Search Results (71)

Norway spruce (Picea abies (L.) H. Karst.) is a primary forest-forming species in the European part of Russia, both in terms of its distribution and economic importance. A number of studies indicate that one of the reasons for the disturbance of spruce forests is linked to rising temperatures, particularly the detrimental effects of extreme droughts. The aim of our research is to identify changes in the structural and functional organization of mature spruce forests at the center of the East European Plain. The study was conducted in intact spruce forests using resurveyed vegetation relevés within the Smolensk–Moscow Upland, with relevés repeated after 40 years (in 1985 and 2025). Changes in structural and functional parameters of spruce communities were analyzed. The results showed that significant disturbances of the tree layer led to changes in the vegetation of subordinate layers, as well as the successional dynamics of spruce forests. It was found that following the collapse of old-growth spruce stands, two types of secondary succession developed: (1) with the renewal of spruce and (2) with active development of shrubs (hazel and rowan) and undergrowth of broadleaved species. It was also demonstrated that the typological diversity of the studied communities changed over 40 years not only due to the loss of the tree layer and the formation of new “non-forest” types but also because several mixed spruce-broadleaved communities transitioned into broadleaved ones, and pine–spruce communities of boreal origin shifted to nemoral types. An analysis of the complete species composition of spruce forests based on Ellenberg’s scales scoring revealed changes in habitat conditions over the 40-year period. A noticeable trend was an increase in the proportion of thermophilic and alkaliphilic species, indicating a shift toward a nemoral vegetation spectrum. It is expected that under the current forest management regime, the next 40 to 60 years will see a decline in the proportion of spruce within mixed stands, potentially culminating in the complete collapse of monospecific spruce forests in the center of the East European Plain. Full article

The development of robust and efficient β-mannanases is key to advancing environmentally friendly industrial processes, such as guar gum fracturing fluid gel-breaking. Here, we report the identification and characterization of MG4, a novel thermotolerant and alkaliphilic β-mannanase mined from the Earth’s Microbiome database. The recombinant enzyme has a molecular weight of 63 kDa. MG4 displayed maximum activity at 65 °C and pH 9.0, and exhibited remarkable stability across a broad pH range (7.0–10.0). It retained over 80% of its activity after incubation at 50 °C for 1 h, and its activity was enhanced more than 40% by Mg²⁺ or Ca²⁺. Moreover, MG4 (20 mg/L) reduced the viscosity of guar gum fracturing fluid to <5 m·PaS within 30 min, outperforming ammonium persulfate (APS, 500 mg/L) which required 1 h, and produced 64.5% less insoluble residue. TEM imaging directly visualized the disruption of the guar gum polymer network by MG4, explaining its efficacy and suggesting reduced formation damage risk compared to chemical breakers. This work characterizes a highly promising biocatalyst whose thermostability, alkaliphily, efficient gel-breaking, low residue yield, and minimal formation damage potential position it as a superior, eco-friendly alternative for petroleum industry applications. Full article

Thermophilic microorganisms are among the key natural sources of thermostable enzymes, found not only in geothermal areas but also in arid environments. In this study, eight Geobacillus strains were isolated from the arid sands of Aïn Sefra (Naâma, Algeria) and characterized both phenotypically and genetically. All strains exhibited an optimal growth temperature of 70 °C, with most showing alkaliphilic pH preferences. Proteomic and molecular analyses (MALDI-TOF MS, 16S rRNA) identified Geobacillus kaustophilus as predominant, with BOX-PCR and RAPD-PCR revealing notable intraspecies diversity. All strains synthesized at least one thermostable enzyme (protease, amylase, laccase, or DNase) at their optimal temperature (70 °C), positioning them as promising candidates for biotechnological processes requiring extreme thermal conditions. Full article

