Identification of AREB/ABF Gene Family Involved in the Response of ABA under Salt and Drought Stresses in Jute (Corchorus olitorius L.)
Abstract
:1. Introduction
2. Results
2.1. Identification and Characteristics of AREB/ABFs in Jute
2.2. Phylogenetic Relationship and Sequence Analysis of AREB/ABFs in C. olitorius
2.3. Gene Structure and Conserved Motif Analyses of AREB/ABF Family Members in Jute
2.4. Chromosomal Distribution and Gene Duplication Analysis of CoABF Genes
2.5. cis-Element Analysis of AREB/ABF Gene Family in C. olitorius
2.6. Analysis of AREB/ABF Protein Network Interactions and Gene Ontology Annotation
2.7. Homology Modeling of CoABF Proteins
2.8. Expression Pattern of CoABF Genes under ABA Treatment Using Quantitative Real-Time PCR(qRT-PCR)
2.9. Expression Levels of CoABF3 and CoABF7 under PEG and PEG+ABA Treatments
2.10. Expression Levels of CoABF3 and CoABF7 under ST and ST+ABA Treatments
3. Discussion
4. Materials and Methods
4.1. Sequencing Analysis and Identification of AREB/ABF Gene Family in Jute
4.2. Protein Characterization and Chromosome Distribution Map of CoABF Genes
4.3. Gene Structure and Conserved Motifs Analysis of CoABF Genes
4.4. Gene Duplication and Ka (Nonsynonymous)/Ks (Synonymous) Ratio Analysis of CoABF Genes
4.5. Gene Ontology (GO) Enrichment, Protein Interaction Network, and cis-Elements Analysis of CoABF Genes
4.6. Homology Modeling of CoABF Proteins
4.7. Plant Materials and Growing Conditions
4.8. qRT-PCR Validation
4.9. Statistical Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Gene | Gene Id | Theoretical pI | Molecular Mass (kDa) | Protein Length (aa) | Coding Sequence (CDS) Length | Sub-Cellular Location |
---|---|---|---|---|---|---|
CoABF1 | Co.02G0034250 | 9.86 | 27.67 | 253 | 762 | Nuclear |
CoABF2 | Co.04G0023530 | 6.67 | 33.45 | 295 | 885 | Nuclear |
CoABF3 | Co.04G0028660 | 9.36 | 49.05 | 457 | 1374 | Nuclear |
CoABF4 | Co.06G0010990 | 8.8 | 35.80 | 321 | 966 | Nuclear |
CoABF5 | Co.07G0004410 | 9.52 | 23.62 | 215 | 648 | Nuclear |
CoABF6 | Co.07G0011920 | 9.1 | 41.88 | 378 | 1137 | Nuclear |
CoABF7 | Co.v20117110 | 9.19 | 53.94 | 493 | 1482 | Nuclear |
CoABF8 | Co.v20124440 | 8.48 | 63.11 | 575 | 1728 | Nuclear |
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Fiallos-Salguero, M.S.; Li, J.; Li, Y.; Xu, J.; Fang, P.; Wang, Y.; Zhang, L.; Tao, A. Identification of AREB/ABF Gene Family Involved in the Response of ABA under Salt and Drought Stresses in Jute (Corchorus olitorius L.). Plants 2023, 12, 1161. https://doi.org/10.3390/plants12051161
Fiallos-Salguero MS, Li J, Li Y, Xu J, Fang P, Wang Y, Zhang L, Tao A. Identification of AREB/ABF Gene Family Involved in the Response of ABA under Salt and Drought Stresses in Jute (Corchorus olitorius L.). Plants. 2023; 12(5):1161. https://doi.org/10.3390/plants12051161
Chicago/Turabian StyleFiallos-Salguero, Manuel Sebastian, Jing Li, Yunqing Li, Jiantang Xu, Pingping Fang, Yankun Wang, Liwu Zhang, and Aifen Tao. 2023. "Identification of AREB/ABF Gene Family Involved in the Response of ABA under Salt and Drought Stresses in Jute (Corchorus olitorius L.)" Plants 12, no. 5: 1161. https://doi.org/10.3390/plants12051161