistance to alpha-cypermethrin relative to Alpha-SS M. domestica. This increase in the resistance toward insecticide was attributed to metabolic enzymes, such as glutathione S-transferases, specific esterases, and cytochrome P450 monooxygenases. Furthermore, Alpha-RS M. domestica exhibited lower relative fitness (0.50), longevity, survival rate, life expectancy, reproductive values, intrinsic rate of increase, net reproductive rate, fecundity, maternity, and finite rate of increase, along with shorter larval, female preadult, and adult durations than Alpha-SS M. domestica, indicating fitness costs associated with most parameters. However, no significant differences were found between the strains in the following parameters: egg, pupa, and male preadult durations; adult preoviposition, total preoviposition, and oviposition periods; female ratio; and total generation time. Additionally, Alpha-RS M. domestica had a markedly lower intrinsic rate of increase, net reproductive rate, and finite rate of increase than Alpha-SS M. domestica. The results of this study suggest that alpha-cypermethrin resistance may lead to dominant fitness costs in M. domestica. Overall, these findings will aid in the development of rational control strategies for M. domestica as well as help to reduce pesticide pollution. Full article

(This article belongs to the Special Issue Evolution of Insecticide Resistance Mechanisms in Insect Pests)

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14 pages, 10082 KiB

Open AccessArticle

TAFPred: Torsion Angle Fluctuations Prediction from Protein Sequences

by Md Wasi Ul Kabir, Duaa Mohammad Alawad, Avdesh Mishra and Md Tamjidul Hoque

Biology 2023, 12(7), 1020; https://doi.org/10.3390/biology12071020 - 19 Jul 2023

Cited by 1 | Viewed by 2108

Abstract

Protein molecules show varying degrees of flexibility throughout their three-dimensional structures. The flexibility is determined by the fluctuations in torsion angles, specifically phi (φ) and psi (ψ), which define the protein backbone. These angle fluctuations are derived from variations in backbone torsion angles [...] Read more.

Protein molecules show varying degrees of flexibility throughout their three-dimensional structures. The flexibility is determined by the fluctuations in torsion angles, specifically phi (φ) and psi (ψ), which define the protein backbone. These angle fluctuations are derived from variations in backbone torsion angles observed in different models. By analyzing the fluctuations in Cartesian coordinate space, we can understand the structural flexibility of proteins. Predicting torsion angle fluctuations is valuable for determining protein function and structure when these angles act as constraints. In this study, a machine learning method called TAFPred is developed to predict torsion angle fluctuations using protein sequences directly. The method incorporates various features, such as disorder probability, position-specific scoring matrix profiles, secondary structure probabilities, and more. TAFPred, employing an optimized Light Gradient Boosting Machine Regressor (LightGBM), achieved high accuracy with correlation coefficients of 0.746 and 0.737 and mean absolute errors of 0.114 and 0.123 for the φ and ψ angles, respectively. Compared to the state-of-the-art method, TAFPred demonstrated significant improvements of 10.08% in MAE and 24.83% in PCC for the phi angle and 9.93% in MAE, and 22.37% in PCC for the psi angle. Full article

(This article belongs to the Topic Advances in Bioinformatics and Computational Biology of Human Disease)

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19 pages, 2216 KiB

Open AccessReview

Peripheral Mitochondrial Dysfunction: A Potential Contributor to the Development of Metabolic Disorders and Alzheimer’s Disease

by Most Arifa Sultana, Raksa Andalib Hia, Oluwatosin Akinsiku and Vijay Hegde

Biology 2023, 12(7), 1019; https://doi.org/10.3390/biology12071019 - 19 Jul 2023

Cited by 10 | Viewed by 3204

Abstract

Alzheimer’s disease (AD) is a progressive neurodegenerative disease characterized by loss of function and eventual death of neurons in the brain. Multiple studies have highlighted the involvement of mitochondria in the initiation and advancement of neurodegenerative diseases. Mitochondria are essential for ATP generation, [...] Read more.

