Editor’s Choice Articles

The loss of aquatic biodiversity is increasing at a rapid rate globally. There is a worldwide effort to protect, preserve and restore aquatic ecosystems. For efficient biodiversity monitoring and reliable management tools, comprehensive biodiversity data are required. The abundance and species diversity of benthic macroinvertebrates are commonly used as indicators of the aquatic ecosystem condition. Currently, macroinvertebrate species biodiversity assessment is based on morpho-taxonomy, which could be enhanced by recent advances in DNA-based tools for species identification. In particular, DNA metabarcoding has the potential to identify simultaneously many different taxa in a pool of species and to improve aquatic biomonitoring significantly, especially for indicator species. This review is focused on the current state of DNA-based aquatic biomonitoring using benthic macroinvertebrates in the Mediterranean region. Full article

The study examined the extent of the cetacean strandings in Italy, with a particular focus on Sicily Island. The paper aimed to contribute to the description of a pattern that contemplates the “regular and rare” cetacean species passage along the Sicilian coast. The estimate of marine cetacean strandings was extrapolated from the National Strandings Data Bank (BDS—Banca Dati Spiaggiamenti) and evaluated according to a subdivision in three coastal subregions: the Tyrrhenian sub-basin (northern Sicilian coast), the Ionian sub-basin (eastern Sicilian coast), and the Channel of Sicily (southern Sicilian coast). Along the Italian coast, more than 4880 stranding events have been counted in the period 1990–2019. Most of these were recorded in five Italian regions: Apulia, Sicily, Sardinia, Tuscany, and Calabria. Approximately 15% of the recorded strandings in Italy occurred on the Sicilian coast. In Sicily Island, 725 stranded cetaceans were recorded in 709 stranding events, resulting in approximately 20 carcasses every year; the total number of specimens identified to species level was 539. The distribution along the Sicilian coast was the following: 312 recorded in the Tyrrhenian sub-basin, 193 in the Ionian sub-basin, and 220 in the Channel of Sicily. Stenella coeruleoalba was the species that can be considered as the stable record along the time-lapse investigated, and some rare species have been recorded as well. The role of Sicily Island as a sentinel territory of the cetacean distribution for the central Mediterranean Sea and as a region receiving a marine resource suitable for the scientific research and cetological museum collections is discussed herein. Full article

Determining migratory connectivity within and among diverse taxa is crucial to their conservation. Insect migrations involve millions of individuals and are often spectacular. However, in general, virtually nothing is known about their structure. With anthropogenically induced global change, we risk losing most of these migrations before they are even described. We used stable hydrogen isotope (δ²H) measurements of wings of seven species of butterflies (Libytheana carinenta, Danaus gilippus, Phoebis sennae, Asterocampa leilia, Euptoieta claudia, Euptoieta hegesia, and Zerene cesonia) salvaged as roadkill when migrating in fall through a narrow bottleneck in northeast Mexico. These data were used to depict the probabilistic origins in North America of six species, excluding the largely local E. hegesia. We determined evidence for long-distance migration in four species (L. carinenta, E. claudia, D. glippus, Z. cesonia) and present evidence for panmixia (Z. cesonia), chain (Libytheana carinenta), and leapfrog (Danaus gilippus) migrations in three species. Our investigation underlines the utility of the stable isotope approach to quickly establish migratory origins and connectivity in butterflies and other insect taxa, especially if they can be sampled at migratory bottlenecks. We make the case for a concerted effort to atlas butterfly migrations using the stable isotope approach. Full article

We review the variety of morphological, physiological and behavioral modifications that annelids have acquired to cope with environments either unsuitable for, or on the limits of, survival for most animals. We focus on polychaetes (excluding sipunculans and echiurans) and clitellates (oligochaetes and leeches) and source information mostly from the primary literature. We identified many modifications common to both polychaetes and clitellates, and others that are specific to one or the other group. For example, certain land-adapted polychaetes show reduction in nuchal organs, epidermal ciliation and receptor cells, and other coastal polychaetes use adhesive glands and glue-reinforced tubes to maintain position in surf zones, while oligochaetes, with their simple body plans, appear to be ‘pre-adapted’ to life underground. Modifications common to both groups include the ability to construct protective cocoons, make cryoprotective substances such as antifreeze and heat shock proteins, develop gills, transform their bodies into a home for symbiotic chemoautotrophic bacteria, metabolize contaminants, and display avoidance behaviors. Convergent evolution in both directions has enabled annelids to transition from salt water to freshwater, sea to land via beaches, freshwater to soil, and surface water to subterranean water. A superficially simple worm-like body and a mostly benthic/burrowing lifestyle has facilitated radiation into every conceivable environment, making annelids among the most common and diverse animal groups on the planet. Full article

The inselbergs of the Central Highlands of Madagascar are one of many ‘micro-hotspots’ of biodiversity on the island, particularly for Orchidaceae. In this region are several genera that have a large number of endemic species that are in serious decline or edging towards extinction. Studies relating to diversity of orchids and their fungal partners (both mycorrhizal and non-mycorrhizal root associates) deserve more attention, as climate change and human induced decline in resilience of species in the wild is at an all-time high. Identification of mycorrhizal fungi (MF) via conventional seed baited-protocorms has limitations for large scale studies and its application for time-bound conservation projects. The paper describes the value of understanding fungal diversity in the roots of orchids at different stages of maturity. The first part of the study was a preliminary investigation mainly to identify culturable Rhizoctonia endophytes, and the second part looked at all life forms of available taxa together with associated soil characteristics. We isolated and identified 19 putative MF from 18 of the 50 taxa spread over an area of 250 sq. km, covering three life forms, growth phases of the orchid taxa, and habitat types. In the rest of the taxa, we were unable to detect any putative MF, but had varying numbers of non-mycorrhizal endophytes. We also found that diversity of putative MF was higher in plants from soils with the lowest P levels recorded. Putative mycorrhizal OTUs were predominantly from the Tulasnella lineage, followed by Ceratobasidium and Serendipita. Within a small subset of samples, a difference in colonised endophytes depending on the collection season was observed. In vitro germination studies using 10 OTUs of mycorrhizal fungi in 14 orchid species showed mostly generalist associations. When orchid seed and fungal sources were studied irrespective of habitat, life form, and distance from each other (orchid seed and fungal source), compatibility for symbiotic seed germination was observed in most cases. Issues with the identification of compatible MF and symbiotic system of seed germination are discussed. Full article

Land use influences the composition of near-surface airborne bacterial communities, and bacteria can be transported through the atmosphere at global scales. The atmosphere mixes vertically, but rigorously assessing whether the effects of land use on atmospheric communities extends to higher altitudes requires examining communities from multiple altitudes collected at a stable location and timeframe. In this study, we collected near-surface (<2 m) and higher-altitude (150 m) air samples from three sites in an agricultural/developed location and a forested/undeveloped location. We used bacterial 16S rRNA amplicon sequencing to compare communities and predict functionality by altitude. Higher-altitude and near-surface communities did not differ in composition within each location. Communities collected above the undeveloped location were equally variable at both altitudes; higher-altitude samples from the developed location predominantly contained Firmicutes and were less variable than near-surface samples. We also compared airborne taxa to those present in soil and snow. Communities from higher-altitude samples above the developed location contained fewer overlapping taxa with soil and snow sources, and overlapping Operational Taxonomic Units (OTUs) among the three sources differed by location. Our results suggest that land use affects the composition of both near-surface and higher-altitude airborne bacterial communities and, therefore, may influence broad bacterial dispersal patterns. This small-scale pilot study provides a framework for simultaneously examining local and regional airborne microbial communities that can be applied to larger studies or studies using different types of samplers. Full article

