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Novel Mediators in NF-κB Activation

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Genetics and Genomics".

Deadline for manuscript submissions: closed (20 January 2023) | Viewed by 11176

Special Issue Editor


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Guest Editor
Institute of Genetics and Biophysics Adriano Buzzati Traverso, Naples, Italy
Interests: NEMO/IKKgamma; IKK complex; NF-κB signaling; NF-κB mutation in rare inflammatory disease; mechanism regulating programmed cell death; TNF signaling; genetic basis of rare immunological/autoimmune disease

Special Issue Information

Dear Colleagues,

In mammals, the canonical NF-κB is activated by a diversity of external stimuli, transducing a rapid but transient transcriptional activity to regulate the expression of various genes involved in immune response, cell proliferation, differentiation and inflammation. NF-κB is a collective name for an evolutionarily conserved family of five different transcription factors (p65, RelB, c-Rel, p50 and p52) that can form homodimers or heterodimers to reprogram gene expression. The five members of the NF-κB family are typically sequestered in the cytosol in inactive complexes with the inhibitory IκB proteins. The activation of the canonical NF-κB is triggered by phosphorylation-dependent activation of the IKK complex composed of IKKα/β kinases and NEMO, which function as a regulatory component that mediates the recruitment of the IKK complex to receptor. This event enables IκBs phosphorylation, proteasomal degradation, translocation of NF-κB to the nucleus and activation of target genes.

Most NF-κB components undergo several post-translational modifications that regulate their function. Moreover, while the upstream cytoplasmic regulatory events for the activation of NF-κB are well known, less is known about the nuclear regulation of NF-κB. Emerging evidence suggests novel actors also regulate NF-κB signaling in cellular organelles (such as mitochondria and peroxisomes).

NF-κB is better known for its pro-survival role, and in fact it has become increasingly clear that the alteration of NF-κB determines a pathological outcome due to uncontrolled programmed cell death induced by pro-inflammatory cytokines such as TNF-α, IL-1, and LPS. Regulators of the NF-κB cascade can act by both directly modulating upstream components of the cell death machinery or downstream by inducing pro-survival gene expression.

Authors are welcome to contribute original research articles, current review articles, and commentaries, focusing on novel mediators or on novel roles of known components of the NF-κB pathway, the post-translational modifications that regulate their activity and their influence on transcriptional output and in life/death decisions of the cell.

Prof. Dr. Matilde Valeria Ursini
Guest Editor

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Keywords

  • NF-κB signaling
  • NEMO (NF-κB Essential MOdulator)
  • NF-κB mutations in inflammatory human diseases
  • programmed cell death machinery
  • post-translational modification of NF-κB components
  • IKK complex regulation

Published Papers (4 papers)

