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Biomolecules, Volume 9, Issue 7

2019 July - 44 articles

Cover Story: The rod and the hook are structural components of the bacterial flagellum, a filamentous organelle for motility. The distal rod and the hook are similar helical assemblies of homologous proteins, FlgG and FlgE, respectively, but they show distinct mechanical characteristics. The rod is a rigid drive shaft whereas the hook is a universal joint with high bending flexibility. Our new rod model reveals that an extending segment, L-stretch, mediates extensive interactions with neighboring subunits (the left panel). In contrast, L-stretch of the hook is short and mediates fewer interactions (the right panel). These structures suggest that the L-stretch plays a key role in achieving the distinct mechanical properties of the rod and the hook. View this paper.
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Articles (44)

  • Review
  • Open Access
36 Citations
7,654 Views
17 Pages

The survival of the human malaria parasite Plasmodium falciparum under the physiologically distinct environments associated with their development in the cold-blooded invertebrate mosquito vectors and the warm-blooded vertebrate human host requires a...

  • Article
  • Open Access
63 Citations
5,144 Views
17 Pages

A Simple and Efficient Molecularly Imprinted Electrochemical Sensor for the Selective Determination of Tryptophan

  • Yaling Tian,
  • Peihong Deng,
  • Yiyong Wu,
  • Ziyu Ding,
  • Guangli Li,
  • Jun Liu and
  • Quanguo He

In this paper, a tryptophan (Trp) molecularly imprinted chitosan film was prepared on the surface of an acetylene black paste electrode using chitosan as the functional polymer, Trp as the template molecule and sulfuric acid as the crosslinking agent...

  • Article
  • Open Access
30 Citations
7,341 Views
16 Pages

Antihypertensive Indigenous Lebanese Plants: Ethnopharmacology and a Clinical Trial

  • Ali A. Samaha,
  • Mirna Fawaz,
  • Ali Salami,
  • Safaa Baydoun and
  • Ali H. Eid

Hypertension is highly prevalent among the Lebanese adult population and is indeed the major cause of mortality in Lebanon. Traditional use of antihypertensive medicinal plants has long been practiced. The aim of this study is to document this tradit...

  • Article
  • Open Access
62 Citations
7,111 Views
19 Pages

Ca2+ serves as a ubiquitous second messenger regulating several aspects of plant growth and development. A group of unique calcium sensor proteins, calcineurin B-like (CBL), interact with CBL-interacting protein kinases (CIPKs) to decode the Ca2+ sig...

  • Article
  • Open Access
8 Citations
4,427 Views
9 Pages

Analysis of Polymorphism rs1333049 (Located at 9P21.3) in the White Population of Western Siberia and Associations with Clinical and Biochemical Markers

  • Elena Shakhtshneider,
  • Pavel Orlov,
  • Sergey Semaev,
  • Dinara Ivanoshchuk,
  • Sofia Malyutina,
  • Valery Gafarov,
  • Yuliya Ragino and
  • Mikhail Voevoda

The 9p21.3 chromosomal region is a marker of the risk of cardiovascular diseases. The aim of this study was to analyze single-nucleotide polymorphism rs1333049 (chr9:22125504) in the population of Western Siberia (Russia) and possible associations wi...

  • Article
  • Open Access
56 Citations
6,629 Views
13 Pages

Alginate Gel Reinforcement with Chitin Nanowhiskers Modulates Rheological Properties and Drug Release Profile

  • Valentina A. Petrova,
  • Vladimir Y. Elokhovskiy,
  • Sergei V. Raik,
  • Daria N. Poshina,
  • Dmitry P. Romanov and
  • Yury A. Skorik

Hydrogels are promising materials for various applications, including drug delivery, tissue engineering, and wastewater treatment. In this work, we designed an alginate (ALG) hydrogel containing partially deacetylated chitin nanowhiskers (CNW) as a f...

  • Article
  • Open Access
16 Citations
4,440 Views
10 Pages

Taraxacum officinale has been consumed as a folk remedy due to its diverse physiological activities. This study aimed to investigate the antioxidative potential of T. officinale water extract (TOWE) and ethanol extract (TOEE) against oxidative stress...