Soil salinization poses a significant constraint to agricultural productivity. However, certain plant growth-promoting bacteria (PGPB) can mitigate salinity stress and enhance crop performance. In this study, a bacterial isolate, R-18, isolated from saline-alkali soil in Ningxia, China, was identified as Enterobacter bugandensis based on 16S rRNA gene sequencing. The isolate was characterized for its morphological, biochemical, and plant growth-promoting traits and was evaluated for its potential to alleviate NaCl-induced stress in maize (Zea mays L.) under hydroponic conditions. Isolate R-18 exhibited halotolerance, surviving at NaCl concentrations ranging from 2.0% to 10.0%, and alkaliphilic adaptation, growing at pH 8.0–11.0. Biochemical assays confirmed it as a Gram-negative bacterium, displaying positive reactions in the Voges–Proskauer (V–P) tests, catalase activity, citrate utilization, fluorescent pigment production, starch hydrolysis, gelatin liquefaction, and ammonia production, while testing negative for the methyl red and cellulose hydrolysis. Notably, isolate R-18 demonstrated multiple plant growth-promoting attributes, including nitrogen fixation, phosphate and potassium solubilization, ACC deaminase activity, and indole-3-acetic acid (IAA) biosynthesis. Under 100 mM NaCl stress, inoculation with isolate R-18 significantly enhanced maize growth, increasing plant height, stem dry weight, root fresh weight, and root dry weight by 20.64%, 47.06%, 34.52%, and 31.25%, respectively. Furthermore, isolate R-18 improved ion homeostasis by elevating the K⁺/Na⁺ ratio in maize tissues. Physiological analyses revealed increased chlorophyll and proline content, alongside reduced malondialdehyde (MDA) levels, indicating mitigated oxidative damage. Antioxidant enzyme activity was modulated, with decreased superoxide dismutase (SOD) and peroxidase (POD) activities but increased catalase (CAT) activity. These findings demonstrated that Enterobacter bugandensis R-18 effectively alleviated NaCl-induced growth inhibition in maize by enhancing osmotic adjustment, reducing oxidative stress, and improving ion balance. Full article

Accurate gene expression quantification using reverse transcription quantitative PCR (RT-qPCR) requires stable reference genes (RGs) for reliable normalization. However, few studies have systematically identified RGs suitable for simultaneous high salt, alkaline, and high-temperature conditions. This study addresses this gap by evaluating the stability of eight candidate RGs in the anaerobic halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WN-LF^T under combined salt, alkali, and thermal stresses. The stability of these candidate RGs was assessed using five statistical algorithms: Delta CT, geNorm, NormFinder, BestKeeper, and RefFinder. Results indicated that recA exhibited the highest expression stability across all tested conditions and proved adequate as a single RG for normalization in both RT-qPCR and droplet digital PCR (ddPCR) assays. Furthermore, recA alone or combined with other RGs (sigA, rsmH) effectively normalized the expression of seven stress-response genes (proX, opuAC, mnhE, nhaC, trkH, ducA, and pimT). This work represents the first systematic validation of RGs under polyextreme stress conditions, providing essential guidelines for future gene expression studies in extreme environments and aiding research on microbial adaptation mechanisms in halophilic, alkaliphilic, and thermophilic microorganisms. Full article

Alkalihalophilus marmarensis is an obligate alkaliphile with exceptional tolerance to high-pH environments, making it a promising candidate for industrial bioprocesses that require contamination-resistant and extremophilic production platforms. However, its practical deployment is hindered by limited biomass formation under extreme conditions, which constrains overall productivity. This study presents a model-driven investigation of how pH (8.8 and 10.5), culture duration (24 and 48 h), and nitrogen source composition (peptone and meat extract) affect cell dry mass, lactate, and protease synthesis. Using the response surface methodology and multi-objective optimization, we established predictive models (R² up to 0.92) and uncovered key trade-offs in biomass and metabolite yields. Our findings reveal that peptone concentration critically shapes the metabolic output, with low levels inhibiting growth and high levels suppressing protease activity. Maximum cell dry mass (4.5 g/L), lactate (19.3 g/L), and protease activity (43.5 U/mL) were achieved under distinct conditions, highlighting the potential for targeted process tuning. While the model validation confirmed predictions for lactate, deviations in cell dry mass and protease outputs underscore the complexity of growth–product interdependencies under nutrient-limited regimes. This work delivers a foundational framework for developing fermentations with A. marmarensis and advancing its application in sustainable, high-pH industrial bioprocesses. The insights gained here can be further leveraged through synthetic biology and bioprocess engineering to fully exploit the metabolic potential of obligate alkaliphiles like A. marmarensis. Full article

