Search Results (41)

Since the domestication of plants, pathogenic fungi have consistently threatened crop production, evolving genetically to develop increased virulence under various selection pressures. Understanding their evolutionary trends is crucial for predicting and designing control measures against future disease outbreaks. This paper reviews the evolution of fungal pathogens from natural habitats to agricultural settings, focusing on eight significant phytopathogens: Pyricularia oryzae, Botrytis cinerea, Puccinia spp., Fusarium graminearum, F. oxysporum, Blumeria graminis, Zymoseptoria tritici, and Colletotrichum spp. Also, we explore the mechanism used to understand evolutionary trends in these fungi. The studied pathogens have evolved in agroecosystems through either (1) introduction from elsewhere; or (2) local origins involving co-evolution with host plants, host shifts, or genetic variations within existing strains. Genetic variation, generated via sexual recombination and various asexual mechanisms, often drives pathogen evolution. While sexual recombination is rare and mainly occurs at the center of origin of the pathogen, asexual mechanisms such as mutations, parasexual recombination, horizontal gene or chromosome transfer, and chromosomal structural variations are predominant. Farming practices like mono-cropping resistant cultivars and prolonged use of fungicides with the same mode of action can drive the emergence of new pathotypes. Furthermore, host range does not necessarily impact pathogen adaptation and evolution. Although halting pathogen evolution is impractical, its pace can be slowed by managing selective pressures, optimizing farming practices, and enforcing quarantine regulations. The study of pathogen evolution has been transformed by advancements in molecular biology, genomics, and bioinformatics, utilizing methods like next-generation sequencing, comparative genomics, transcriptomics and population genomics. However, continuous research remains essential to monitor how pathogens evolve over time and to develop proactive strategies that mitigate their impact on agriculture. Full article

A preliminary in silico screening of 94 compounds, including colchicine, caffeine, gramine, and their derivatives, was conducted to identify potential herbicides, insecticides, and fungicides. Among the compounds tested, only gramine and its 13 derivatives exhibited potential activity. These compounds were further tested against eight species of insects, three species of weeds, and four species of fungi. All of the tested alkaloids were found to be ineffective as herbicides and insecticides, but they did exhibit some fungicidal activity. Four gramine derivatives showed some activity against Phytophthora infestans, Botrytis cinerea, Zymoseptoria tritici, and Fusarium culmorum. Full article

Septoria leaf blotch (SLB), caused by Zymoseptoria tritici, is one of the most important foliar diseases of wheat. The management of this disease is assisted by selecting a sowing time and seeding density that is less favorable to the pathogen. The aim of this research was to evaluate the severity of SLB on winter wheat cv. ‘Etana’ sown at three different sowing times and three seed rates. The severity assessments were performed on the upper two leaves three times during the growth stages using the phenological growth stage key developed by the Biologische Bundesanstalt, Bundessortenamt, and Chemical industry (BBCH), namely stages 37–41, 59–65, and 75. The area under the disease progress curve (AUDPC) was evaluated in each plot. In 2022, seed rates showed significant differences (p = 0.0047), while sowing times did not show significant differences. In contrast, both seed rate and sowing time showed significant effects in 2021 (p = 0.0004 for sowing time and p < 0.0001 for seed rate). During the 2021 growth stage BBCH 75, late sowing times exhibited a significant reduction in SLB on the first leaf. The reduction ranged from 47.0% to 52.6% compared to the optimal sowing time, and from 59.2% to 66.2% compared to the early sowing time. At optimal sowing times (between 11 September and 25 September), seed rates of 400 and 450 seeds/m² resulted in a low SLB. At late sowing times in 2022, a lower SLB (43.2% compared to the early sowing time) was obtained from seed rates of 400 seeds/m². No significant interaction was observed between sowing time and seed rate across both study years. In the absence of interaction, the effects of sowing time and seed rate on SLB severity were independent and not additive. In 2022, the highest values of AUDPC were recorded for the early sowing time and the highest seed rate. Increasing the seed rate (450 seeds m⁻²) gave higher AUDPC at early sowing time with significant differences compared to other seed rates at optimal or late sowing times. In conclusion, our findings highlight the significant influence of sowing time and seed rate on SLB severity in winter wheat. Understanding these factors can inform agricultural practices to better manage SLB. Future research should explore additional agronomic practices and environmental factors to develop comprehensive strategies for SLB management. Full article

