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Protein on the Edge: Studying the Molecular Mechanisms That Control Protein-Membrane Interaction

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Biophysics".

Deadline for manuscript submissions: closed (30 September 2023) | Viewed by 1010

Special Issue Editors


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Guest Editor
Dipartimento di Medicina Sperimentale, Università di Roma Tor Vergata, Via Montpellier 1, 00133 Rome, Italy
Interests: protein folding; protein-membrane interaction; protein structure-to-function relationship; protein fluorescence
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Dipartimento di Medicina Sperimentale, Università di Roma Tor Vergata, Via Montpellier 1, 00133 Rome, Italy
Interests: biophysics
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Soluble proteins and cell membranes belong to opposite molecular worlds, characterized by complementary physical and chemical properties, that give rise to interesting phenomena when they come in contact. So far, several mechanisms of interaction have been recognized and characterized. The first one includes protein–receptor recognition, which actually is not a real protein–membrane interaction, but rather a protein–protein interaction. A second possibility is the presence of specific “anchorage” sites (such as lipid rafts and gangliosides to mention a few). Finally, some proteins may change their tridimensional conformation in the presence of membranes, exposing hydrophobic patches that can (partially) penetrate into the double layer. In all cases, these mutual interactions give rise to molecular processes in which the size, shape and curvature of the lipid layer also play a relevant mechanical role. Clarifying these mechanisms at the molecular level will provide new insights on the strategies that some soluble proteins adopt in crossing the hydrophobic bilayer, thus opening new perspectives to drug delivery methodologies. This Special Issue is focused on the characterization of the effects that protein binding has on model and biological membranes, as observed through the multi-disciplinary scientific approach offered by the available, modern complementary biophysical techniques, including classical biochemistry, molecular spectroscopy, imaging and atomic force microscopy.

Dr. Giampiero Mei
Dr. Almerinda Di Venere
Guest Editors

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Keywords

  • protein–membrane interaction
  • lipid raft
  • protein conformational change
  • membrane crossing

Published Papers (1 paper)

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Review

17 pages, 5675 KiB  
Review
Conformational Dynamics of Lipoxygenases and Their Interaction with Biological Membranes
by Fulvio Erba, Giampiero Mei, Velia Minicozzi, Annalaura Sabatucci, Almerinda Di Venere and Mauro Maccarrone
Int. J. Mol. Sci. 2024, 25(4), 2241; https://doi.org/10.3390/ijms25042241 - 13 Feb 2024
Cited by 1 | Viewed by 734
Abstract
Lipoxygenases (LOXs) are a family of enzymes that includes different fatty acid oxygenases with a common tridimensional structure. The main functions of LOXs are the production of signaling compounds and the structural modifications of biological membranes. These features of LOXs, their widespread presence [...] Read more.
Lipoxygenases (LOXs) are a family of enzymes that includes different fatty acid oxygenases with a common tridimensional structure. The main functions of LOXs are the production of signaling compounds and the structural modifications of biological membranes. These features of LOXs, their widespread presence in all living organisms, and their involvement in human diseases have attracted the attention of the scientific community over the last decades, leading to several studies mainly focused on understanding their catalytic mechanism and designing effective inhibitors. The aim of this review is to discuss the state-of-the-art of a different, much less explored aspect of LOXs, that is, their interaction with lipid bilayers. To this end, the general architecture of six relevant LOXs (namely human 5-, 12-, and 15-LOX, rabbit 12/15-LOX, coral 8-LOX, and soybean 15-LOX), with different specificity towards the fatty acid substrates, is analyzed through the available crystallographic models. Then, their putative interface with a model membrane is examined in the frame of the conformational flexibility of LOXs, that is due to their peculiar tertiary structure. Finally, the possible future developments that emerge from the available data are discussed. Full article
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