Alzheimer’s disease (AD) is a progressive neurodegenerative disease characterized by loss of function and eventual death of neurons in the brain. Multiple studies have highlighted the involvement of mitochondria in the initiation and advancement of neurodegenerative diseases. Mitochondria are essential for ATP generation, bioenergetics processes, the regulation of calcium homeostasis and free radical scavenging. Disrupting any of these processes has been acknowledged as a major contributor to the pathogenesis of common neurodegenerative diseases, especially AD. Several longitudinal studies have demonstrated type 2 diabetes (T2D) as a risk factor for the origin of dementia leading towards AD. Even though emerging research indicates that anti-diabetic intervention is a promising option for AD prevention and therapy, results from clinical trials with anti-diabetic agents have not been effective in AD. Interestingly, defective mitochondrial function has also been reported to contribute towards the onset of metabolic disorders including obesity and T2D. The most prevalent consequences of mitochondrial dysfunction include the generation of inflammatory molecules and reactive oxygen species (ROS), which promote the onset and development of metabolic impairment and neurodegenerative diseases. Current evidence indicates an association of impaired peripheral mitochondrial function with primary AD pathology; however, the mechanisms are still unknown. Therefore, in this review, we discuss if mitochondrial dysfunction-mediated metabolic disorders have a potential connection with AD development, then would addressing peripheral mitochondrial dysfunction have better therapeutic outcomes in preventing metabolic disorder-associated AD pathologies. Full article

(This article belongs to the Section Neuroscience)

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10 pages, 2719 KiB

Open AccessTechnical Note

Assessment of Anatomical Uniqueness of Maxillary Sinuses through 3D–3D Superimposition: An Additional Help to Personal Identification

by Andrea Palamenghi, Annalisa Cappella, Michaela Cellina, Danilo De Angelis, Chiarella Sforza, Cristina Cattaneo and Daniele Gibelli

Biology 2023, 12(7), 1018; https://doi.org/10.3390/biology12071018 - 18 Jul 2023

Cited by 3 | Viewed by 1566

Abstract

Paranasal sinuses represent one of the most individualizing structures of the human body and some of them have been already analyzed for possible applications to personal identification, such as the frontal and sphenoid sinuses. This study explores the application of 3D–3D superimposition to [...] Read more.

Paranasal sinuses represent one of the most individualizing structures of the human body and some of them have been already analyzed for possible applications to personal identification, such as the frontal and sphenoid sinuses. This study explores the application of 3D–3D superimposition to maxillary sinuses in personal identification. One hundred head CT-scans of adult subjects (equally divided among males and females) were extracted from a hospital database. Maxillary sinuses were segmented twice from each subject through ITK-SNAP software and the correspondent 3D models were automatically superimposed to obtain 100 matches (when they belonged to the same person) and 100 mismatches (when they were extracted from different individuals), both from the right and left side. Average RMS (root mean square) point-to-point distance was then calculated for all the superimpositions; differences according to sex, side, and group (matches and mismatches) were assessed through three-way ANOVA test (p < 0.017). On average, RMS values were lower in matches (0.26 ± 0.19 mm in males, 0.24 ± 0.18 mm in females) than in mismatches (2.44 ± 0.87 mm in males, 2.20 ± 0.73 mm in females) with a significant difference (p < 0.001). No significant differences were found according to sex or side (p > 0.017). The study verified the potential of maxillary sinuses as reliable anatomical structures for personal identification in the forensic context. Full article

(This article belongs to the Special Issue Forensic Identification in a Multidisciplinary Perspective: Focusing on Big Challenges)

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17 pages, 3499 KiB

Open AccessArticle

Study on the Tea Pest Classification Model Using a Convolutional and Embedded Iterative Region of Interest Encoding Transformer

by Baishao Zhan, Ming Li, Wei Luo, Peng Li, Xiaoli Li and Hailiang Zhang

Biology 2023, 12(7), 1017; https://doi.org/10.3390/biology12071017 - 17 Jul 2023

Cited by 5 | Viewed by 1563

Abstract

Tea diseases are one of the main causes of tea yield reduction, and the use of computer vision for classification and diagnosis is an effective means of tea disease management. However, the random location of lesions, high symptom similarity, and complex background make [...] Read more.

