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Biophysica, Volume 1, Issue 2

2021 June - 13 articles

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Articles (13)

  • Article
  • Open Access
1 Citations
3,101 Views
20 Pages

Use of Magnetic Nanoparticles as In Situ Mucus Property Probe

  • Ming Chih Tsai,
  • River Gassen and
  • Kathrin Spendier

18 June 2021

Magnetic nanoparticles (MNPs) are unique in their abilities to penetrate and interact with a wide range of liquid media. Because of their magnetic properties, MNPs can be directed to any area of interest, and interact with core structures deep inside...

  • Article
  • Open Access
3 Citations
4,119 Views
11 Pages

Modelling the Activation Pathways in Full-Length Src Kinase

  • Josephine Alba,
  • Maria Montagna and
  • Marco D’Abramo

11 June 2021

Src kinases play fundamental roles in several crucial cell processes. Their activity is tightly regulated by conformational transitions between the active and the inactive forms, which are carried out by complex protein structural rearrangements. Her...

  • Article
  • Open Access
3,571 Views
16 Pages

8 June 2021

The heterogeneous composition of tumors presents a significant obstacle to the selection of a single molecule as a potential universal inhibitor of tumor growth. Lipid signaling and cellular metabolism have become the main targets of anticancer treat...

  • Article
  • Open Access
12 Citations
5,213 Views
18 Pages

The Dynamics of Subunit Rotation in a Eukaryotic Ribosome

  • Frederico Campos Freitas,
  • Gabriele Fuchs,
  • Ronaldo Junio de Oliveira and
  • Paul Charles Whitford

24 May 2021

Protein synthesis by the ribosome is coordinated by an intricate series of large-scale conformational rearrangements. Structural studies can provide information about long-lived states, however biological kinetics are controlled by the intervening fr...

  • Article
  • Open Access
6 Citations
6,064 Views
10 Pages

SARS-CoV-2 Spike-Derived Peptides Presented by HLA Molecules

  • Andrea T. Nguyen,
  • Christopher Szeto,
  • Dhilshan Jayasinghe,
  • Christian A. Lobos,
  • Hanim Halim,
  • Demetra S. M. Chatzileontiadou,
  • Emma J. Grant and
  • Stephanie Gras

19 May 2021

The SARS-CoV-2 virus responsible for the COVID-19 pandemic has caused significant morbidity and mortality worldwide. With the remarkable advances in medical research, vaccines were developed to prime the human immune system and decrease disease sever...

  • Article
  • Open Access
5 Citations
3,960 Views
15 Pages

Energy Dissipation Hypothesis Applied to Enhance the Affinity of Thrombin Binding Aptamer

  • Gleb Zhdanov,
  • Alexander Arutyunyuan,
  • Alexey Kopylov and
  • Elena Zavyalova

14 May 2021

Nucleic acid aptamers are artificial recognizing molecules that are capable of specific binding to a wide variety of targets. Aptamers are commonly selected from a huge library of oligonucleotides and improved by introducing several mutations or modu...

  • Article
  • Open Access
2 Citations
3,052 Views
11 Pages

Antifreeze glycoproteins (AFGPs) found in various fish are used by the organisms to prevent freezing. While these compounds have been studied for their ability to bind to, and prevent the complete crystallization of water, the exact mechanisms by whi...

  • Article
  • Open Access
1 Citations
4,781 Views
11 Pages

8 April 2021

Protein contact networks (PCNs) have been used for the study of protein structure and function for the past decade. In PCNs, each amino acid is considered as a node while the contacts among amino acids are the links/edges. We examined the possible co...

  • Review
  • Open Access
25 Citations
6,225 Views
20 Pages

Amyloid-Mediated Mechanisms of Membrane Disruption

  • Michele F. M. Sciacca,
  • Carmelo La Rosa and
  • Danilo Milardi

7 April 2021

Protein aggregation and amyloid formation are pathogenic events underlying the development of an increasingly large number of human diseases named “proteinopathies”. Abnormal accumulation in affected tissues of amyloid β (Aβ) peptide, islet amyloid p...

  • Article
  • Open Access
7 Citations
4,862 Views
11 Pages

Cytotoxicity of Quillaja saponaria Saponins towards Lung Cells Is Higher for Cholesterol-Rich Cells

  • Natalia Kozińska,
  • Katarzyna Tokarska,
  • Michał Chudy and
  • Kamil Wojciechowski

6 April 2021

The purpose of the study was to compare cytotoxicity of two Quillaja saponaria bark saponin (QBS) mixtures against two lung cell lines: normal MRC-5 fibroblast cell line and tumor A-549 epithelial cells of lungs’ alveoli. The study, performed both at...

  • Review
  • Open Access
11 Citations
5,284 Views
20 Pages

30 March 2021

Membrane proteins are essential for the survival of living organisms. They are involved in important biological functions including transportation of ions and molecules across the cell membrane and triggering the signaling pathways. They are targets...

  • Article
  • Open Access
5 Citations
3,952 Views
19 Pages

25 March 2021

Despite the long history of using protein sequences to infer the tree of life, the potential for different parts of protein structures to retain historical signal remains unclear. We propose that it might be possible to improve analyses of phylogenom...

  • Article
  • Open Access
6 Citations
3,652 Views
11 Pages

Nanomarker for Early Detection of Alzheimer’s Disease Combining Ab initio DFT Simulations and Molecular Docking Approach

  • Patricia Ferreira Schopf,
  • Ivana Zanella,
  • M. Natália D. S. Cordeiro,
  • Juan M. Ruso,
  • Michael González-Durruthy and
  • Mirkos Ortiz Martins

24 March 2021

The tau protein is considered an important qualitative and quantitative biomarker for Alzheimer’s disease in its asymptomatic phase. In 2011, biomarkers were suggested by the National Institute on Aging-Azheimer’s Association as a new criterion for t...

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Biophysica - ISSN 2673-4125