Enzymatic modification of Kraft lignin under alkaline conditions was investigated using bilirubin oxidase (BOD) in borate buffer (pH 10). Control solubilization without enzyme addition revealed a notable increase in molar mass (up to 1.7-fold) and potential borate complexation with lignin hydroxyl groups, as evidenced by thermogravimetric and ¹¹B NMR analyses. BOD treatments induced substantial polymerization, with molar mass increases of up to 4-fold for insoluble fractions after 24 h, while soluble fractions exhibited progressive increases over 5 days. Quantitative ³¹P NMR showed reductions in aliphatic and phenolic hydroxyl groups by 20%, suggesting oxidative coupling reactions, particularly through 4-O-5′ and 5-5′ linkages. Solid-state ¹³C NMR confirmed structural changes associated with polymerization. Dynamic light scattering (DLS) indicated the presence of colloidal aggregates, potentially explaining challenges in HSQC NMR signal acquisition. These findings highlight the efficacy of bilirubin oxidase in catalyzing lignin polymerization and underscore the structural impact of borate–lignin interactions in alkaline media, paving the way for advanced lignin valorization strategies. Full article

The pressure on the environment from wastewater has been increasing in line with industrialization and urbanization, thus calling for better and eco-friendly solutions for wastewater treatment. Extremophilic microorganisms, which can grow in extreme conditions including high salinity, acidity, and temperature, can be applied in wastewater bioremediation. This review assesses the various functions of extremophiles, halophiles, thermophiles, alkaliphiles, and acidophiles in the treatment of organic and inorganic pollutants. They are capable of catabolizing a wide range of hazardous chemicals, such as polycyclic aromatic hydrocarbons, phenolic compounds, and heavy metals. Moreover, extremophilic microalgae, like Galdieria sulphuraria, have been effective in nutrient removal, biosorption of heavy metals, and pollutant conversion into valuable biomass. This dual-functioning, therefore, helps not only in wastewater treatment but also in the production of biofuel and biofertilizer, making the process cost-effective. The use of extremophiles in biofilm reactors improves pollutant removal, with less energy input. Extremophilic microorganisms can, therefore, be used to revolutionize wastewater management by providing green solutions to current treatment approaches. This review discusses the existing drawbacks of wastewater treatment along with the additional requirements needed to enhance the capability of bioremediation and potential future research. Full article

Alkaline environments such as alkaline lands, lakes, and industrial wastewater are not conducive to the growth of plants and microorganisms due to high pH and salinity. ChbZIP1 is a bZIP family transcription factor isolated from an alkaliphilic microalgae (Chlorella sp. BLD). Previous studies have demonstrated its ability to enhance alkaline tolerance in Arabidopsis thaliana. However, the potential of ChbZIP1 to confer similar alkaline tolerance in other microalgae remains unclear, and the specific mechanisms are not fully understood. The analysis of cellular physiological and biochemical indicators revealed that the ChbZIP1 transformants exhibited enhanced photosynthetic activity, increased lipid accumulation, and reduced fatty acid unsaturation. Genes associated with cellular reactive oxygen species (ROS) detoxification were found to be upregulated, and a corresponding increase in antioxidant enzyme activity was detected. In addition, the relative abundance of intracellular ROS and malondialdehyde (MDA) was significantly lower in the transformants. In summary, our research indicates that ChbZIP1 enhances the tolerance of Chlamydomonas reinhardtii to alkaline environments through several mechanisms, including the repair of damaged photosynthesis, increased lipid accumulation, improved fatty acid unsaturation, and enhanced antioxidant enzyme activity. This study aims to contribute to a more comprehensive understanding of the mechanisms underlying alkalinity tolerance in microalgae and offers new insights and theoretical foundations for the utilization of microalgae in alkaline environments. Full article