Due to being sessile, plants develop a broad range of defense pathways when they face abiotic or biotic stress factors. Although plants are subjected to more than one type of stress at a time in nature, the combined effects of either multiple stresses of one kind (abiotic or biotic) or more kinds (abiotic and biotic) have now been realized in agricultural lands due to increases in global warming and environmental pollution, along with population increases. Soil-borne pathogens, or pathogens infecting aerial parts, can have devastating effects on plants when combined with other stressors. Obtaining yields or crops from sensitive or moderately resistant plants could be impossible, and it could be very difficult from resistant plants. The mechanisms of combined stress in many plants have previously been studied and elucidated. Recent studies proposed new defense pathways and mechanisms through signaling cascades. In light of these mechanisms, it is now time to develop appropriate strategies for crop protection under multiple stress conditions. This may involve using disease-resistant or stress-tolerant plant varieties, implementing proper irrigation and drainage practices, and improving soil quality. However, generation of both stress-tolerant and disease-resistant crop plants is of crucial importance. The establishment of a database and understanding of the defense mechanisms under combined stress conditions would be meaningful for the development of resistant and tolerant plants. It is clear that leaf pathogens show great tolerance to salinity stress and result in pathogenicity in crop plants. We noticed that regulation of the stomata through biochemical applications and some effort with the upregulation of the minor gene expressions indirectly involved with the defense mechanisms could be a great way to increase the defense metabolites without interfering with quality parameters. In this review, we selected wheat as a model plant and Zymoseptoria tritici as a model leaf pathogen to evaluate the defense mechanisms under saline conditions through physiological, biochemical, and molecular pathways and suggested various ways to generate tolerant and resistant cereal plants. Full article

Zymoseptoria tritici (Z. tritici) is the main threat to global food security; it is a fungal disease that presents one of the most serious threats to wheat crops, causing severe yield losses worldwide, including in Kazakhstan. The pathogen leads to crop losses reaching from 15 to 50%. The objectives of this study were to (1) evaluate a wheat collection for Z. tritici resistance during the adult plant and seedling growth stages, (2) identify the sources of resistance genes that provide resistance to Z. tritici using molecular markers linked to Stb genes, and (3) identify potentially useful resistant wheat genotypes among cultivars and advanced breeding lines. This study evaluated 60 winter and spring wheat genotypes for Z. tritici resistance. According to the field reactions, 22 entries (35.7%) showed ≤10% disease severity in both years. The resistant reaction to a mix of Z. tritici isolates in the seedling stage was associated with adult plant resistance to disease in four wheat entries. The resistance of Rosinka 3 was due to the presence of Stb8; Omskaya 18 showed an immune reaction in the field and a moderately susceptible reaction in the seedling stage, possibly provided by a combination of the Stb7 and Stb2 genes. The high resistance in both the adult and seedling stages of Omskaya 29 and KR11-03 was due to the Stb4 and Stb2 genes and, possibly, due to the presence of unknown genes. A linked marker analysis revealed the presence of several Stb genes. The proportion of wheat entries with Stb genes was quite high at twenty-seven of the genotypes tested (45.0%), including four from Kazakhstan, nine from Russia, nine from the CIMMYT-ICARDA-IWWIP program, and five from the CIMMYT-SEPTMON nursery. Among the sixty entries, ten (16.7%) carried the resistance genes Stb2 and Stb8, and the gene Stb4 was found in seven cultivars (11.6%). Marker-assisted selection can be efficiently applied to develop wheat cultivars with effective Stb gene combinations that would directly assist in developing durable resistance in Kazakhstan. Resistant genotypes could also be used as improved parents in crossing programs to develop new wheat cultivars. Full article