Tea diseases are one of the main causes of tea yield reduction, and the use of computer vision for classification and diagnosis is an effective means of tea disease management. However, the random location of lesions, high symptom similarity, and complex background make the recognition and classification of tea images difficult. Therefore, this paper proposes a tea disease IterationVIT diagnosis model that integrates a convolution and iterative transformer. The convolution consists of a superimposed bottleneck layer for extracting the local features of tea leaves. The iterative algorithm incorporates the attention mechanism and bilinear interpolation operation to obtain disease location information by continuously updating the region of interest in location information. The transformer module uses a multi-head attention mechanism for global feature extraction. A total of 3544 images of red leaf spot, algal leaf spot, bird’s eye disease, gray wilt, white spot, anthracnose, brown wilt, and healthy tea leaves collected under natural light were used as samples and input into the IterationVIT model for training. The results show that when the patch size is 16, the model performed better with an IterationVIT classification accuracy of 98% and F1 measure of 96.5%, which is superior to mainstream methods such as VIT, Efficient, Shuffle, Mobile, Vgg, etc. In order to verify the robustness of the model, the original images of the test set were blurred, noise- was added and highlighted, and then the images were input into the IterationVIT model. The classification accuracy still reached over 80%. When 60% of the training set was randomly selected, the classification accuracy of the IterationVIT model test set was 8% higher than that of mainstream models, with the ability to analyze fewer samples. Model generalizability was performed using three sets of plant leaf public datasets, and the experimental results were all able to achieve comparable levels of generalizability to the data in this paper. Finally, this paper visualized and interpreted the model using the CAM method to obtain the pixel-level thermal map of tea diseases, and the results show that the established IterationVIT model can accurately capture the location of diseases, which further verifies the effectiveness of the model. Full article

(This article belongs to the Section Plant Science)

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20 pages, 4246 KiB

Open AccessArticle

How the Oviduct Lipidomic Profile Changes over Time after the Start of an Obesogenic Diet in an Outbred Mouse Model

by Kerlijne Moorkens, Jo L. M. R. Leroy, Jusal Quanico, Geert Baggerman and Waleed F. A. Marei

Biology 2023, 12(7), 1016; https://doi.org/10.3390/biology12071016 - 17 Jul 2023

Viewed by 1592

Abstract

We investigated whether a high-fat/high-sugar (HF/HS) diet alters the lipidomic profile of the oviductal epithelium (OE) and studied the patterns of these changes over time. Female outbred Swiss mice were fed either a control (10% fat) or HF/HS (60% fat, 20% fructose) diet. [...] Read more.

We investigated whether a high-fat/high-sugar (HF/HS) diet alters the lipidomic profile of the oviductal epithelium (OE) and studied the patterns of these changes over time. Female outbred Swiss mice were fed either a control (10% fat) or HF/HS (60% fat, 20% fructose) diet. Mice (n = 3 per treatment per time point) were sacrificed and oviducts were collected at 3 days and 1, 4, 8, 12 and 16 weeks on the diet. Lipids in the OE were imaged using matrix-assisted laser desorption ionisation mass spectrometry imaging. Discriminative m/z values and differentially regulated lipids were determined in the HF/HS versus control OEs at each time point. Feeding the obesogenic diet resulted in acute changes in the lipid profile in the OE already after 3 days, and thus even before the development of an obese phenotype. The changes in the lipid profile of the OE progressively increased and became more persistent after long-term HF/HS diet feeding. Functional annotation revealed a differential abundance of phospholipids, sphingomyelins and lysophospholipids in particular. These alterations appear to be not only caused by the direct accumulation of the excess circulating dietary fat but also a reduction in the de novo synthesis of several lipid classes, due to oxidative stress and endoplasmic reticulum dysfunction. The described diet-induced lipidomic changes suggest alterations in the OE functions and the oviductal microenvironment which may impact crucial reproductive events that take place in the oviduct, such as fertilization and early embryo development. Full article

(This article belongs to the Section Developmental and Reproductive Biology)