  • Review
  • Open Access
54 Citations
9,290 Views
19 Pages

DNA Methylation Status in Cancer Disease: Modulations by Plant-Derived Natural Compounds and Dietary Interventions

  • Karin Jasek,
  • Peter Kubatka,
  • Marek Samec,
  • Alena Liskova,
  • Karel Smejkal,
  • Desanka Vybohova,
  • Ondrej Bugos,
  • Kristina Biskupska-Bodova,
  • Tibor Bielik and
  • Dietrich Büsselberg
  • + 4 authors

The modulation of the activity of DNA methyltransferases (DNMTs) represents a crucial epigenetic mechanism affecting gene expressions or DNA repair mechanisms in the cells. Aberrant modifications in the function of DNMTs are a fundamental event and p...

  • Article
  • Open Access
15 Citations
5,847 Views
20 Pages

CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1

  • Ridvan Nepravishta,
  • Federica Ferrentino,
  • Walter Mandaliti,
  • Anna Mattioni,
  • Janine Weber,
  • Simona Polo,
  • Luisa Castagnoli,
  • Gianni Cesareni,
  • Maurizio Paci and
  • Elena Santonico

Ubiquitin binding domains (UBDs) are modular elements that bind non-covalently to ubiquitin and act as downstream effectors and amplifiers of the ubiquitination signal. With few exceptions, UBDs recognize the hydrophobic path centered on Ile44, inclu...

  • Review
  • Open Access
661 Citations
22,758 Views
36 Pages

Phytohormones Regulate Accumulation of Osmolytes Under Abiotic Stress

  • Anket Sharma,
  • Babar Shahzad,
  • Vinod Kumar,
  • Sukhmeen Kaur Kohli,
  • Gagan Preet Singh Sidhu,
  • Aditi Shreeya Bali,
  • Neha Handa,
  • Dhriti Kapoor,
  • Renu Bhardwaj and
  • Bingsong Zheng

Plants face a variety of abiotic stresses, which generate reactive oxygen species (ROS), and ultimately obstruct normal growth and development of plants. To prevent cellular damage caused by oxidative stress, plants accumulate certain compatible solu...

  • Review
  • Open Access
108 Citations
13,601 Views
23 Pages

Endothelial dysfunction is a key feature of cardiovascular disorders associated with obesity and diabetes. Several studies identified protein tyrosine phosphatase (PTP)-1B, a member of the PTP superfamily, as a major negative regulator for insulin re...

  • Article
  • Open Access
14 Citations
5,515 Views
16 Pages

Caveolin-1 Endows Order in Cholesterol-Rich Detergent Resistant Membranes

  • Carla Raggi,
  • Marco Diociaiuti,
  • Giulio Caracciolo,
  • Federica Fratini,
  • Luca Fantozzi,
  • Giovanni Piccaro,
  • Katia Fecchi,
  • Elisabetta Pizzi,
  • Giuseppe Marano and
  • Massimo Sargiacomo
  • + 3 authors

Cholesterol-enriched functional portions of plasma membranes, such as caveolae and rafts, were isolated from lungs of wild-type (WT) and caveolin-1 knockout (Cav-1 KO) mice within detergent resistant membranes (DRMs). To gain insight into their molec...

  • Review
  • Open Access
20 Citations
6,185 Views
14 Pages

Chronic liver diseases are a major global health burden, and cases of these conditions continue to rise in many countries. A diverse range of insults can lead to chronic liver disease, but they are all characterised by the infiltration and accumulati...

  • Article
  • Open Access
35 Citations
5,509 Views
15 Pages

A Hydroxypropyl Methylcellulose-Based Solid Dispersion of Curcumin with Enhanced Bioavailability and Its Hepatoprotective Activity

  • Myoung-Sook Shin,
  • Jun Sang Yu,
  • Jaemin Lee,
  • Young Seok Ji,
  • Hee Joung Joung,
  • Yu-Mee Han,
  • Hye Hyun Yoo and
  • Ki Sung Kang

Curcumin is a polyphenol compound derived from the rhizomes of Curcuma longa that exhibits antioxidant, anti-inflammatory, anticancer, and antimicrobial properties. However, its low solubility in aqueous solutions, low absorption following oral admin...