Members of the following marine annelid families are found almost exclusively in the interstitial environment and are highly adapted to move between sand grains, relying mostly on ciliary locomotion: Apharyngtidae n. fam., Dinophilidae, Diurodrilidae, Nerillidae, Lobatocerebridae, Parergodrilidae, Polygordiidae, Protodrilidae, Protodriloididae, Psammodrilidae and Saccocirridae. This article provides a review of the evolution, systematics, and diversity of these families, with the exception of Parergodrilidae, which was detailed in the review of Orbiniida by Meca, Zhadan, and Struck within this Special Issue. While several of the discussed families have previously only been known by a few described species, recent surveys inclusive of molecular approaches have increased the number of species, showing that all of the aforementioned families exhibit a high degree of cryptic diversity shadowed by a limited number of recognizable morphological traits. This is a challenge for studies of the evolution, taxonomy, and diversity of interstitial families as well as for their identification and incorporation into ecological surveys. By compiling a comprehensive and updated review on these interstitial families, we hope to promote new studies on their intriguing evolutionary histories, adapted life forms and high and hidden diversity. Full article

The Western Palearctic is one of the most investigated regions for avian haemosporidian parasites (Haemoproteus, Plasmodium and Leucocytozoon), yet geographic gaps in our regional knowledge remain. Here, we report the first haemosporidian screening of the breeding birds from Sardinia (the second-largest Mediterranean Island and a biodiversity hotspot), and the first for the insular Mediterranean in general. We examined the occurrence of haemosporidians by amplifying their mtDNA cytb gene in 217 breeding birds, belonging to 32 species. The total prevalence of infected birds was 55.3%, and of the 116 haplotypes recovered, 84 were novel. Despite the high number of novel lineages, phylogenetic analysis did not highlight Sardinia-specific clades; instead, some Sardinian lineages were more closely related to lineages previously recovered from continental Europe. Host-parasite network analysis indicated a specialized host-parasite community. Binomial generalized linear models (GLMs), performed at the community level, suggested an elevational effect on haemosporidian occurrence probability (negative for Haemoproteus; positive for Leucocytozoon) likely due to differences in the abundance of insect vectors at different elevations. Furthermore, a GLM revealed that sedentary birds showed a higher probability of being infected by novel haplotypes and long-distance migrants showed a lower probability of novel haplotype infection. We hypothesize that the high diversity of haemosporidians is linked to the isolation of breeding bird populations on Sardinia. This study adds to the growing knowledge on haemosporidians lineage diversity and distribution in insular environments and presents new insights on potential host-parasite associations. Full article

In this study, we analyze the current state of knowledge on extant Eunicida systematics, morphology, feeding, life history, habitat, ecology, distribution patterns, local diversity and exploitation. Eunicida is an order of Errantia annelids characterized by the presence of ventral mandibles and dorsal maxillae in a ventral muscularized pharynx. The origin of Eunicida dates back to the late Cambrian, and the peaks of jaw morphology diversity and number of families are in the Ordovician. Species richness is heterogeneous among the seven recent families, with more than half of the valid species belonging to the Eunicidae + Onuphidae clade, one of the latest clades to diverge. Eunicidans inhabit soft and hard substrates from intertidal to deep waters in all oceans. The few freshwater species are restricted to Histriobdellidae, a family exclusively commensal/parasite of crustaceans. The reproductive biology, development and ecology of most families are poorly known and the information available suggests low dispersal ability. However, all families have records of widely distributed species. Scrutiny of these wide distributions has often revealed the presence of exotic species or more than one species. The exploration of the deep-sea and of new habitats has led to recent descriptions of new species. Furthermore, the revision of type specimens, the examination of new morphological features and the use of molecular data have revealed hidden biodiversity under unjustified synonyms, poor understanding of morphological features and incomplete descriptions. Molecular studies are still very few or nonexistent for the families Histriobdellidae, Hartmaniellidae, Lumbrineridae and Oenonidae. The integration of new methodologies for morphological and molecular study, along with information on biological and ecological traits appears to be the path to improve the knowledge on the diversity of Eunicida. Full article

The effects of human disturbance spread over virtually all ecosystems and ecological communities on Earth. In this review, we focus on the effects of human disturbance on terrestrial apex predators. We summarize their ecological role in nature and how they respond to different sources of human disturbance. Apex predators control their prey and smaller predators numerically and via behavioral changes to avoid predation risk, which in turn can affect lower trophic levels. Crucially, reducing population numbers and triggering behavioral responses are also the effects that human disturbance causes to apex predators, which may in turn influence their ecological role. Some populations continue to be at the brink of extinction, but others are partially recovering former ranges, via natural recolonization and through reintroductions. Carnivore recovery is both good news for conservation and a challenge for management, particularly when recovery occurs in human-dominated landscapes. Therefore, we conclude by discussing several management considerations that, adapted to local contexts, may favor the recovery of apex predator populations and their ecological functions in nature. Full article

Landraces are an agri-food and historical-cultural heritage but are undergoing losses worldwide. Italy is taking action to counteract this problem by following European guidelines. One of the most important measures is the Agrobiodiversity National Register (ANR), but 12 Italian regions currently appear without any landraces and around 80% of the landraces listed are trees, with less detailed data on herbaceous species. The aim of this study is to investigate the situation for Italian herbaceous landraces preserved on farms (in situ) by merging and analyzing data contained in the main databases on plant agrobiodiversity in Italy. Data were georeferenced, organized by botanic families and Italian regions, and analyzed by GIS and R. A total of 1615 herbaceous landraces were found (versus the 416 recorded in the ANR). Poaceae, Fabaceae, and Solanaceae together comprise 70% of all herbaceous landraces and are mostly preserved/grown in areas between 150 and 800 m a.s.l. Some hilly and sub-mountain areas of the Apennines and the Alps are hotspots of herbaceous landraces due to anthropic and environmental factors. The results of this research will be useful to enrich the ANR and trigger actions of characterization, conservation, and promotion of these plant resources. Full article

Within the genus Centaurea L., polyploidy is very common, and it is believed that, as to all angiosperms, it was key in the history of its diversification and evolution. Centaurea tentudaica is a hexaploid from subsect. Chamaecyanus of unknown origin. In this study, we examined the possible autopolyploid or allopolyploid origin using allozymes and sequences of three molecular markers: nuclear-ribosomic region ETS, and low-copy genes AGT1 and PgiC. We also included three species geographically and morphologically close to C. tentudaica: C. amblensis, C. galianoi, and C. ornata. Neighbor-Net and Bayesian analyses show a close relationship between C. amblensis and C. tentudaica and no relationship to any of the other species, which suggest that C. tentudaica is an autopolyploid of C. amblensis. Allozyme banding pattern also supports the autopolyploidy hypothesis and shows high levels of genetic diversity in the polyploid, which could suggest multiple origins by recurrent crosses of tetraploid and diploid cytotypes of C. amblensis. Environmental niche modeling was used to analyze the distribution of the possible parental species during the present, Last Glacial Maximum (LGM), Last Interglacial Period (LIG), and Penultimate Glacial Maximum (PGM) environmental conditions. Supporting the molecular suggestions that C. tentudaica originated from C. amblensis, environmental niche modeling confirms that past distribution of C. amblensis overlapped with the distribution of C. tentudaica. Full article