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Research

26 pages, 4422 KiB  
Article
A Data-Mining Approach to Identify NF-kB-Responsive microRNAs in Tissues Involved in Inflammatory Processes: Potential Relevance in Age-Related Diseases
by Luigina Micolucci, Giulia Matacchione, Maria Cristina Albertini, Massimo Marra, Deborah Ramini, Angelica Giuliani, Jacopo Sabbatinelli, Antonio Domenico Procopio, Fabiola Olivieri, Annalisa Marsico and Vladia Monsurrò
Int. J. Mol. Sci. 2023, 24(6), 5123; https://doi.org/10.3390/ijms24065123 - 7 Mar 2023
Cited by 3 | Viewed by 1947
Abstract
The nuclear factor NF-kB is the master transcription factor in the inflammatory process by modulating the expression of pro-inflammatory genes. However, an additional level of complexity is the ability to promote the transcriptional activation of post-transcriptional modulators of gene expression as non-coding RNA [...] Read more.
The nuclear factor NF-kB is the master transcription factor in the inflammatory process by modulating the expression of pro-inflammatory genes. However, an additional level of complexity is the ability to promote the transcriptional activation of post-transcriptional modulators of gene expression as non-coding RNA (i.e., miRNAs). While NF-kB’s role in inflammation-associated gene expression has been extensively investigated, the interplay between NF-kB and genes coding for miRNAs still deserves investigation. To identify miRNAs with potential NF-kB binding sites in their transcription start site, we predicted miRNA promoters by an in silico analysis using the PROmiRNA software, which allowed us to score the genomic region’s propensity to be miRNA cis-regulatory elements. A list of 722 human miRNAs was generated, of which 399 were expressed in at least one tissue involved in the inflammatory processes. The selection of “high-confidence” hairpins in miRbase identified 68 mature miRNAs, most of them previously identified as inflammamiRs. The identification of targeted pathways/diseases highlighted their involvement in the most common age-related diseases. Overall, our results reinforce the hypothesis that persistent activation of NF-kB could unbalance the transcription of specific inflammamiRNAs. The identification of such miRNAs could be of diagnostic/prognostic/therapeutic relevance for the most common inflammatory-related and age-related diseases. Full article
(This article belongs to the Special Issue Novel Mediators in NF-κB Activation)
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21 pages, 11062 KiB  
Article
Red Algae “Sarcodia suieae” Acetyl-Xylogalactan Downregulate Heat-Induced Macrophage Stress Factors Ddit3 and Hyou1 Compared to the Aquatic Animal Model of Nile Tilapia (Oreochromis niloticus) Brain Arachidonic Acid Expression
by Po-Kai Pan, Kuang-Teng Wang, Fan-Hua Nan, Tsung-Meng Wu and Yu-Sheng Wu
Int. J. Mol. Sci. 2022, 23(23), 14662; https://doi.org/10.3390/ijms232314662 - 24 Nov 2022
Cited by 1 | Viewed by 1834
Abstract
Anthropogenic climate change is known to be an increased stress that affects aquatic animal behavior and physiological alternations, which can induce the animal’s death. In order to known whether the extracted acetyl-xylogalactan function on the regulation of the external high temperature induced death, [...] Read more.
Anthropogenic climate change is known to be an increased stress that affects aquatic animal behavior and physiological alternations, which can induce the animal’s death. In order to known whether the extracted acetyl-xylogalactan function on the regulation of the external high temperature induced death, we first selected the mammalian cell line “RAW 264.7” used in the previous experiment to evaluate the extracted acetyl-xylogalactan function. We aimed to evaluate the effects of the acetyl-xylogalactan on the RAW 264.7 macrophages and Nile Tilapia stress factor expression under the heat environment. In the in vitro cell observation, we assessed the cell survival, phagocytic activity, intracellular Ca2+ level, mitochondria potential exchange, apoptotic assay findings, galactosidase activity, RNA-seq by NGS and real-time polymerase chain reaction (QPCR) expression. In the in vivo Nile Tilapia observation aimed to evaluate the blood biochemical indicator, brain metabolites exchange and the liver morphology. In our evaluation of RAW 264.7 macrophages, the RNA sequencing and real-time polymerase chain reaction (PCR) was shown to upregulate the expression of the anti-apoptosis Cflar gene and downregulate the expression of the apoptosis factors Ddit3 and Hyou1 to protect macrophages under heat stress. We already knew the extracted acetyl-xylogalactan function on the mammalian “RAW 264.7” system. Following, we used the aquatic Nile Tilapia model as the anthropogenic climate change high temperature experiment. After feeding the Nile Tilapia with the acetyl-xylogalactan, it was found to reduce the brain arachidonic acid (AA) production, which is related to the NF-κB-induced apoptosis mechanism. Combined with the in vitro and in vivo findings, the acetyl-xylogalactan was able to reduce the heat induced cell or tissue stress. Full article