  • Article
  • Open Access
19 Citations
7,145 Views
35 Pages

Exploring the Molecular Mechanism of the Drug-Treated Breast Cancer Based on Gene Expression Microarray

  • Ali Mohamed Alshabi,
  • Basavaraj Vastrad,
  • Ibrahim Ahmed Shaikh and
  • Chanabasayya Vastrad

Breast cancer (BRCA) remains the leading cause of cancer morbidity and mortality worldwide. In the present study, we identified novel biomarkers expressed during estradiol and tamoxifen treatment of BRCA. The microarray dataset of E-MTAB-4975 from Ar...

  • Review
  • Open Access
252 Citations
32,836 Views
23 Pages

Flagella-Driven Motility of Bacteria

  • Shuichi Nakamura and
  • Tohru Minamino

The bacterial flagellum is a helical filamentous organelle responsible for motility. In bacterial species possessing flagella at the cell exterior, the long helical flagellar filament acts as a molecular screw to generate thrust. Meanwhile, the flage...

  • Article
  • Open Access
13 Citations
4,850 Views
13 Pages

Discovery and Rational Design of a Novel Bowman-Birk Related Protease Inhibitor

  • Yuxi Miao,
  • Guanzhu Chen,
  • Xinping Xi,
  • Chengbang Ma,
  • Lei Wang,
  • James F. Burrows,
  • Jinao Duan,
  • Mei Zhou and
  • Tianbao Chen

Anuran amphibian skin secretions are a rich source of peptides, many of which represent novel protease inhibitors and can potentially act as a source for protease inhibitor drug discovery. In this study, a novel bioactive Bowman-Birk type inhibitory...

  • Article
  • Open Access
9 Citations
3,897 Views
10 Pages

Association of Asymmetric Dimethylarginine and Diastolic Dysfunction in Patients with Hypertrophic Cardiomyopathy

  • Kathrin Cordts,
  • Doreen Seelig,
  • Natalie Lund,
  • Lucie Carrier,
  • Rainer H. Böger,
  • Maxim Avanesov,
  • Enver Tahir,
  • Edzard Schwedhelm and
  • Monica Patten

Despite genetic heterogeneity, early manifestation of diastolic dysfunction (DD) is common in hypertrophic cardiomyopathy (HCM). Nitric oxide (NO) may contribute to myocardial relaxation. NO synthases (NOS) use l-arginine (Arg) as a substrate, as asy...

  • Article
  • Open Access
27 Citations
5,679 Views
17 Pages

Triple-negative breast cancers (TNBCs) are hard-to-treat breast tumors with poor prognosis, which need to be treated by chemotherapy. Signal transducer and activator of transcription 3 (STAT3) is a transcription factor involved in proliferation, meta...

  • Article
  • Open Access
14 Citations
4,553 Views
11 Pages

High-Throughput Screening of Chlorella Vulgaris Growth Kinetics inside a Droplet-Based Microfluidic Device under Irradiance and Nitrate Stress Conditions

  • Marwa Gamal Saad,
  • Noura Sayed Dosoky,
  • Muhammad Shuja Khan,
  • Mohamed Shafick Zoromba,
  • Laila Mekki,
  • Magdy El-Bana,
  • David Nobles and
  • Hesham Mohamed Shafik

Biodiesel is an eco-friendly renewable fuel that can be derived from microalgae. Maximization of biomass and lipid productivities are considered the main challenges for algal biodiesel production. Since conventional batch cultures are time-, space-,...

  • Review
  • Open Access
24 Citations
5,240 Views
14 Pages

Ligand Binding and Signaling of HARE/Stabilin-2

  • Edward N. Harris and
  • Fatima Cabral

The Stabilin receptors are a two-member family in the type H class of scavenger receptors. These dynamic receptors bind and internalize multiple ligands from the cell surface for the purpose of clearing extracellular material including some synthetic...

  • Communication
  • Open Access
50 Citations
7,379 Views
8 Pages

tRNA-Derived Small Non-Coding RNAs as Novel Epigenetic Molecules Regulating Adipogenesis

  • Linyuan Shen,
  • Zhendong Tan,
  • Mailin Gan,
  • Qiang Li,
  • Lei Chen,
  • Lili Niu,
  • Dongmei Jiang,
  • Ye Zhao,
  • Jinyong Wang and
  • Li Zhu
  • + 2 authors

tRNA-derived fragments (tRFs), a novel type of non-coding RNA derived from tRNAs, play an important part in governing gene expressions at a post-transcriptional level. To date, the regulatory mechanism of tRFs governing fat deposition and adipogenesi...