Many corals and reef-dwelling organisms are susceptible to the impacts of storm events, which are typically characterized by large inputs of freshwater, sediment, and nutrients. The majority of storm effects are focused on shallow, nearshore reef flats, as low salinity and sedimentation tend to dissipate with depth and distance from shore. In April 2018, record rainfall on the northern coast of Kaua‘i caused extensive flooding and landslides, introducing large amounts of freshwater and sediment into nearshore reefs. Using benthic and fish transects from 2016–2019 and temperature, sediment, and rainfall data gathered pre- and post-flood, this study aimed to quantify and explicate the effects of flooding on the various biotic populations of two reef habitats at Pila‘a and Hā‘ena, Kaua‘i. Results from the shallow Pila‘a reef suggest sediment and freshwater-associated declines in mean urchin abundance (−52.0%) and increases in mean coral bleaching (+54.5%) at the flood-prone eastern sector. Additionally, decreases in mean urchin (−65.7%) and fish (−42.3%) populations were observed at shallow Hā‘ena transects, but not deep sites, supporting the occurrence of depth-specific affliction. Multivariate community-level analyses affirmed much of these results, showing a significant shift in community structure before and after the flood at both Pila‘a and Hā‘ena. The outcomes of this study are pertinent to strategic design and solution development by local aquatic resource managers, especially as anthropogenic climate change continues to increase the frequency, duration, and intensity of storm events. Full article

Extinction risk is increasing for a range of species due to a variety of threats, including disease. Emerging infectious diseases can cause severe declines in wild animal populations, increasing population fragmentation and reducing gene flow. Small, isolated, host populations may lose adaptive potential and become more susceptible to extinction due to other threats. Management of the genetic consequences of disease-induced population decline is often necessary. Whilst disease threats need to be addressed, they can be difficult to mitigate. Actions implemented to conserve the Tasmanian devil (Sarcophilus harrisii), which has suffered decline to the deadly devil facial tumour disease (DFTD), exemplify how genetic management can be used to reduce extinction risk in populations threatened by disease. Supplementation is an emerging conservation technique that may benefit populations threatened by disease by enabling gene flow and conserving their adaptive potential through genetic restoration. Other candidate species may benefit from genetic management via supplementation but concerns regarding outbreeding depression may prevent widespread incorporation of this technique into wildlife disease management. However, existing knowledge can be used to identify populations that would benefit from supplementation where risk of outbreeding depression is low. For populations threatened by disease and, in situations where disease eradication is not an option, wildlife managers should consider genetic management to buffer the host species against inbreeding and loss of genetic diversity. Full article

This is the first review of the helminth fauna of the moor frog Rana arvalis Nilsson, 1842 from the Volga river basin (Russia). The article summarizes the authors’ and literature data on the helminthic fauna of this species. The method of complete helminthological dissection was used. Thirthy-eight helminth species were recorded from three classes: Cestoda (1), Trematoda (28), and Chromadorea (9). Nine helminth species are new to the moor frog in Russia: trematodes Gorgodera varsoviensis Sinitzin, 1905, Strigea falconis Szidat, 1928, larvae, Neodiplostomum spathoides Dubois, 1937, larvae, Tylodelphys excavata (Rudolphi, 1803), larvae, Pharyngostomum cordatum (Diesing, 1850), larvae, Astiotrema monticelli Stossich, 1904, larvae and Encyclometra colubrimurorum (Rudolphi, 1819), larvae, nematodes Strongyloides spiralis Grabda-Kazubska, 1978 and Icosiella neglecta (Diesing, 1851). The cestode Spirometra erinacei (Rudolphi, 1918), larvae were observed of this amphibian species in the Volga basin for the first time. The nematodes Rhabdias bufonis, Oswaldocruzia filiformis, Cosmocerca ornata and the trematode Haplometra cylindracea form the core of the helminth fauna of the moor frog. Information on species of helminths includes systematic position, localization, areas of detection, type and scheme of life cycle, geographical distribution, and degree of specificity to host amphibians. Full article

Terebelliformia comprises a large group of sedentary polychaetes which live from the intertidal to the deep sea. The majority live in tubes and are selective deposit feeders. This study synthesises the current knowledge of this group, including their distribution, in the different biogeographic regions. We highlight the new methodologies being used to describe them and the resolution of species complexes occurring in the group. The main aim of this review is to highlight the knowledge gaps and to stimulate research in those directions, which will allow for knowledge of their distribution and abundances to be used by ecologists and managers. Full article

Soil fauna is generally understudied compared to above-ground arthropods, and ants are no exception. Here, we compared a primary and a secondary forest each on two continents using four different sampling methods. Winkler sampling, pitfalls, and four types of above- and below-ground baits (dead, crushed insects; melezitose; living termites; living mealworms/grasshoppers) were applied on four plots (4 × 4 grid points) on each site. Although less diverse than Winkler samples and pitfalls, subterranean baits provided a remarkable ant community. Our baiting system provided a large dataset to systematically quantify strata and dietary specialisation in tropical rainforest ants. Compared to above-ground baits, 10–28% of the species at subterranean baits were overall more common (or unique to) below ground, indicating a fauna that was truly specialised to this stratum. Species turnover was particularly high in the primary forests, both concerning above-ground and subterranean baits and between grid points within a site. This suggests that secondary forests are more impoverished, especially concerning their subterranean fauna. Although subterranean ants rarely displayed specific preferences for a bait type, they were in general more specialised than above-ground ants; this was true for entire communities, but also for the same species if they foraged in both strata. Full article

Sipuncula, long considered a separate phylum, are now commonly included in the Annelida based on phylogenomic analyses. The sipunculan body consists of an unsegmented trunk and a retractable introvert, usually with a set of tentacles at its anterior end. Unlike other annelids, they have no chaetae, but the introvert is often adorned with proteinaceous hooks that can be important taxonomic characters. Other external taxonomic characters include the tentacles (number, shape and arrangement), body papillae and, in some cases, hardened shields, as well as length ratios. Many species require dissection for correct identification to reveal internal characteristics, such as introvert retractor muscles, nephridia and contractile vessels. Here we summarize the state of the current knowledge of species diversity in sipunculans. We emphasize molecular studies, conducted over the past two decades, that have revealed multiple complexes of cryptic or pseudocryptic species. It has become obvious that diversity is significantly higher than the current taxonomic scheme accounts for, but formal species descriptions are lagging behind. Although the major branches in the sipunculan phylogeny have become increasingly consolidated, the internal relationships within most branches are still in flux. Full article

Palaeoannelida Weigert and Bleidorn, 2016 is an old clade branching off at the base of the Annelida radiation. It includes two morphologically and ecological divergent groups of sedentary burrowers and tube-dwellers: Magelonidae Cunningham and Ramage, 1888, and Oweniidae Rioja, 1917. Magelonids are characterised by a flattened, shovel-shaped prostomium and a pair of ventral papillated palps. Oweniids have simplified bodies lacking parapodia or appendages and are easily distinguished by the presence of oval patches of packed uncini, each with two distal curved teeth. The present review aims to summarise available information about the diversity of forms and life strategies displayed in the group, providing some guidelines for species identification and the techniques commonly used for their study. In addition, the assumed geographic distributions of some taxa are critically discussed. A brief introduction about the evolutionary relationships, systematics, and taxonomic history is given for both Magelonidae and Oweniidae. The motivation of this review is to highlight the main knowledge gaps from a taxonomic, methodological, and geographic perspective, aiming at stimulating further research into members of this clade. Full article