(This article belongs to the Special Issue Novel Mediators in NF-κB Activation)
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15 pages, 4280 KiB  
Article
Ubiquitin Specific Protease USP48 Destabilizes NF-κB/p65 in Retinal Pigment Epithelium Cells
by Serena Mirra, Laura Sánchez-Bellver, Carmela Casale, Alessandra Pescatore and Gemma Marfany
Int. J. Mol. Sci. 2022, 23(17), 9682; https://doi.org/10.3390/ijms23179682 - 26 Aug 2022
Cited by 8 | Viewed by 2158
Abstract
Activation of NF-κB transcription factor is strictly regulated to accurately direct cellular processes including inflammation, immunity, and cell survival. In the retina, the modulation of the NF-κB pathway is essential to prevent excessive inflammatory responses, which plays a pivotal role in many retinal [...] Read more.
Activation of NF-κB transcription factor is strictly regulated to accurately direct cellular processes including inflammation, immunity, and cell survival. In the retina, the modulation of the NF-κB pathway is essential to prevent excessive inflammatory responses, which plays a pivotal role in many retinal neurodegenerative diseases, such as age-related macular degeneration (AMD), diabetic retinopathy (DR), and inherited retinal dystrophies (IRDs). A critical cytokine mediating inflammatory responses in retinal cells is tumor necrosis factor-alpha (TNFα), leading to the activation of several transductional pathways, including NF-κB. However, the multiple factors orchestrating the appropriate regulation of NF-κB in retinal cells still remain unclear. The present study explores how the ubiquitin-specific protease 48 (USP48) downregulation impacts the stability and transcriptional activity of NF-κB/p65 in retinal pigment epithelium (RPE), at both basal conditions and following TNFα stimulation. We described that USP48 downregulation stabilizes p65. Notably, the accumulation of p65 is mainly detectable in the nuclear compartment and it is accompanied by an increased NF-κB transcriptional activity. These results delineate a novel role of USP48 in negatively regulating NF-κB in retinal cells, providing new opportunities for therapeutic intervention in retinal pathologies. Full article
(This article belongs to the Special Issue Novel Mediators in NF-κB Activation)
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10 pages, 1373 KiB  
Article
Nicotinamide Mononucleotide and Coenzyme Q10 Protects Fibroblast Senescence Induced by Particulate Matter Preconditioned Mast Cells
by Tsong-Min Chang, Ting-Ya Yang and Huey-Chun Huang
Int. J. Mol. Sci. 2022, 23(14), 7539; https://doi.org/10.3390/ijms23147539 - 7 Jul 2022
Cited by 8 | Viewed by 4488
Abstract
Particulate matter (PM) pollutants impose a certain degree of destruction and toxicity to the skin. Mast cells in the skin dermis could be activated by PMs that diffuse across the blood vessel after being inhaled. Mast cell degranulation in the dermis provides a [...] Read more.
Particulate matter (PM) pollutants impose a certain degree of destruction and toxicity to the skin. Mast cells in the skin dermis could be activated by PMs that diffuse across the blood vessel after being inhaled. Mast cell degranulation in the dermis provides a kind of inflammatory insult to local fibroblasts. In this study, we evaluated human dermal fibroblast responses to conditioned medium from KU812 cells primed with PM. We found that PM promoted the production of proinflammatory cytokines in mast cells and that the cell secretome induced reactive oxygen species and mitochondrial reactive oxygen species production in dermal fibroblasts. Nicotinamide mononucleotide or coenzyme Q10 alleviated the generation of excessive ROS and mitochondrial ROS induced by the conditioned medium from PM-activated KU812 cells. PM-conditioned medium treatment increased the NF-κB expression in dermal fibroblasts, whereas NMN or Q10 inhibited p65 upregulation by PM. The reduced sirtuin 1 (SIRT 1) and nuclear factor erythroid 2-related Factor 2 (Nrf2) expression induced by PM-conditioned medium was reversed by NMN or Q10 in HDFs. Moreover, NMN or Q10 attenuated the expression of senescent β-galactosidase induced by PM-conditioned KU812 cell medium. These findings suggest that NMN or Q10 ameliorates PM-induced inflammation by improving the cellular oxidative status, suppressing proinflammatory NF-κB, and promoting the levels of the antioxidant and anti-inflammatory regulators Nrf2 and SIRT1 in HDFs. The present observations help to understand the factors that affect HDFs in the dermal microenvironment and the therapeutic role of NMN and Q10 as suppressors of skin aging. Full article
(This article belongs to the Special Issue Novel Mediators in NF-κB Activation)
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