  • Article
  • Open Access
27 Citations
7,255 Views

RETRACTED: Ailanthone Induces Cell Cycle Arrest and Apoptosis in Melanoma B16 and A375 Cells

  • Wenjing Liu,
  • Xiaona Liu,
  • Zhaohai Pan,
  • Dan Wang,
  • Minjing Li,
  • Xiaoyu Chen,
  • Ling Zhou,
  • Maolei Xu,
  • Defang Li and
  • Qiusheng Zheng

Malignant melanoma is the most lethal type of skin cancer. Previous studies have shown that ailanthone has potent antitumor activity in a variety of cell lines. However, the anti-tumor effect of ailanthone on malignant melanoma remains unclear. To in...

  • Review
  • Open Access
43 Citations
10,612 Views
14 Pages

Molecular Pathways Modulated by Curcumin Analogue, Diarylpentanoids in Cancer

  • Felicia Paulraj,
  • Faridah Abas,
  • Nordin H. Lajis,
  • Iekhsan Othman and
  • Rakesh Naidu

While curcumin has a range of therapeutic benefits, its potent anticancer activity remains an attractive avenue for anticancer research owing to the multifactorial nature of cancer itself. The structure of curcumin has thus been used as a lead to des...

  • Review
  • Open Access
75 Citations
17,107 Views
23 Pages

Role of Dietary Supplements in the Management of Parkinson’s Disease

  • Michele Ciulla,
  • Lisa Marinelli,
  • Ivana Cacciatore and
  • Antonio Di Stefano

The use of food supplements or functional food has significantly increased in the past decades, especially to compensate both the modern lifestyle and the food shortages of the industrialized countries. Despite food supplements are habitually intende...

  • Article
  • Open Access
11 Citations
4,316 Views
16 Pages

Analysis and Identification of Active Compounds from Gami-Soyosan Toxic to MCF-7 Human Breast Adenocarcinoma Cells

  • Mi-Yeon Jung,
  • Chang-Seob Seo,
  • Seon-Eun Baek,
  • Jaemin Lee,
  • Myoung-Sook Shin,
  • Ki Sung Kang,
  • Sullim Lee and
  • Jeong-Eun Yoo

Gami-soyosan is a medicinal herbal formulation prescribed for the treatment of menopausal symptoms, including hot flashes and osteoporosis. Gami-soyosan is also used to treat similar symptoms experienced by patients with breast cancer. The incidence...

  • Article
  • Open Access
79 Citations
4,967 Views
22 Pages

High Proton Conducting Polymer Blend Electrolytes Based on Chitosan:Dextran with Constant Specific Capacitance and Energy Density

  • Shujahadeen B. Aziz,
  • M. H. Hamsan,
  • Wrya O. Karim,
  • M. F. Z. Kadir,
  • M. A. Brza and
  • Omed Gh. Abdullah

Polymer blend electrolytes based on chitosan: dextran (CS:Dext) incorporated with various amounts of ammonium fluoride (NH4F) with constant specific capacitance (12.4 F/g) and energy density over 100 cycles were prepared using a solution cast techniq...

  • Article
  • Open Access
9 Citations
3,835 Views
11 Pages

Stilbenes, particularly resveratrol and resveratrol dimers, could effectively quench singlet oxygen (1O2). It was reported that both resorcinol and carbon-carbon double bond quenching 1O2 can participate in the mechanism. However, it is still not cle...

  • Review
  • Open Access
58 Citations
11,875 Views
54 Pages

The present review reports a list of approximately 800 compounds which have been used, tested or proposed for Parkinson’s disease (PD) therapy in the year range 2014–2019 (April): name(s), chemical structure and references are given. Among these comp...

  • Article
  • Open Access
19 Citations
5,429 Views
14 Pages

Effects of Ionic Liquid Alkyl Chain Length on Denaturation of Myoglobin by Anionic, Cationic, and Zwitterionic Detergents

  • Joshua Y. Lee,
  • Katherine M. Selfridge,
  • Eric M. Kohn,
  • Timothy D. Vaden and
  • Gregory A. Caputo

The unique electrochemical properties of ionic liquids (ILs) have motivated their use as solvents for organic synthesis and green energy applications. More recently, their potential in pharmaceutical chemistry has prompted investigation into their ef...