Methods for species delimitation using molecular data have developed greatly and have become a staple in systematic studies of clitellate worms. Here we give a historical overview of the data and methods used to delimit clitellates from the mid-1970s to today. We also discuss the taxonomical treatment of the cryptic species, including the recommendation that cryptic species, as far as possible, should be described and named. Finally, we discuss the prospects and further development of the field. Full article

The southern extent of the boreal forest in North America has experienced intensive human disturbance in recent decades. Among these, forest harvesting leads to the substantial loss of late-successional stands that include key habitat attributes for several avian species. The American Three-toed Woodpecker, Picoides dorsalis, is associated with continuous old spruce forests in the eastern part of its range. In this study, we assessed the influence of habitat characteristics at different scales on the occupancy of American Three-toed Woodpecker in a heavily-managed boreal landscape of northeastern Canada, and we inferred species occupancy at the regional scale. We conducted 185 playback stations over two breeding seasons and modelled the occupancy of the species while taking into account the probability of detection. American Three-toed Woodpecker occupancy was lower in stands with large areas recently clear-cut, and higher in landscapes with large extents of old-growth forest dominated by black spruce. At the regional scale, areas with high probability of occupancy were scarce and mostly within protected areas. Habitat requirements of the American Three-toed Woodpecker during the breeding season, coupled with overall low occupancy rate in our study area, challenge its long-term sustainability in such heavily managed landscapes. Additionally, the scarcity of areas of high probability of occupancy in the region suggests that the ecological role of old forest outside protected areas could be compromised. Full article

The effects of herbivorous insects on a plant population are not always well tolerated. This is especially true if the herbivorous actions are directed toward rare plant species. Salvia ceratophylloides Ard. is a rare endemism of southern Italy. Observations of the plants in situ revealed that many of them were under severe stress and did not produce seeds. Therefore, to find out which factors affect the reproductive activity as a whole, an observational study was carried out. We found bottom-up and top-down effects on plant health and reproduction associated with herbivorous action. Squamapion elongatum (Coleoptera, Curculionoidea, Apionidae), in all monitored sites, infested plants non-uniformly but was able to threaten the health condition, flowering, and seed production of sage by digging tunnels into the sage branches (bottom-up action), and then secondarily by seed feeder Systole salvia Zerova (Hymenoptera, Eurytomidae) predating sage seeds (top-down action). Mainly, chalcid parasitoid wasps such as Trichomalus spp. (Hymenoptera, Pteromalidae), as well as Eupelmus vesicularis and E. muellneri (Hymenoptera, Eupelmidae), limited the herbivorous S. elongatum population and the seed herbivore S. salviae emerged with its parasitoid Ormyrus diffinis (Hymenoptera, Ormyridae). Overall, this study showed how ecological interactions among herbivores, their host, and their natural enemies act on this sage species in all sites investigated. Among the herbivores, mainly S. elongatum affected this rare sage species, which should be taken into consideration, especially in the formulation of biological control solutions and for improving operating practice aimed at reproducing the species. This study provides the molecular characterization of the herbivorous species involved, in order to support future projects to evaluate the intra- and interspecific genetic variability of insects, their evolutionary relationships, and phylogeny studies. Full article

Animal behavior is greatly shaped by the ‘landscape of fear’, induced by predation risk, and the equivalent ‘landscape of disgust’, induced by parasitism or infection risk. However, the role that carrion may play in these landscapes of peril has been largely overlooked. Here, we aim to emphasize that animal carcasses likely represent ubiquitous hotspots for both predation and infection risk, thus being an outstanding paradigm of how predation and parasitism pressures can concur in space and time. By conducting a literature review, we highlight the manifold inter- and intra-specific interactions linked to carrion via predation and parasitism risks, which may affect not only scavengers, but also non-scavengers. However, we identified major knowledge gaps, as reviewed articles were highly biased towards fear, terrestrial environments, vertebrates, and behavioral responses. Based on the reviewed literature, we provide a conceptual framework on the main fear- and disgust-based interaction pathways associated with carrion resources. This framework may be used to formulate predictions about how the landscape of fear and disgust around carcasses might influence animals’ individual behavior and ecological processes, from population to ecosystem functioning. We encourage ecologists, evolutionary biologists, epidemiologists, forensic scientists, and conservation biologists to explore the promising research avenues associated with the scary and disgusting facets of carrion. Acknowledging the multiple trophic and non-trophic interactions among dead and live animals, including both herbivores and carnivores, will notably improve our understanding of the overlapping pressures that shape the landscape of fear and disgust. Full article

This review addresses the state of the art of the systematics and the improvements in the biology, ecology and species diversity of the two annelid taxa Parergodrilidae and Orbiniidae, the early branching group of Orbiniida sensu Struck et al., 2015 according to molecular studies. An effort to identify gaps of knowledge is given to understand the distribution, dispersal and the diversity Parergodrilidae and Orbiniidae hold, as well as to give several directions for future research. Parergodrilidae is a taxon of interstitial annelids constituted by the terrestrial Parergodrilus heideri (monotypic genus up to date), reported throughout Europe but also in Korea and North America, and the genus Stygocapitella, which includes eleven species from the upper shore of sandy beaches distributed along Europe and other regions of the world. Orbiniidae contains more than 200 described species spread over 20 valid genera, varying in size from a few millimeters up to 30 cm, distributed globally and living in a wide variety of soft bottoms. Improving the knowledge on these two sister-taxa is crucial for the understanding of the evolution to interstitial forms by progenesis in Annelida. Full article

Extreme environmental features can drive the evolution of extreme phenotypes. Over the course of evolution, certain environmental changes may be so drastic that they lead to extinction. Conversely, if an organism adapts to harsh environmental changes, the adaptations may permit expansion of a novel niche. The interaction between environmental stressors and adaptive changes is well-illustrated by the blind Mexican cavefish, Astyanaxmexicanus, which has recurrently adapted to the stark subterranean environment. The transition from terrestrial rivers and streams (occupied by extant surface morphs of the same species) to the cave has been accompanied by the resorption of eyes, diminished pigmentation and reduced metabolism in cave-dwelling morphs. The principal features of caves most often associated with evolution of these common cave features are the absence of light and limited nutrition. However, a putatively essential cave feature that has received less attention is the frequently low concentration of oxygen within natural karst environments. Here, we review the potential role of limited oxygen as a critical environmental feature of caves in the Sierra de El Abra. Additionally, we review evidence that Astyanax cavefish may have evolved adaptive features enabling them to thrive in lower oxygen compared to their surface-dwelling counterparts. Full article

We located rural communities with pet parrots and used these locations to predict the probability of illegal parrot ownership across coastal Ecuador, using variables related to demand for pets, parrot availability, and trapping accessibility. In 12 pet keeping communities, we carried out in-depth interviews with 106 people, to quantify ownership, trapping, and interviewees’ attitudes towards these behaviours. We combined these data to calculate a trapping pressure index for four key roosting, feeding and nesting sites for the Critically Endangered Lilacine or Ecuadorian Amazon Parrot Amazona lilacina. We found that 66% of all communities had pet parrots and 31% had pet Lilacines. Our predictive models showed that pet parrot ownership occurs throughout coastal Ecuador, but ownership of Lilacines by rural communities, is more likely to occur within the natural distribution of the species. The number of people per community who had owned Lilacines in the last three years varied from 0–50%, as did the number of people who had trapped them—from 0–26%. We interviewed 10 people who had captured the species in the last three years who reported motives of either to sell or keep birds as pets. Attitudes towards pet keeping and trapping differed among the 12 communities: 20–52% believed it was acceptable to keep pet parrots, and for 32–74%, it was acceptable to catch parrots to sell. This being said, most people believed that wild parrots were important for nature and that local people had a responsibility to protect them. We conclude that trapping pressure is greatest in the southern part of the Lilacine’s range, and urgent conservation measures such as nest and roost protection, and local community engagement are needed. Full article