Septoria tritici blotch (STB) ais one of the most damaging winter wheat diseases worldwide, presenting a significant threat to its yields. The causal STB agent, Zymoseptoria tritici, also presents a challenge to control due to its rapid adaptation to fungicides. This requires researchers to continuously monitor the pathogen and investigate and explore strategies to manage the spread of the disease and the development of resistance in the pathogen. Therefore, this study presents the current situation and describes changes in the sensitivity of Z. tritici isolates from Lithuania to quinone outside inhibitors (QoIs) and succinate dehydrogenase inhibitors (SDHIs) for the years 2019–2022. The isolates were tested at five different concentrations of two QoI fungicides (azoxystrobin and pyraclostrobin) and three SDHI fungicides (fluxapyroxad, benzovindiflupyr, and bixafen). During the test period, the EC50 values of the tested QoIs increased, while no clear changes were observed in the SDHIs. The most pronounced shift was observed for the active QoI substance pyraclostrobin. The distribution of the EC50 values of the SDHI fungicides showcased one isolate with an outstandingly high EC50 value of 2.6 mg L⁻¹. The results of this study did not reveal any strong patterns of cross-resistance between the fungicides tested. However, a significant positive, moderate correlation (r = 0.55) was found between fluxapyroxad and benzovindiflupyr. Overall, the results of this study contribute to the understanding of the fungicide-resistance situation of Z. tritici in Lithuania and may complement management strategies for the pathogen and its fungicide resistance. Full article

Wheat interactions against fungal pathogens, such as Zymoseptoria tritici, are affected by changes in abiotic factors resulting from global climate change. This situation demands in-depth knowledge of how predicted increases in temperature and CO₂ concentration ([CO₂]) will affect wheat—Z. tritici interactions, especially in durum wheat, which is mainly grown in areas considered to be hotspots of climate change. Therefore, we characterized the response of one susceptible and two resistant durum wheat accessions against Z. tritici under different environments in greenhouse assays, simulating the predicted conditions of elevated temperature and [CO₂] in the far future period of 2070–2099 for the wheat-growing region of Córdoba, Spain. The exposure of the wheat—Z. tritici pathosystem to elevated temperature reduced disease incidence compared with the baseline weather conditions, mainly affecting pathogen virulence, especially at the stages of host penetration and pycnidia formation and maturation. Interestingly, simultaneous exposure to elevated temperature and [CO₂] slightly increased Z. tritici leaf tissue colonization compared with elevated temperature weather conditions, although this fungal growth did not occur in comparison with baseline conditions, suggesting that temperature was the main abiotic factor modulating the response of this pathosystem, in which elevated [CO₂] slightly favored fungal development. Full article

In a survey to evaluate the potential of lichens associated with gypsum areas as sources of new antifungal metabolites, six species of lichens were collected in the gypsum outcrops of the Sorbas Desert (Diploschistes ocellatus and Seirophora lacunosa) and the Tabernas Desert (Cladonia foliacea, Acarospora placodiformis, Squamarina lentigera and Xanthoparmelia pokornyi) in southern Spain. Raw lichen acetone extracts were tested against a panel of seven phytopathogenic fungi, including Botrytis cinerea, Colletotrichum acutatum, Fusarium oxysporum f.sp cubense TR4, Fusarium ploriferaum, Magnaporthe grisea, Verticillium dahliae and Zymoseptoria tritici. Active extracts of Cladonia foliacea, Xanthoparmelia pokornyi and Squamarina lentigera were analyzed by HPLC-MS/MS and Molecular Networking to identify possible metabolites responsible for the antifungal activity. A total of ten depside-like metabolites were identified by MS/MS dereplication and NMR experiments, of which one was a new derivative of fumaroprotocetraric acid. The compounds without previously described biological activity were purified and tested against the panel of fungal phytopathogens. Herein, the antifungal activity against fungal phytopathogens of 4′-O-methylpaludosic acid, divaricatic acid and stenosporic acid is reported for the first time. Stenosporic and divaricatic acids displayed a broad antifungal spectrum against seven relevant fungal phytopathogens in a micromolar range, including the extremely resistant fungus F. oxysporum f. sp. cubense Tropical Race 4 (TR4). 4′-O-methylpaludosic acid exhibited specific antifungal activity against the wheat pathogen Z. tritici, with an IC50 of 38.87 µg/mL (87.1 µM) in the absorbance-based assay and 24.88 µg/mL (55.52 µM) in the fluorescence-based assay. Full article

