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State-of-the-Art Molecular Genetics and Genomics in Poland: 3rd Edition
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State-of-the-Art Molecular Genetics and Genomics in Poland: 3rd Edition

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Genetics and Genomics".

Deadline for manuscript submissions: 30 November 2025 | Viewed by 1531

Special Issue Editors

Dr. Ewa Fiedorowicz

E-Mail Website
Guest Editor
Department of Biochemistry, Faculty of Biology and Biotechnology, University of Warmia and Mazury, Oczapowskiego 1A Street, 10-719 Olsztyn, Poland
Interests: molecular biology; biochemistry; food allergy; milk allergy; allergy; allergen; ELISA; serotonin; opioid peptides; cell culture; hypersensitivity; cytokines
Special Issues, Collections and Topics in MDPI journals
Dr. Anna Cieślińska

E-Mail Website
Guest Editor
Department of Biology and Biotechnology, University of Warmia and Mazury, 10-719 Olsztyn, Poland
Interests: proteins; opioids; nutrigenomics; polymorphism; SNPs; mutations; vitamins; markers
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

This is a continued series of the hot topic of State-of-the-Art Molecular Genetics and Genomics in Poland. We have already done 2 successful editions of this thematic issue that received interesting contributions and discussions.

This Special Issue aims to provide a comprehensive overview of recent advances in molecular genetics and genomes in Poland by inviting contributions from Polish research institutes/laboratories that consolidate our understanding of this area.

Research articles and reviews are sought that provide insight into any aspect of molecular genetics and genomes in Poland. Topics include but are not limited to:

  • Gene regulation, chromatin, and epigenetics;
  • Genome integrity, repair, and replication;
  • Genetic polymorphism;
  • Microbial genetics;
  • Plant genetic and genomic studies;
  • Sex differences;
  • Genes or genomes related to phenotypes and human physiopathology;
  • Cancer genetics and epigenetics;
  • Pharmacogenetics and pharmacogenomics;
  • Toxicogenomics, nutrigenomics and neurogenomics, etc.;
  • Technological and analytical developments of genomic data;
  • Functional genomics.

Dr. Ewa Fiedorowicz
Prof. Dr. Anna Cieślińska
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. International Journal of Molecular Sciences is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. There is an Article Processing Charge (APC) for publication in this open access journal. For details about the APC please see here. Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • RNA
  • DNA
  • DNA structure, damage, and repair
  • post-translational modifications
  • autophagy
  • cell cycle
  • gene expression, functions and therapy
  • mutation
  • nuclear organization
  • polymerase
  • nucleic acid–protein interactions
  • molecular clone
  • sequencing analysis
  • epigenetics
  • transcriptomics
  • genetics of aging
  • genetic disorders, SNP, etc

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Published Papers (2 papers)

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Research

14 pages, 1310 KB  
Article
Expected Mitochondrial Haplotype Richness in Remaining Populations of the Critically Endangered European Mink Mustela lutreola and Its Conservation Implications
by Jakub Skorupski, Przemysław Śmietana, Christian Seebass, Wolfgang Festl, Alexe Vasile, Natalia Kiseleva, Florian Brandes and Mihai Marinov
Int. J. Mol. Sci. 2025, 26(20), 9935; https://doi.org/10.3390/ijms26209935 - 12 Oct 2025
Viewed by 418
Abstract
The European mink Mustela lutreola is one of the most threatened carnivores in Europe, having suffered dramatic range contractions and severe population fragmentation. Accurate knowledge of its genetic diversity is crucial for conservation planning, yet earlier studies based on partial mitochondrial markers offered [...] Read more.
The European mink Mustela lutreola is one of the most threatened carnivores in Europe, having suffered dramatic range contractions and severe population fragmentation. Accurate knowledge of its genetic diversity is crucial for conservation planning, yet earlier studies based on partial mitochondrial markers offered limited resolution and often underestimated haplotype richness. In this study, complete mitochondrial genomes from four extant populations (Russia, n = 11; Romania, n = 16; Germany, n = 24; France–Spain, n = 15) were analysed using a suite of non-parametric and asymptotic estimators (Fisher’s α, ACE, Jackknife1, Bootstrap, Chao1-based iNEXT) together with negative binomial modelling. A total of 41 haplotypes were detected, but extrapolated estimates indicated substantially higher richness, particularly in populations dominated by singletons. Rarefaction and extrapolation analyses revealed that sample sizes of 70–130 individuals per population are needed to approach complete haplotype detection. The France–Spain and Romania populations harboured the highest predicted richness, whereas Germany and Russia, both represented by ex situ stocks, showed lower diversity. These results refine earlier assumptions of extreme homogeneity in the Western population and demonstrate that significant mitochondrial variation persists at the continental scale. The study provides quantitative benchmarks for sampling design and genetic management, supporting preservation of evolutionary potential in this critically endangered species. Full article
(This article belongs to the Special Issue State-of-the-Art Molecular Genetics and Genomics in Poland: 3rd Edition)
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28 pages, 5081 KB  
Article
Comprehensive Profiling of the miRNome and Degradome Reveals Regulatory Signatures of Seed Aging and Germination
by Marta Puchta-Jasińska, Paulina Bolc, Adrian Motor, Andreas Börner and Maja Boczkowska
Int. J. Mol. Sci. 2025, 26(19), 9292; https://doi.org/10.3390/ijms26199292 - 23 Sep 2025
Viewed by 483
Abstract
Small noncoding RNAs are recognized as crucial regulators of seed germination, but their role in seed aging remains unclear. To address this, we performed RNA sequencing (RNA-seq) on barley (Hordeum vulgare L.) seeds with varying viability levels after long-term storage in hermetically [...] Read more.
Small noncoding RNAs are recognized as crucial regulators of seed germination, but their role in seed aging remains unclear. To address this, we performed RNA sequencing (RNA-seq) on barley (Hordeum vulgare L.) seeds with varying viability levels after long-term storage in hermetically sealed containers since the 1972 harvest. This globally unique material, characterized by genetic homogeneity and contrasting germination capacities, enabled an in-depth analysis of microtranscriptomic changes during germination. We identified 62 known miRNAs from 11 families and 234 novel miRNAs, with miR159, miR168, and miR166 showing consistently high expression across all germination stages and viability groups. Differential expression analysis revealed 28 miRNAs whose abundance varied significantly with seed viability and germination phase. Functional predictions supported by quantitative reverse transcription PCR (qRT–PCR) and degradome-based target identification indicated that these miRNAs regulate key developmental and metabolic pathways. Several isomiRs exhibited sample-specific expression, suggesting the viability-dependent activation of distinct molecular mechanisms. Gene Ontology analysis highlighted processes related to nucleic acid binding, nuclear organization, and cytoplasmic metabolism as central during germination. We propose that miRNA profiles may reflect an “epigenetic inheritance”—a molecular memory of aging stored in seeds—rather than solely a response to current conditions. This concept may help explain aging-related phenotypes such as delayed germination and reduced vigor, warranting further investigation. Full article
(This article belongs to the Special Issue State-of-the-Art Molecular Genetics and Genomics in Poland: 3rd Edition)
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