Changes in the structure of ground beetle communities indicate environmental stability or instability influenced by, e.g., urbanization, agriculture, and forestry. It can affect flight capability and ellipsoid biovolume (EV) of ground beetles. Therefore, we analyzed ground beetles in various habitats. In the course of the period from 2015 to 2017, we recorded in pitfall traps 2379 individuals (1030 males and 1349 females) belonging to 52 species at six localities (two rural, two suburban, two urban). We observed the decrease in the average EV value and morphometric characters (length, height, and width of the body) of ground beetles in the direction of the rural–suburban–urban gradient. Our results also suggest a decrease in EV of apterous and brachypterous species and an increase in macropterous species in the urban and suburban landscapes near agricultural fields. The increasing EV of apterous and brachypterous species and the decreasing of macropterous species was observed in rural landscape conditions with not continuous cover forestry and partial forest management. The creation of habitat fragments in urbanized conditions is key to maintaining the average EV in apterous and brachypterous species in urban and suburban landscapes. Full article

Wolbachia bacteria are widely distributed across invertebrate taxa, including ants, but several aspects of this host-associated interaction are still poorly explored, especially with regard to the ancestral state association, origin, and dispersion patterns of this bacterium. Therefore, in this study, we explored the association of Wolbachia with Formicidae in an evolutionary context. Our data suggest that supergroup F is the ancestral character state for Wolbachia infection in ants, and there is only one transition to supergroup A, and once ants acquired infection with supergroup A, there have been no other strains introduced. Our data also reveal that the origin of Wolbachia in ants likely originated in Asia and spread to the Americas, and then back to Asia. Understanding the processes and mechanisms of dispersion of these bacteria in Formicidae is a crucial step to advance the knowledge of this symbiosis and their implications in an evolutionary context. Full article

Predation is ubiquitous in nature and can be an important component of both ecological and evolutionary interactions. One of the most striking features of predators is how often they cause evolutionary diversification in natural systems. Here, we review several ways that this can occur, exploring empirical evidence and suggesting promising areas for future work. We also introduce several papers recently accepted in Diversity that demonstrate just how important and varied predation can be as an agent of natural selection. We conclude that there is still much to be done in this field, especially in areas where multiple predator species prey upon common prey, in certain taxonomic groups where we still know very little, and in an overall effort to actually quantify mortality rates and the strength of natural selection in the wild. Full article

Parrotfish provide important ecological functions on coral reefs, including the provision of new settlement space through grazing and the generation of sediment through bioerosion of reef substrate. Estimating these functions at an ecosystem level depends on accurately quantifying the functional impact of individuals, yet parrotfish feeding metrics are only available for a limited range of sites, species and size classes. We quantified bite rates, proportion of bites leaving scars and scar sizes in situ for the dominant excavator (Cetoscarus ocellatus, Chlorurus strongylocephalus, Ch. sordidus) and scraper species (Scarus rubroviolaceus, S. frenatus, S. niger, S. tricolor, S. scaber, S. psittacus) in the central Indian Ocean. This includes the first record of scar frequencies and sizes for the latter three species. Bite rates varied with species and life phase and decreased with body size. The proportion of bites leaving scars and scar sizes differed among species and increased with body size. Species-level allometric relationships between body size and each of these feeding metrics were used to parameterize annual individual grazing and bioerosion rates which increase non-linearly with body size. Large individuals of C. ocellatus, Ch. strongylocephalus and S. rubroviolaceus can graze 200–400 m² and erode >500 kg of reef substrate annually. Smaller species graze 1–100 m² yr⁻¹ and erode 0.2–30 kg yr⁻¹. We used these individual functional rates to quantify community grazing and bioerosion levels at 15 sites across the Maldives and the Chagos Archipelago. Although parrotfish density was 2.6 times higher on Maldivian reefs, average grazing (3.9 ± 1.4 m² m⁻² reef yr⁻¹) and bioerosion levels (3.1 ± 1.2 kg m⁻² reef yr⁻¹) were about 15% lower than in the Chagos Archipelago (4.5 ± 2.3 and 3.7 ± 3.0, respectively), due to the dominance of small species and individuals in the Maldives (90% <30 cm length). This demonstrates that large-bodied species and individuals contribute disproportionally to both grazing and bioerosion. Across all sites, grazing increased by 66 ± 5 m² ha⁻¹ and bioerosion by 109 ± 9 kg ha⁻¹ for every kg increase in parrotfish biomass. However, for a given level of parrotfish biomass, grazing and bioerosion levels were higher on Maldivian reefs than in the Chagos Archipelago. This suggests that small-bodied fish assemblages can maintain ecosystem functions, but only if key species are present in sufficiently high numbers. Full article

Several large carnivore populations are recovering former ranges, and it is important to understand interspecific interactions between overlapping species. In Scandinavia, recent research has reported that brown bear presence influences gray wolf habitat selection and kill rates. Here, we characterized the temporal use of a common prey resource by sympatric wolves and bears and described individual and seasonal variation in their direct and/or indirect interactions. Most bear–wolf interactions were indirect, via bear scavenging of wolf kills. Bears used >50% of wolf kills, whereas we did not record any wolf visit at bear kills. Adult and subadult bears visited wolf kills, but female bears with cubs of the year, the most vulnerable age class to conspecifics and other predators, did not. Wolf and bear kill rates peaked in early summer, when both targeted neonate moose calves, which coincided with a reduction in bear scavenging rate. Some bears were highly predatory and some did not kill any calf. Individual and age-class variation (in bear predation and scavenging patterns) and seasonality (in bear scavenging patterns and main prey availability of both wolves and bears) could mediate coexistence of these apex predators. Similar processes likely occur in other ecosystems with varying carnivore assemblages. Full article

The Viola epipsila-V. palustris complex is a highly taxonomically complicated group of species in its entire circumboreal range of distribution. Habitat loss, forest flooding, and hybridization could lead to the extinction of V. epipsila. A hybrid index and principal component analysis (PCA) were used to select qualitative and quantitative morphological features to distinguish parent species and hybrids, inter simple sequence repeat (ISSR) markers to determine the genetic diversity of the populations, flow cytometry to estimate the genome size (GS), and non-coding chloroplast DNA (cpDNA) regions to indicate the directions of crosses. All taxa are very morphologically variable, and their features can change within a season. The most stable feature is the distance of the bracts on the pedicel from the rhizome. The genetic diversity of all taxa populations is low and highly influenced by selfing and vegetative propagation. The population structure is differentiated: populations of V. epipsila or V. palustris, mixed populations with both parent species, F1 hybrids and populations with introgressive forms occur in different regions. The interspecific GS variation corresponds to the ploidy level (4x = 2.52 pg, 8x = 4.26 pg, 6x = 3.42 pg). Viola epipsila is the mother plant of the hybrids. Research has shown the risk of V. epipsila extinction in Central Europe and the importance of local populations in studying the role of hybridization in reducing/maintaining/increasing biodiversity. Full article