Extremophiles, microorganisms blooming in extreme environmental conditions, hold particular significance in the domain of microbial research. This review paper focuses on extremophilic microorganisms, emphasizing their adaptations and the diverse products they generate, with a particular emphasis on exopolysaccharides (EPSs). EPSs, high molecular weight carbohydrate biopolymers, stand out as valuable products with applications across various industries. The review explores EPS production by bacteria in extreme conditions, including thermophilic, halophilic, and psychrophilic environments. Noteworthy examples, such as B. thermantarcticus and H. smyrnensis AAD6T, highlight the vast potential of extremophiles in EPS production. Additionally, the paper explores the major synthesis pathways of EPSs, shedding light on the factors influencing biosynthesis. The commercial significance of EPSs, especially for extremophiles, is underlined by their applications in medicine, food, environmental protection, agriculture, cosmetics, and more. Furthermore, the review sheds light on the role of extremophiles in various ecosystems, such as acidophiles, alkaliphiles, halophiles, hyperthermophiles, oligotrophs, osmophiles, piezophiles, and radioresistant organisms. This comprehensive analysis highlights the broad impact of extremophilic microorganisms and their EPS products in scientific exploration and commercial innovation. Full article

Rebuilding using outdated methods and tearing down the buildings would have a negative impact on the environment without lowering carbon dioxide emissions or increasing sustainability. This study presents a novel approach to repair that considers environmental and sustainable factors. In contrast to conventional repair methods, the use of Bacillus subtilis as an external biological repair technique could offer a novel and sustainable solution, especially when used on alkali-activated slag (AAS) concrete. By breaking down urea into carbonate and ammonium, alkaliphile bacteria can precipitate calcium carbonate. In an environment rich in calcium, the bacteria’s opposing cell wall (${\mathrm{C}\mathrm{O}}_3^{2-}$) draws in positive calcium anions, which result in the formation of calcite crystals. The pores and crevices in the concrete are filled with these crystals. Incorporating bacteria into the fresh mixing of AAS ingredients is contrasted with using Bacillus subtilis culture in the water curing medium for pure AAS specimens. The effectiveness of both approaches was evaluated. Direct administration of Bacillus subtilis during mixing has a superior outcome regarding mechanical qualities rather than biological therapy, although their effective healing capability in closure of the crack width is similar. The enhancement in compressive and flexural strengths reached 51% and 128% over the control specimens. On the other hand, the healing rate reached nearly 100% for crack widths ranging from 400 to 950 µm. Furthermore, additional studies in this field led to some inferred correlations between the mechanical and durability aspects following healing. Full article

The construction period of pumped storage power stations (PSPS) generates amounts of production wastewater, which may contain pathogenic bacteria and antibiotic resistance genes (ARGs) in these bacteria, potentially posing environmental and health risks. This study used the metagenome approach to analyze the distribution of microorganisms, ARGs and their correlation with water quality indicators in wastewater collected from two typical PSPSs. Coagulation system wastewater exhibits strong alkalinity (11.88), and aggregate system wastewater has high suspended solids (SS, 8 × 10⁴ mg/L), resulting in lower richness and diversity of bacterial communities. Serpentinimonas, a kind of alkaliphilic bacteria, had the highest relative abundance (48.58–99.7%). The ARG subtypes obtained conferred wastewater resistance to tetracycline, macrolide, fluoroquinolone and so on, but wastewater treatment has limited removal effect on ARGs. The results indicate that resistant bacteria and resistance genes can still be present and distributed under highly alkaline conditions, and the removal efficiency of ARGs by wastewater treatment in PSPS is limited. Attention should be given to the environmental and health risks posed by production wastewater, thereby providing a theoretical basis for the sustainable development of the PSPS industry. Full article