  • Article
  • Open Access
9 Citations
3,839 Views
9 Pages

Identification of MicroRNA Targeting Mlph and Affecting Melanosome Transport

  • Jeong Ah Lee,
  • Seok Joon Hwang,
  • Sung Chan Hong,
  • Cheol Hwan Myung,
  • Ji Eun Lee,
  • Jong Il Park and
  • Jae Sung Hwang

Melanosomes undergo a complex maturation process and migrate into keratinocytes. Melanophilin (Mlph), a protein complex involving myosin Va (MyoVa) and Rab27a, enables the movement of melanosomes in melanocytes. In this study, we found six miRNAs tar...

  • Review
  • Open Access
39 Citations
9,559 Views
10 Pages

Photosynthesis is a biochemical process essential for life, serving as the ultimate source of chemical energy for phototrophic and heterotrophic life forms. Since the machinery of the photosynthetic electron transport chain is quite complex and is un...

  • Article
  • Open Access
16 Citations
5,419 Views
11 Pages

Architecture of the Bacterial Flagellar Distal Rod and Hook of Salmonella

  • Yumiko Saijo-Hamano,
  • Hideyuki Matsunami,
  • Keiichi Namba and
  • Katsumi Imada

The bacterial flagellum is a large molecular complex composed of thousands of protein subunits for motility. The filamentous part of the flagellum, which is called the axial structure, consists of the filament, the hook, and the rods, with other mino...

  • Article
  • Open Access
70 Citations
8,136 Views
16 Pages

Ameliorative Effect of Beta vulgaris Root Extract on Chlorpyrifos-Induced Oxidative Stress, Inflammation and Liver Injury in Rats

  • Gadah Albasher,
  • Rafa Almeer,
  • Fatimah O. Al-Otibi,
  • Noorah Al-Kubaisi and
  • Ayman M. Mahmoud

Exposure to organophosphorus insecticides causes several health problems to animals and humans. Red beetroot (RBR) is rich in antioxidant ingredients and possesses a promising hepatoprotective activity. This study evaluated the potential of RBR extra...

  • Article
  • Open Access
34 Citations
4,609 Views
17 Pages

Formononetin Regulates Multiple Oncogenic Signaling Cascades and Enhances Sensitivity to Bortezomib in a Multiple Myeloma Mouse Model

  • Chulwon Kim,
  • Jong Hyun Lee,
  • Jeong-Hyeon Ko,
  • Arunachalam Chinnathambi,
  • Sulaiman Ali Alharbi,
  • Omar H.M. Shair,
  • Gautam Sethi and
  • Kwang Seok Ahn

Here, we determined the anti-neoplastic actions of formononetin (FT) against multiple myeloma (MM) and elucidated its possible mode of action. It was observed that FT enhanced the apoptosis caused by bortezomib (Bor) and mitigated proliferation in MM...

  • Article
  • Open Access
11 Citations
3,791 Views
14 Pages

Roles of Zinc Finger Protein 423 in Proliferation and Invasion of Cholangiocarcinoma through Oxidative Stress

  • Timpika Chaiprasert,
  • Napat Armartmuntree,
  • Anchalee Techasen,
  • Chadamas Sakonsinsiri,
  • Somchai Pinlaor,
  • Piti Ungarreevittaya,
  • Narong Khuntikeo,
  • Nisana Namwat and
  • Raynoo Thanan

Zinc finger protein 423 (ZNF423) is a transcriptional factor involved in the development and progression of cancers but has not yet been examined in cholangiocarcinoma (CCA), an oxidative stress-driven cancer of biliary epithelium. In this study, we...

  • Review
  • Open Access
97 Citations
9,372 Views
20 Pages

It is well known that biological systems, such as microorganisms, plants, and animals, including human beings, form spontaneous electronically excited species through oxidative metabolic processes. Though the mechanism responsible for the formation o...