Forest edges are formed by natural or anthropogenic processes and their maintaining processes cause fundamentally different edge responses. We evaluated the published evidence on the effect of various edges on the abundance of ground beetles of different habitat affinity and dispersal power. Our results, based on 23 publications and 86 species, showed that natural forest edges were impenetrable for open-habitat species with high dispersal power, preventing their influx into the forest interiors, while forest specialist species of limited dispersal power penetrated and reached abundances comparable to those in forest interiors. Anthropogenic edges, maintained by continued disturbance were permeable by macropterous open-habitat species, allowing them to invade the forest interiors, while such edges (except the forestry-induced ones) deterred brachypterous forest specialists. Different permeability of forest edges with various maintaining processes can affect ecosystem functions and services, therefore the preservation and restoration of natural forest edges are key issues in both forest ecology and nature conservation. Full article

Seagrass meadows are an important habitat for a variety of animals, including ecologically and socioeconomically important species. Seagrass meadows are recognised as providing species with nursery grounds, and as a migratory pathway to adjacent habitats. Despite their recognised importance, little is known about the species assemblages that occupy seagrass meadows of different depths in the coastal zone. Understanding differences in the distribution of species in seagrass at different depths, and differences in species diversity, abundance, biomass, and size spectra, is important to fully appreciate both the ecological significance and economic importance of these seagrass meadows. Here, we assess differences in the assemblage characteristics of fish, crustacea, and cephalopods (collectively, nekton) between deep (>9 m; Halophila spinulosa dominant) and shallow water (<2 m; Halodule uninervis and/or Zostera muelleri dominant) seagrass meadows of the central Great Barrier Reef coast of Queensland, Australia. Nekton assemblage structure differed between deep and shallow seagrass. Deeper meadows were typified by juvenile emperors (e.g., Lethrinus genivittatus), hairfinned leatherjacket (Paramonacanthus japonicus) and rabbitfish (e.g., Siganus fuscescens) in both biomass per unit effort (BPUE) and catch per unit effort (CPUE), whereas shallow meadows were typified by the green tiger prawn (Penaeus semisulcatus) and pugnose ponyfish (Secutor insidiator) in both BPUE and CPUE. Both meadow depths were distinct in their nekton assemblage, particularly for socioeconomically important species, with 11 species unique to both shallow and deep meadows. However, both meadow depths also included juveniles of socioeconomically important species found in adjacent habitats as adults. The total nekton CPUE was not different between deep and shallow seagrass, but the BPUE and body mass of individual animals were greater in deep than shallow seagrass. Size spectra analysis indicated that in both deep and shallow meadows, smaller animals predominated, even more so than theoretically expected for size spectra. Our findings highlight the unique attributes of both shallow and deeper water seagrass meadows, and identify the distinct and critically important role of deep seagrass meadows within the Great Barrier Reef World Heritage Area (GBRWHA) as a habitat for small and juvenile species, including those of local fisheries value. Full article

The Pseudomonas genus includes many species living in diverse environments and hosts. It is important to understand which are the major evolutionary groups and what are the genomic/proteomic components they have in common or are unique. Towards this goal, we analyzed 494 complete Pseudomonas proteomes and identified 297 core-orthologues. The subsequent phylogenomic analysis revealed two well-defined species (Pseudomonas aeruginosa and Pseudomonas chlororaphis) and four wider phylogenetic groups (Pseudomonas fluorescens, Pseudomonas stutzeri, Pseudomonas syringae, Pseudomonas putida) with a sufficient number of proteomes. As expected, the genus-level core proteome was highly enriched for proteins involved in metabolism, translation, and transcription. In addition, between 39–70% of the core proteins in each group had a significant presence in each of all the other groups. Group-specific core proteins were also identified, with P. aeruginosa having the highest number of these and P. fluorescens having none. We identified several P. aeruginosa-specific core proteins (such as CntL, CntM, PlcB, Acp1, MucE, SrfA, Tse1, Tsi2, Tse3, and EsrC) that are known to play an important role in its pathogenicity. Finally, a holin family bacteriocin and a mitomycin-like biosynthetic protein were found to be core-specific for P. cholororaphis and we hypothesize that these proteins may confer a competitive advantage against other root-colonizers. Full article

Phylogenetic relatedness is a key diversity measure for the analysis and understanding of how species and communities evolve across time and space. Understanding the nonrandom loss of species with respect to phylogeny is also essential for better-informed conservation decisions. However, several factors are known to influence phylogenetic reconstruction and, ultimately, phylogenetic diversity metrics. In this study, we empirically tested how some of these factors (topological constraint, taxon sampling, genetic markers and calibration) affect phylogenetic resolution and uncertainty. We built a densely sampled, species-level phylogenetic tree for spiders, combining Sanger sequencing of species from local communities of two biogeographical regions (Iberian Peninsula and Macaronesia) with a taxon-rich backbone matrix of Genbank sequences and a topological constraint derived from recent phylogenomic studies. The resulting tree constitutes the most complete spider phylogeny to date, both in terms of terminals and background information, and may serve as a standard reference for the analysis of phylogenetic diversity patterns at the community level. We then used this tree to investigate how partial data affect phylogenetic reconstruction, phylogenetic diversity estimates and their rankings, and, ultimately, the ecological processes inferred for each community. We found that the incorporation of a single slowly evolving marker (28S) to the DNA barcode sequences from local communities, had the highest impact on tree topology, closely followed by the use of a backbone matrix. The increase in missing data resulting from combining partial sequences from local communities only had a moderate impact on the resulting trees, similar to the difference observed when using topological constraints. Our study further revealed substantial differences in both the phylogenetic structure and diversity rankings of the analyzed communities estimated from the different phylogenetic treatments, especially when using non-ultrametric trees (phylograms) instead of time-stamped trees (chronograms). Finally, we provide some recommendations on reconstructing phylogenetic trees to infer phylogenetic diversity within ecological studies. Full article

Climate change poses a great challenge for biodiversity conservation. Several studies exist regarding climate change’s impacts on European plants, yet none has investigated how climate change will affect the extinction risk of the entire endemic flora of an island biodiversity hotspot, with intense human disturbance. Our aim is to assess climate change’s impacts on the biodiversity patterns of the endemic plants of Crete (S Aegean) and provide a case-study upon which a climate-smart conservation planning strategy might be set. We employed a variety of macroecological analyses and estimated the current and future biodiversity, conservation and extinction hotspots in Crete. We evaluated the effectiveness of climatic refugia and the Natura 2000 network of protected areas (PAs) for protecting the most vulnerable species and identified the taxa of conservation priority based on the Evolutionary Distinct and Globally Endangered (EDGE) index. The results revealed that high altitude areas of Cretan mountains constitute biodiversity hotspots and areas of high conservation and evolutionary value. Due to the “escalator to extinction” phenomenon, these areas are projected to become diversity “death-zones” and should thus be prioritised. Conservation efforts should be targeted at areas with overlaps among PAs and climatic refugia, characterised by high diversity and EDGE scores. This conservation-prioritisation planning will allow the preservation of evolutionary heritage, trait diversity and future ecosystem services for human well-being and acts as a pilot for similar regions worldwide. Full article