Biological treatment processes at low or neutral pH are ineffective for gold mine wastewater treatment. The aim of this study was to develop a new cyanide-rich gold mine wastewater treatment system using alkaliphilic microbial consortia from the Ethiopian Rift Valley soda lake, Lake Chitu. The treatment setup incorporates aerobic and anoxic reactors connected in series and operated for about 200 treatment days. Simulated gold mine wastewater was formulated in the laboratory. Colorimetry was used to measure residual cyanide and reactive nitrogen molecules derived from cyanide biodegradation. Flocks and biofilms developed in the reactors during the acclimatization process. Using sodium cyanide at 200 mg/L as an initial concentration, the consortia degraded to 99.74 ± 0.08% of cyanide, with no significant variation (p > 0.05) occurring when the dose was increased to 800 mg/L. However, changes were observed (p < 0.05) at 1000 mg/L. Acetate was the preferred carbon source for the consortia. The established consortia effectively degraded cyanide to levels below the permissible discharge limit set by the International Cyanide Management Institute (ICMI). This study provides insights into the effectiveness of alkaliphilic microbial consortia derived from soda lakes for treating cyanide-polluted wastewater. Full article

Textile industry wastewater (WW) has intense color, high chemical oxygen demand (COD), pH, and salinity, making it challenging for conventional treatment. Soda lakes, with high alkalinity and salinity, host diverse microbes capable of textile dye degradation. This study evaluated anaerobic/aerobic reactors using alkaliphilic microbial consortia from Lake Chitu, an Ethiopian soda lake, for treating synthetic and real textile WW. The experimental setup consisted of a first-stage anaerobic reactor followed by a second-stage aerobic reactor, operating continuously with a predetermined flow rate and hydraulic residence time. After evaluating synthetic WW, real textile WW was collected in two batches (rounds I and II). The treatment setup removed 99% of the dye color for synthetic WW, 98% for round I, and 96% for round II. COD removal was 87% for synthetic WW, 86% for round I, and 93.37% for round II. TKN removal reached 90% for synthetic WW, 91% for round I, and 96% for round II at a steady state. Residual COD and TKN values met the final effluent discharge standards. GC–MS and IR analyses revealed that dyes were broken down into intermediate organic compounds under anaerobic conditions and further degraded into smaller molecules under aerobic conditions. This integrated reactor approach effectively removes dyes and enhances COD and TKN removal. The study’s novelty lies in evaluating both synthetic and real textile WW using integrated reactors under alkaline conditions in a continuous process, inoculating alkaliphilic consortia, without pre-enrichment or external nutrient addition to real WW. The study provides insights into the effectiveness of alkaliphilic microbial consortia derived from soda lakes for treating textile WW using integrated reactor conditions. Reactor microbiome characterization is needed to further explore microbial diversity and community structure. Full article

The continuous dumping of industrial solid wastes into the immediate environment is incommodious since these waste materials cause pollution and serious hazards to human health. In addition, these solid wastes are complex and consist of toxic chemical substances, heavy metals, and valuable metals, hence warranting treatment before disposal. Bioleaching is a green and sustainable technology for the solubilization and mobilization of metals from solid matrices. The leaching efficacy is contingent on the types and physiology of the organisms, the elemental content of the solid wastes, and the presence of appropriate bioprocess parameters at optimum conditions. Extremophilic microbes, including thermophiles, acidophiles, alkaliphiles, and halophiles, are recognized as excellent biological agents for the efficient bioextraction of metals from industrial solid wastes due to their aptitude for survival under harsh bioleaching conditions. Therefore, this review provides insights into the employability of extremophilic microorganisms as a biofactory for the recovery of valuable metals from various industrial solid wastes. More so, it discusses the sustainability of the bioleaching technique in terms of its life cycle assessment (LCA) and techno-economic analysis. Full article