The wheat pathogen Zymoseptoria tritici can respond to light by modulating its gene expression. Because several virulence-related genes are differentially expressed in response to light, different wavelengths could have a crucial role in the Z. tritici–wheat interaction. To explore this opportunity, the aim of this study was to analyze the effect of blue (470 nm), red (627 nm), blue–red, and white light on the in vitro and in planta development of Z. tritici. The morphology (mycelium appearance, color) and phenotypic (mycelium growth) characteristics of a Z. tritici strain were evaluated after 14 days under the different light conditions in two independent experiments. In addition, bread wheat plants were artificially inoculated with Z. tritici and grown for 35 days under the same light treatments. The disease incidence, severity, and fungal DNA were analyzed in a single experiment. Statistical differences were determined by using an ANOVA. The obtained results showed that the different light wavelengths induced specific morphological changes in mycelial growth. The blue light significantly reduced colony growth, while the dark and red light favored fungal development (p < 0.05). The light quality also influenced host colonization, whereby the white and red light had stimulating and repressing effects, respectively (p < 0.05). This precursory study demonstrated the influence of light on Z. tritici colonization in bread wheat. Full article

Septoria tritici blotch (STB), caused by the fungus Zymoseptoria tritici Desm., is the most important disease affecting wheat in Northern Europe. There is a strong correlation between STB and weather variables; therefore, research on climate change and epidemiology is essential. In a long-term survey across 25 years, we evaluated the epidemiological development of STB at a representative location under maritime climatic conditions. The surveys conducted between 1996 and 2021 showed an increase in disease severity of STB with respect to time. At the survey location, the plants were also evaluated for other diseases, but other foliar diseases were only observed with negligible severities. However, a continuous increase in the severity of STB was observed throughout the survey. During the survey period, there was no significant relationship between disease severity and single weather parameters (e.g., temperature and precipitation). However, seasonal changes in the progression of conducive STB conditions within the season were observed during the survey. Therefore, STB infections occurred at increased temperatures due to infections later during the growth season. In general, the distribution of conducive weather conditions, which supports an infection, determines the epidemiological behaviour of STB during the growing season. Due to these enhanced STB epidemics, a decline in wheat production has been observed, especially in agronomic practices of maritime climates. This is particularly the case if temperature and precipitation during the growing season are affected by climate change. Full article

The Septoria blotch is one of the most economically harmful diseases of common wheat in Russia and the world. The disease is mainly caused by two pathogen species: Zymoseptoria tritici that damages the leaves, and Parastagonospora nodorum that strikes the leaves and ears. Resistance genes of the alien relatives are traditionally used for genetic defense of cultivars. The aims of the research were to study the resistance of the tall wheatgrass Thinopyrum ponticum (Podp.) Z.-W. Liu and R.-C. Wang and perspective introgressive lines of spring common wheat with its genetic material to Septoria blotch, and to characterize their agronomical properties to be used in breeding programs in Western Siberia. The studies were carried out in 2015–2019 in the field conditions of the southern forest-steppe (Omsk, Russia) on a natural infection background and according to standard methods. The Septoria diseases developed on the wheat in the period of milk-wax ripeness, independently of humid or dry weather conditions. In 2016, a sharp increase in leaf lesion was noted, probably associated with changes in the Z. tritici population. In 2017, the ratio of Z. tritici and P. nodorum was similar, and in 2019 Z. tritici prevailed. During the research, the lines that combined leaf and ear resistance to damage with high yield and grain quality were selected. Full article

Septoria leaf blotch (SLB) is among the most damaging foliar diseases of wheat worldwide. In this study, data for seven cropping seasons (2003–2009) at four representative wheat-growing sites in the Grand-Duchy of Luxembourg (GDL) were used to assess SLB risk on the three upper leaves (L3 to L1, L1 being the flag leaf) based on the combination of conducive weather conditions, simulated potential daily infection events by Zymoseptoria tritici, and SLB severity on lower leaves between stem elongation and mid-flowering. Results indicated that the variability in SLB severity on L3 to L1 at soft dough was significantly (p < 0.05) influenced by the disease severity on the lower leaf L5 at L3 emergence and the sum of daily mean air temperature between stem elongation and mid-flowering. Moreover, analyzing the predictive power of these variables through multiple linear regression indicated that the disease severity on L5 at L3 emergence and mild weather conditions between stem elongation and mid-flowering critically influenced the progress of SLB later in the season. Such results can help fine tune weather-based SLB risk models to guide optimal timing of fungicide application in winter wheat fields and ensure economic and ecological benefits. Full article