The diversity of nematodes infecting amphibians is understudied in tropical Africa and unknown in Rwanda. Diversity assessment is hampered by the fact that species descriptions refer mostly to morphological features that are unlinked to DNA sequences of marker genes available in public databases. In this paper, we explore the abundance and diversity of parasitic nematodes in reed frogs Hyperolius kivuensis (n = 115), H. parallelus (n = 45) and H. viridiflavus (n = 100) collected in Rwanda. Five nematode species were identified morphologically as Orneoascaris chrysanthemoides, O. schoutedeni, Gendria leberrei, Aplectana chamaeleonis and Rhabdias collaris. Corresponding DNA sequences of 18S and COI genes were determined and subsequently deposited in GenBank. Aplectana chamaeleonis showed the highest prevalence (8.7%), but O. chrysanthemoides the highest mean intensity of infection (6.0) and largest number (24) of individuals in H. kivuensis. To the best of our knowledge, all amphibian hosts are new records for these nematode species, which are known to infect a wide range of amphibian and reptile species. Our findings suggest that nematode diversity is probably lower than previously assumed due to low host specificity. As morphological species identification is often challenging, our data facilitate molecular identification of adult and specifically larval nematodes found in amphibians of Sub-Saharan Africa. Full article

Paramecium bursaria is a single-celled model organism for studying endosymbiosis among ciliates and green algae. Most strains of P. bursaria bear either Chlorella variabilis or Micractinium conductrix as endosymbionts. Both algal genera are unicellular green algae characterized by cup-shaped chloroplasts containing a single pyrenoid and reproduction by autospores. Due to their size and only few morphological characteristics, these green algae are very difficult to discriminate by microscopy only. Their cultivation is laborious and often unsuccessful, but we developed a three-step isolation method, which provided axenic cultures of endosymbionts. In addition to the time-consuming isolation, we developed a simple diagnostic PCR identification method using specific primers for C. variabilis and M. conductrix that provided reliable results. One advantage of this approach was that the algae do not have to be isolated from their host. For a comparative study, we investigated 19 strains of P. bursaria from all over the world (new isolates and available laboratory strains) belonging to the five known syngens (R1–R5). Six European ciliate strains belonging to syngens R1 and R2 bore M. conductrix as endosymbiont whereas C. variabilis was discovered in syngens R1–R5 having worldwide origins. Our results reveal the first evidence of C. variabilis as endosymbiont in P. bursaria in Europe. Full article

Bats are killed at wind energy facilities worldwide and we must improve our understanding of why this is happening and implement effective strategies to minimize impacts. To this end, we need accurate assessments of which individuals from which bat species are being killed at individual wind projects and at regional and range-wide scales. Traditional fatality searches have relied on physical characteristics to ascertain species and sex of bat carcasses collected at wind turbines; however, the resulting data can be incomplete and inaccurate. In contrast, the use of readily available and low-cost molecular methods improves both the quality and quantity of available data. We applied such methods to a bat fatality dataset (n = 439 bats) from far-south Texas, USA. Using DNA barcoding, we increased accurate species identification from 83% to 97%, and discovered the presence of 2 bat species outside of their known geographic ranges. Using a PCR-based approach to determine sex, the number of carcasses with correct sex assignment increased from 35% to 94%, and we documented a female-biased sex ratio for all species combined and for Dasypterus ega. We recommend that molecular methods be used during future survey efforts to accurately assess the impacts of wind energy on bats. Full article

African rainforests (ARFs) are species rich and occur in two main rainforest blocks: West/Central and East Africa. This diversity is suggested to be the result of recent diversification, high extinction rates and multiple vicariance events between west/central and East African forests. We reconstructed the diversification history of two subtribes (Annickieae and Piptostigmateae) from the ecologically dominant and diverse tropical rainforest plant family Annonaceae. Both tribes contain endemic taxa in the rainforests of West/Central and East Africa. Using a dated molecular phylogeny based on 32 nuclear markers, we estimated the timing of the origin of East African species. We then undertook several diversification analyses focusing on Piptostigmateae to infer variation in speciation and extinction rates, and test the impact of extinction events. Speciation in both tribes dated to the Pliocene and Pleistocene. In particular, Piptostigma (13 species) diversified mainly during the Pleistocene, representing one of the few examples of Pleistocene speciation in an African tree genus. Our results also provide evidence of an ARF fragmentation at the mid-Miocene linked to climatic changes across the region. Overall, our results suggest that continental-wide forest fragmentation during the Neogene (23.03–2.58 Myr), and potentially during the Pliocene, led to one or possibly two vicariance events within the ARF clade Piptostigmateae, in line with other studies. Among those tested, the best fitting diversification model was the one with an exponential speciation rate and no extinction. We did not detect any evidence of mass extinction events. This study gives weight to the idea that the ARF might not have been so negatively impacted by extinction during the Neogene, and that speciation mainly took place during the Pliocene and Pleistocene. Full article

Rusty blackbird (Euphagus carolinus) populations have declined dramatically since the 1970s and the cause of decline is still unclear. As is the case for many passerines, most research on rusty blackbirds occurs during the nesting period. Nest success is relatively high in most of the rusty blackbird’s range, but survival during the post-fledging period, when fledgling songbirds are particularly vulnerable, has not been studied. We assessed fledgling and adult survivorship and nest success in northern New Hampshire from May to August in 2010 to 2012. We also assessed fledgling and adult post-fledging habitat selection and nest-site selection. The likelihood of rusty blackbirds nesting in a given area increased with an increasing proportion of softwood/mixed-wood sapling stands and decreasing distances to first to sixth order streams. Wetlands were not selected for nest sites, but both adults and fledglings selected wetlands for post-fledging habitat. Fledglings and adults selected similar habitat post-fledging, but fledglings were much more likely to be found in habitat with an increasing proportion of softwood/mixed-wood sapling stands and were more likely to be closer to streams than adults. No habitat variables selected during nesting or post-fledging influenced daily survival rates, which were relatively low for adults over the 60-day study periods (males 0.996, females 0.998). Fledgling survival rates (0.89) were much higher than reported for species of similar size. Full article

Geological processes can strongly affect the distribution and diversification of freshwater-limited species. In particular, a combination of geological and biological data has suggested that Earth history processes can drive vicariant isolation and speciation in non-migratory freshwater fishes. Here, we synthesise recently published geological and freshwater phylogeographic data to illustrate that changes in river drainage geometry are important drivers of galaxiid diversification, both in New Zealand and elsewhere. Major river capture events have led to the isolation and divergence of unique and geographically-restricted lineages, including taxa that are now of prime conservation concern. The parallel phylogeographic effects of drainage shifts have been verified by observations of concordant patterns in co-distributed species. Broadly, this study highlights the dynamic interplay between physical and biological processes in geologically active settings. Full article

Endosymbiosis between coccoid green algae and ciliates are widely distributed and occur in various phylogenetic lineages among the Ciliophora. Most mixotrophic ciliates live in symbiosis with different species and genera of the so-called Chlorella clade (Trebouxiophyceae). The mixotrophic ciliates can be differentiated into two groups: (i) obligate, which always live in symbiosis with such green algae and are rarely algae-free and (ii) facultative, which formed under certain circumstances such as in anoxic environments an association with algae. A case of the facultative endosymbiosis is found in the recently described species of Tetrahymena, T. utriculariae, which lives in the bladder traps of the carnivorous aquatic plant Utricularia reflexa. The green endosymbiont of this ciliate belonged to the genus Micractinium. We characterized the isolated algal strain using an integrative approach and compared it to all described species of this genus. The phylogenetic analyses using complex evolutionary secondary structure-based models revealed that this endosymbiont represents a new species of Micractinium, M. tetrahymenae sp. nov., which was further confirmed by the ITS2/CBC approach. Full article