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22 pages, 5929 KiB

Open AccessArticle

Shifts in the Distribution Range and Niche Dynamics of the Globally Threatened Western Tragopan (Tragopan melanocephalus) Due to Climate Change and Human Population Pressure

by Muhammad Azhar Jameel, Muhammad Sajid Nadeem, Shiekh Marifatul Haq, Iqra Mubeen, Arifa Shabbir, Shahzad Aslam, Riyaz Ahmad, Abdel-Rhman Z. Gaafar, Bander M. A. Al-Munqedhi and Rainer W. Bussmann

Biology 2023, 12(7), 1015; https://doi.org/10.3390/biology12071015 - 17 Jul 2023

Cited by 2 | Viewed by 14625

Abstract

The impact of a changing climate, particularly global warming, often harms the distribution of pheasants, particularly those with limited endemic ranges. To effectively create plans of action aimed at conserving species facing threats such as the Western Tragopan, (Tragopan melanocephalus; Gray, 1829; [...] Read more.

The impact of a changing climate, particularly global warming, often harms the distribution of pheasants, particularly those with limited endemic ranges. To effectively create plans of action aimed at conserving species facing threats such as the Western Tragopan, (Tragopan melanocephalus; Gray, 1829; Galliformes, found in the western Himalayas), it is crucial to understand how future distributions may be affected by anticipated climate change. This study utilized MaxEnt modeling to assess how suitable the habitat of the targeted species is likely to be under different climate scenarios. While similar studies have been conducted regionally, there has been no research on this particular endemic animal species found in the western Himalayas throughout the entire distribution range. The study utilized a total of 200 occurrence points; 19 bioclimatic, four anthropogenic, three topographic, and a vegetation variable were also used. To determine the most fitting model, species distribution modeling (SDM) was employed, and the MaxEnt calibration and optimization techniques were utilized. Data for projected climate scenarios of the 2050s and 2070s were obtained from SSPs 245 and SSPs 585. Among all the variables analyzed; aspect, precipitation of coldest quarter, mean diurnal range, enhanced vegetation index, precipitation of driest month, temperature seasonality, annual precipitation, human footprint, precipitation of driest quarter, and temperature annual range were recognized as the most influential drivers, in that order. The predicted scenarios had high accuracy values (AUC-ROC > 0.9). Based on the feedback provided by the inhabitants, it was observed that the livability of the selected species could potentially rise (between 3.7 to 13%) in all projected scenarios of climate change, because this species is relocating towards the northern regions of the elevation gradient, which is farther from the residential areas, and their habitats are shrinking. The suitable habitats of the Tragopan melanocephalus in the Himalayan region will move significantly by 725 m upwards, because of predicted climate change. However, the fact that the species is considered extinct in most areas and only found in small patches suggests that further research is required to avert a further population decline and delineate the reasons leading to the regional extinction of the species. The results of this study can serve as a foundation for devising conservation strategies for Tragopan melanocephalus under the changing climate and provide a framework for subsequent surveillance efforts aimed at protecting the species. Full article

(This article belongs to the Special Issue Conservation and Evolution of Wildlife in the Context of Climate Change and Human Population Growth)

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20 pages, 2686 KiB

Open AccessArticle

Symbiont Identity Impacts the Microbiome and Volatilome of a Model Cnidarian-Dinoflagellate Symbiosis

by Maggie Wuerz, Caitlin A. Lawson, Clinton A. Oakley, Malcolm Possell, Shaun P. Wilkinson, Arthur R. Grossman, Virginia M. Weis, David J. Suggett and Simon K. Davy

Biology 2023, 12(7), 1014; https://doi.org/10.3390/biology12071014 - 17 Jul 2023

Cited by 4 | Viewed by 2223

Abstract

The symbiosis between cnidarians and dinoflagellates underpins the success of reef-building corals in otherwise nutrient-poor habitats. Alterations to symbiotic state can perturb metabolic homeostasis and thus alter the release of biogenic volatile organic compounds (BVOCs). While BVOCs can play important roles in metabolic [...] Read more.