In Morocco, extensive use, traditional practices, and climate change have seriously impacted the productivity of aromatic and medicinal plants (AMP). To mitigate these adverse effects, this study aims at evaluating the potential of the arbuscular mycorrhizal fungi (AMF), namely Rhizophagusirregularis and Funneliformis mosseae, in improving biomass, essential oils (EOs), and biomolecule production in Thymus satureioides, T. pallidus, and Lavandula dentata. Compared to non-inoculated-AMP, AMF induced significant increases in biomass production by 37.1, 52.4, and 43.6%, and in EOs yield by 21, 74, and 88% in T. satureioides, T. pallidus, and L. dentata, respectively. The EOs of inoculated-AMP exhibited increased proportions of major compounds such as thymol (23.7%), carvacrol (23.36%), and borneol (18.7%) in T. satureioides; α-terpinene (32.6%), thymol (28.79%), and δ-terpinene (8.1%) in T. pallidus; and camphor (58.44%), isoborneol (8.8%), and fenchol (4.1%) in L. dentata. Moreover, AMF significantly improved the anti-germinative and antifungal activities of the EOs. Indeed, IC₅₀ values decreased by 1.8, 16.95, and 2.2 times against Blumerai graminis, Zymoseptoria tritici, and Fusarium culmorum, respectively, compared to non-inoculated-AMP. This study highlights the performance of the symbiosis between AMF and AMPs in terms of high quality of EOs production while respecting the environment. The associations F. mosseae-Thymus and R. irregularis-Lavandula are the most efficient. Full article

Increased drug efflux compromises the efficacy of a large panel of treatments in the clinic against cancer or bacterial, fungal, and viral diseases, and in agriculture due to the emergence of multidrug-resistant pathogenic fungi. Until recently, to demonstrate increased drug efflux, the use of labeled drugs or fluorescent dyes was necessary. With the increasing sensitivity of detection devices, direct assessment of drug efflux has become realistic. Here, we describe a medium-throughput method to assess the intracellular drug concentration in the plant pathogenic fungus Zymoseptoria tritici cultivated in the presence of a sublethal fungicide concentration. As a model fungicide, we used the succinate-dehydrogenase inhibitor boscalid. The boscalid concentration was assessed in the different culture fractions using mass spectrometry linked to liquid chromatography (LC-MS/MS). The ratio between the intracellular and total boscalid amount was used as an inversed proxy for the efflux activity. Using isogenic mutant strains known for their differential efflux capacities, we validated the negative correlation between the intracellular boscalid concentration and efflux activity. In addition, intra-cellular fungicide accumulation explains the susceptibility of the tested strains to boscalid. This assay may be useful in lead development when a new molecule displays good inhibitory activity against its isolated target protein but fails to control the target organism. Full article

Wheat and barley are the main cereal crops cultivated worldwide and serve as staple food for a third of the world’s population. However, due to enormous biotic stresses, the annual production has significantly reduced by 30–70%. Recently, the accelerated use of beneficial bacteria in the control of wheat and barley pathogens has gained prominence. In this review, we synthesized information about beneficial bacteria with demonstrated protection capacity against major barley and wheat pathogens including Fusarium graminearum, Zymoseptoria tritici and Pyrenophora teres. By summarizing the general insights into molecular factors involved in plant-pathogen interactions, we show to an extent, the means by which beneficial bacteria are implicated in plant defense against wheat and barley diseases. On wheat, many Bacillus strains predominantly reduced the disease incidence of F. graminearum and Z. tritici. In contrast, on barley, the efficacy of a few Pseudomonas, Bacillus and Paraburkholderia spp. has been established against P. teres. Although several modes of action were described for these strains, we have highlighted the role of Bacillus and Pseudomonas secondary metabolites in mediating direct antagonism and induced resistance against these pathogens. Furthermore, we advance a need to ascertain the mode of action of beneficial bacteria/molecules to enhance a solution-based crop protection strategy. Moreover, an apparent disjoint exists between numerous experiments that have demonstrated disease-suppressive effects and the translation of these successes to commercial products and applications. Clearly, the field of cereal disease protection leaves a lot to be explored and uncovered. Full article