While over hundreds of terrestrial fungal genera have been shown to play important roles in the biodegradation of hydrocarbons, few studies have so far focused on the fungal bioremediation potential of petroleum in the marine environment. In this study, the culturable fungal communities occurring in the port of Oran in Algeria, considered here as a chronically-contaminated site, have been mainly analyzed in terms of species richness. A collection of 84 filamentous fungi has been established from seawater samples and then the fungi were screened for their ability to utilize and degrade crude oil. A total of 12 isolates were able to utilize crude oil as a unique carbon source, from which 4 were defined as the most promising biodegrading isolates based on a screening test using 2,6-dichlorophenol indophenol as a proxy to highlight their ability to metabolize crude oil. The biosurfactant production capability was also tested and, interestingly, the oil spreading and drop-collapse tests highlighted that the 4 most promising isolates were also those able to produce the highest quantity of biosurfactants. The results generated in this study demonstrate that the most promising fungal isolates, namely Penicillium polonicum AMF16, P. chrysogenum AMF47 and 2 isolates (AMF40 and AMF74) affiliated to P. cyclopium, appear to be interesting candidates for bioremediation of crude oil pollution in the marine environment within the frame of bioaugmentation or biostimulation processes. Full article

Island invasions may cause severe changes in biodiversity, but the factors that influence these changes are not well understood. We established 120 plots in Cycas micronesica habitats throughout Guam in 2005 following the invasion of the armored scale Aulacaspis yasumatsui, then observed plant mortality through 2020. We used transects in Yap as benchmarks, as the Yap C. micronesica population is not threatened. The initial Guam plots contained about 1600 seedlings, 1160 juveniles, and 1240 mature plants per ha. Seedling mortality was 100% by 2006, juvenile mortality was 100% by 2014, and the 2020 census revealed 96% mortality of the plant population. Localities in western Guam and isolated forest fragments exhibited the greatest mortality, with 100% extirpation from two fragmented western localities. The juvenile and mature trees in Yap were unchanged from 2010 to 2018, but the seedling count was heterogeneous among the years. Constrained recruitment from seedlings to juveniles explained these dynamics. Yap transects contained about 6120 seedlings, 3400 juveniles, and 1250 mature plants per ha. Biological control of the invasive insects remains the acute conservation action needed for the Guam population. Lessons learned may be useful in other regions where invasions of non-native pests threaten biodiversity. Full article

The psittacine beak and feather disease (PBFD) is a globally widespread infectious bird disease that mainly affects species within the Order Psittaciformes (parrots and allies). The disease is caused by an avian circovirus (the beak and feather disease virus, BFDV), which is highly infectious and can lead to severe consequences in wild and captive populations during an outbreak. Both legal and illegal trading have spread the BFDV around the world, although little is known about its prevalence in invasive parrot populations. Here, we analyze the BFDV prevalence in sympatric invasive populations of rose-ringed (Psittacula krameri) and monk parakeets (Myiopsitta monachus) in Southern Spain. We PCR-screened 110 blood samples (55 individuals from each species) for BFDV and characterized the genotypes of five positives from each species. About 33% of rose-ringed parakeets and 37% of monk parakeets sampled were positive for BFDV, while neither species showed disease symptoms. The circovirus identified is a novel BFDV genotype common to both species, similar to the BFDV genotypes detected in several parrot species kept in captivity in Saudi Arabia, South Africa and China. Our data evidences the importance of an accurate evaluation of avian diseases in wild populations, since invasive parrots may be bringing BFDV without showing any visually detectable clinical sign. Further research on the BFDV prevalence and transmission (individual–individual, captive–wild and wild–captive) in different bird orders and countries is crucial to understand the dynamics of the viral infection and minimize its impact in captive and wild populations. Full article

In benthic ecosystems, organic matter (OM), prokaryotes, and meiofauna represent a functional bottleneck in the energy transfer towards higher trophic levels and all respond to a variety of natural and anthropogenic disturbances. The relationships between OM and the different components of benthic communities are influenced by multiple environmental variables, which can vary across different habitats. However, analyses of these relationships have mostly been conducted by considering the different habitats separately, even though freshwater, transitional, and marine ecosystems, physically linked to each other, are not worlds apart. Here, we investigated the quantity and nutritional quality of sedimentary OM, along with the prokaryotic and meiofauna abundance, biomass, and biodiversity, in two sampling periods, corresponding to high vs. low freshwater inputs to the sea, along a river-to-sea transect. The highest values of sedimentary organic loads and their nutritional quality, prokaryotic and meiofaunal abundance, and biomass were consistently observed in lagoon systems. Differences in the prokaryotic Operational Taxonomic Units (OTUs) and meiofaunal taxonomic composition, rather than changes in the richness of taxa, were observed among the three habitats and, in each habitat, between sampling periods. Such differences were driven by either physical or trophic variables, though with differences between seasons. Overall, our results indicate that the apparent positive relationship between sedimentary OM, prokaryote and meiofaunal abundance, and biomass across the river-lagoon-sea transect under scrutiny is more the result of a pattern of specifically adapted prokaryotic and meiofaunal communities to different habitats, rather than an actually positive ‘response’ to OM enrichment. We conclude that the synoptic analysis of prokaryotes and meiofauna can provide useful information on the relative effect of organic enrichment and environmental settings across gradients of environmental continuums, including rivers, lagoons, and marine coastal ecosystems. Full article

The influence of contrasting lentic and lotic hydrological environments on the morphology of members of the Galaxias vulgaris species complex was examined. Morphological variation between habitat types was investigated by comparison of populations of Galaxias brevipinnis (inferred ancestor), Galaxias gollumoides (roundhead morphotype) and Galaxias vulgaris (flathead morphotype). Interspecific convergence and intraspecific divergence of morphological characters were demonstrated, representing general shifts in morphology towards a common functional form in particular hydrological environments. In all species, more lentic Galaxias had longer bodies; shorter, more stout caudal peduncles; longer, narrower pectoral fins; and longer, wider heads with larger mouths. In comparison, lotic Galaxias had relatively shorter bodies; more slender caudal peduncles; broader pectoral fins; and shorter flatter heads, with smaller mouths. This study suggests that the hydrological environment of a habitat is an important factor moulding and maintaining an individual fish’s morphology to a particular habitat type, most likely representing a phenotypic plastic response. Full article

The Orchidaceae family is a diverse family of flowering plants that occur naturally in most parts of the world. However, fungal communities inhabiting different parts of orchids are not sufficiently described. The aim of the study was to conduct a mycological evaluation of Epipactis helleborine and E. purpurata (Orchidaceae), which grow naturally in Lower Silesia (SW Poland), by identifying the species composition of the culturable micromycetes fungi on the surfaces of the plants and from the inner layers of the tissues. Fungi were identified based on a phenotypic and genotypic analysis. To our knowledge, this is the first such analysis. This study showed that more species of micromycetes were cultured from E. helleborine compared with E. purpurata. The flowering plants of E. helleborine were inhabited by the largest number of culturable fungal species (13 species), and the fewest species were isolated from the flowering plants of E. purpurata (eight species). Some of these fungal species may be pathogens of the plants. The surface tissues of the orchids were mainly inhabited by Mucor moelleri and/or Penicillium biourgeianum. The inner layers of these plants were the most colonized by Alternaria tenuissima and/or Arthrinium arundinis and/or Fusarium sporotrichioides. The relative dominance of these fungal species depended mainly on the development phase of the plants. Full article