  • Communication
  • Open Access
11 Citations
4,817 Views
9 Pages

In order to synthesize a promising material for developing a novel peptide/protein delivery system, guanidinylation of chitooligosaccharides with 1-amidinopyrazole hydrochloride was investigated herein. The production of guanidinylated chitooligosacc...

  • Communication
  • Open Access
54 Citations
5,931 Views
14 Pages

Betulinic Acid Suppresses Ovarian Cancer Cell Proliferation through Induction of Apoptosis

  • Dahae Lee,
  • Seoung Rak Lee,
  • Ki Sung Kang,
  • Yuri Ko,
  • Changhyun Pang,
  • Noriko Yamabe and
  • Ki Hyun Kim

Ovarian cancer is one of the leading causes of cancer deaths worldwide in women, and the most malignant cancer among the different gynecological cancers. In this study, we explored potentially anticancer compounds from Cornus walteri (Cornaceae), the...

  • Article
  • Open Access
9 Citations
3,675 Views
14 Pages

A Novel Kunitzin-Like Trypsin Inhibitor Isolated from Defensive Skin Secretion of Odorrana versabilis

  • Yanjing Dong,
  • Daning Shi,
  • Yuan Ying,
  • Xinping Xi,
  • Xiaoling Chen,
  • Lei Wang,
  • Mei Zhou,
  • Qinan Wu,
  • Chengbang Ma and
  • Tianbao Chen

Protease inhibitors that were identified from amphibian skin secretions with low molecular weights and potent inhibitory activity were thought to be potential candidates for novel peptide drugs. Here, a novel peptide with trypsin inhibitory activity...

  • Review
  • Open Access
69 Citations
13,522 Views
17 Pages

More than two decades ago a general method to genetically encode noncanonical or unnatural amino acids (NAAs) with diverse physical, chemical, or biological properties in bacteria, yeast, animals and mammalian cells was developed. More than 200 NAAs...

  • Article
  • Open Access
8 Citations
4,050 Views
12 Pages

Halogen-Substituted Derivatives of Dictyostelium Differentiation-Inducing Factor-1 Suppress Serum-Induced Cell Migration of Human Breast Cancer MDA-MB-231 Cells in Vitro

  • Kyoko Totsuka,
  • Yuka Makioka,
  • Kyoichi Iizumi,
  • Katsunori Takahashi,
  • Yoshiteru Oshima,
  • Haruhisa Kikuchi and
  • Yuzuru Kubohara

Triple-negative breast cancer (TNBC) is highly proliferative and metastatic, and because it lacks three major molecular targets for chemotherapy (estrogen receptor, progesterone receptor, and human epidermal receptor 2), it is extremely refractory. D...

  • Article
  • Open Access
2 Citations
4,124 Views
11 Pages

A Novel Approach for Investigating Upper Airway Hyperresponsiveness Using Micro-CT in Eosinophilic Upper Airway Inflammation such as Allergic Rhinitis Model

  • Dan Van Bui,
  • Akira Kanda,
  • Yoshiki Kobayashi,
  • Yoshiko Sakata,
  • Yumiko Kono,
  • Yoshiyuki Kamakura,
  • Takao Jinno,
  • Yasutaka Yun,
  • Kensuke Suzuki and
  • Hiroshi Iwai
  • + 7 authors

Airway hyperresponsiveness (AHR) has been proposed as a feature of pathogenesis of eosinophilic upper airway inflammation such as allergic rhinitis (AR). The measurement system for upper AHR (UAHR) in rodents is poorly developed, although measurement...

  • Article
  • Open Access
53 Citations
7,724 Views
23 Pages

Isoform-Specific Role of Akt in Oral Squamous Cell Carcinoma

  • Nand Kishor Roy,
  • Javadi Monisha,
  • Ganesan Padmavathi,
  • H. Lalhruaitluanga,
  • Nachimuthu Senthil Kumar,
  • Anuj Kumar Singh,
  • Devivasha Bordoloi,
  • Munindra Narayan Baruah,
  • Gazi Naseem Ahmed and
  • Ajaikumar B. Kunnumakkara
  • + 3 authors

Protein kinase B (Akt) plays a very significant role in various cancers including oral cancer. However, it has three isoforms (Akt1, Akt2, and Akt3) and they perform distinct functions and even play contrasting roles in different cancers. Therefore,...

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Biomolecules - ISSN 2218-273X