The symbiosis between cnidarians and dinoflagellates underpins the success of reef-building corals in otherwise nutrient-poor habitats. Alterations to symbiotic state can perturb metabolic homeostasis and thus alter the release of biogenic volatile organic compounds (BVOCs). While BVOCs can play important roles in metabolic regulation and signalling, how the symbiotic state affects BVOC output remains unexplored. We therefore characterised the suite of BVOCs that comprise the volatilome of the sea anemone Exaiptasia diaphana (‘Aiptasia’) when aposymbiotic and in symbiosis with either its native dinoflagellate symbiont Breviolum minutum or the non-native symbiont Durusdinium trenchii. In parallel, the bacterial community structure in these different symbiotic states was fully characterised to resolve the holobiont microbiome. Based on rRNA analyses, 147 unique amplicon sequence variants (ASVs) were observed across symbiotic states. Furthermore, the microbiomes were distinct across the different symbiotic states: bacteria in the family Vibrionaceae were the most abundant in aposymbiotic anemones; those in the family Crocinitomicaceae were the most abundant in anemones symbiotic with D. trenchii; and anemones symbiotic with B. minutum had the highest proportion of low-abundance ASVs. Across these different holobionts, 142 BVOCs were detected and classified into 17 groups based on their chemical structure, with BVOCs containing multiple functional groups being the most abundant. Isoprene was detected in higher abundance when anemones hosted their native symbiont, and dimethyl sulphide was detected in higher abundance in the volatilome of both Aiptasia-Symbiodiniaceae combinations relative to aposymbiotic anemones. The volatilomes of aposymbiotic anemones and anemones symbiotic with B. minutum were distinct, while the volatilome of anemones symbiotic with D. trenchii overlapped both of the others. Collectively, our results are consistent with previous reports that D. trenchii produces a metabolically sub-optimal symbiosis with Aiptasia, and add to our understanding of how symbiotic cnidarians, including corals, may respond to climate change should they acquire novel dinoflagellate partners. Full article

(This article belongs to the Section Marine Biology)

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14 pages, 1128 KiB

Open AccessReview

PACAP and VIP Neuropeptides’ and Receptors’ Effects on Appetite, Satiety and Metabolism

by John P. Vu, Leon Luong, Daniel Sanford, Suwan Oh, Alma Kuc, Rita Pisegna, Michael Lewis, Joseph R. Pisegna and Patrizia M. Germano

Biology 2023, 12(7), 1013; https://doi.org/10.3390/biology12071013 - 17 Jul 2023

Cited by 5 | Viewed by 2756

Abstract

The overwhelming increase in the prevalence of obesity and related disorders in recent years is one of the greatest threats to the global healthcare system since it generates immense healthcare costs. As the prevalence of obesity approaches epidemic proportions, the importance of elucidating [...] Read more.

The overwhelming increase in the prevalence of obesity and related disorders in recent years is one of the greatest threats to the global healthcare system since it generates immense healthcare costs. As the prevalence of obesity approaches epidemic proportions, the importance of elucidating the mechanisms regulating appetite, satiety, body metabolism, energy balance and adiposity has garnered significant attention. Currently, gastrointestinal (GI) bariatric surgery remains the only approach capable of achieving successful weight loss. Appetite, satiety, feeding behavior, energy intake and expenditure are regulated by central and peripheral neurohormonal mechanisms that have not been fully elucidated yet. Pituitary Adenylate Cyclase-Activating Polypeptide (PACAP) and Vasoactive Intestinal Polypeptide (VIP) are members of a family of regulatory peptides that are widely distributed in parallel with their specific receptors, VPAC1R, VPAC2R and PAC1R, in the central nervous system (CNS) and in the periphery, such as in the gastrointestinal tract and its associated organs and immune cells. PACAP and VIP have been reported to play an important role in the regulation of body phenotype, metabolism and homeostatic functions. The purpose of this review is to present recent data on the effects of PACAP, VIP, VPAC1R, VPAC2R and PAC1R on the modulation of appetite, satiety, metabolism, calorie intake and fat accumulation, to evaluate their potential use as therapeutic targets for the treatment of obesity and metabolic syndrome. Full article

(This article belongs to the Section Physiology)

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