Search Results (21)

Catsharks are benthic elasmobranchs that share spatial niches with littoral and demersal bony fishes. The genus Schroederichthys includes five species, two of which, S. chilensis and S. bivius, occur in the waters of Chile. These species are morphologically similar and are often misidentified because of their overlapping external features and color patterns. To improve species discrimination, we analyzed the egg case morphology of both species based on 36 egg cases (12 S. chilensis, 24 S. bivius) collected from gravid females captured as bycatch in artisanal fisheries between Iquique and Puerto Montt (July–December 2021). Nine morphometric variables were measured and standardized using the total egg case length. Although the egg cases were similar in general appearance, multivariate analyses revealed significant interspecific differences, with egg case height and anterior border width emerging as the most diagnostic variables. Linear discriminant analysis achieved a 100% classification accuracy within this dataset. To confirm species identity, 24 tissue samples (12 per species) were sequenced for the mitochondrial cytochrome c oxidase subunit I (COI) gene. The haplotypes corresponded to previously published sequences from Chile (S. chilensis) and Argentina (S. bivius), with reciprocal monophyly and 100% bootstrap support. While COI barcoding provided robust confirmation, the core contribution of this study lies in the identification of species-specific egg case morphometrics. Together, these findings establish a dual-track toolkit, egg case morphology for primary discrimination and COI barcodes for confirmatory validation, that can be incorporated into bycatch monitoring and biodiversity assessments, supporting the conservation of poorly known catsharks in the Southeast Pacific. Full article

The combined effects of anthropogenic activities and climate change, particularly the increasing frequency of extreme rainfall events, continue to pose significant threats to the security of reservoir ecosystems and water quality. Effective prediction and management of aquatic ecosystems require a comprehensive understanding of how environmental factors influence the dynamics of phytoplankton communities. However, the response patterns of phytoplankton community diversity, niche breadth, and cell density to rainfall disturbances in complex mountainous riverine reservoirs remain poorly understood. In this study, we systematically investigated the phytoplankton community structure and its environmental drivers in Zhaoshandu Reservoir (China) via field surveys, morphological identification of samples, and multivariate statistical analyses. Water temperature (WT), rainfall, and phytoplankton cell density in the study area ranged from 11.4 °C to 35.6 °C, from 0 to 72.5 mm, and from 3.33 × 10³ to 7.95 × 10⁷ cells/L, respectively. Total phosphorus and total nitrogen concentrations ranged from 0.002 to 0.633 mg/L and from 0.201 to 5.06 mg/L, respectively. Canonical correspondence analysis found that rainfall and WT were the pivotal drivers of phytoplankton density and biomass and were significantly correlated with phytoplankton diversity. Importantly, structural equation modeling revealed that the direct effects of both rainfall and WT on phytoplankton diversity and niche width, as well as the indirect effects of rainfall on ammonium nitrogen concentration, significantly modulated algal density and biomass in Zhaoshandu Reservoir. Our study highlights the role of rainfall as a potential major regulator of phytoplankton communities in this riverine reservoir. Full article

In this study, gravlax, a niche Scandinavian delicacy, was comprehensively investigated by producing it with combinations of two different fish species (tub gurnard (Chelidonichthys lucerna Linnaeus, 1758) and garfish (Belone belone Linnaeus, 1761)) and five herbs (dill (Anethum graveolens Linnaeus, 1753), sage (Salvia officinalis Linnaeus, 1753), mint (Mentha piperita Linnaeus, 1753), sweet (Ocimum basilicum Linnaeus, 1754), and purple basil (Ocimum basilicum var. purpurascens Bentham, 1830)). The nutritional composition, amino acids, color parameters, mineral substances, and heavy metal content, as well as physical characteristics, texture profile analysis, and extensive sensory analyses, were conducted, and the results were thoroughly evaluated using multivariate statistical methods. The influence of using different herbs on nutritional composition was found to be significant in gravlax made from both fish species (p < 0.05). Sensory analyses revealed that panelists identified mint as enhancing aroma and umami sensations, while dill improved overall acceptance. Gravlax with sage exhibited softer textures, but lower general acceptance due to perceived high saltiness. Color analyses revealed that purple basil transferred distinct pigments, causing darkening, whereas sweet basil had a brightening effect. Amino acid analyses revealed higher umami and sweet-tasting amino acids in herb-free gravlax, whereas proteolytic activity appeared to slow down in herb-containing gravlax samples. Full article

Nitrous oxide (N₂O) emissions from paddy soils significantly contribute to global warming; however, the regulatory mechanisms of microbial denitrification remain poorly understood. This study investigated the biotic and abiotic drivers of N₂O production and reduction across seven paddy soils spanning China’s major rice-growing regions, using integrated qPCR, incubation experiments, and multivariate analyses. Results demonstrated niche partitioning among denitrifying microorganisms. Pearson correlation analysis demonstrated significant positive correlations between potential N₂O production rates and the abundances of denitrification genes (nirS, nirK, and fungal nirK), as well as between N₂O reduction rates and nosZ gene abundances (both clade I and II). Key soil chemical properties, including pH, total carbon (TC), and NH₄⁺-N content, showed significant relationships with both potential N₂O production rates and reduction rates. Furthermore, random forest analysis identified nirS, fungal nirK, TC, and pH as key predictors of N₂O production, while nosZ (clade I and II), TC, and pH governed N₂O reduction. Structural equation modeling revealed that nirS-type bacteria predominantly drove N₂O production, whereas nosZ II-encoded microorganisms primarily mediated N₂O reduction. Moreover, TC exhibited direct positive effects on both processes, while pH indirectly influenced N₂O production by regulating nirS abundance and affected reduction via nosZ Ⅱ modulation. These findings provide a mechanistic framework for mitigating agricultural denitrification-derived N₂O emissions through a targeted management of soil carbon and pH conditions to optimize complete denitrification. Full article

Water quality and aquatic ecosystems along lakeshores are vital for ecological balance and human well-being. However, research has primarily focused on plankton, with benthic niches being largely overlooked. To enhance understanding of benthic microbial communities, we utilized 16S and 18S rRNA sequencing alongside multivariate statistical methods to analyze samples from the shoreline of Lake Taihu in Huzhou City, Zhejiang Province. Our results reveal a marked difference in species composition between benthic and planktonic microorganisms, with benthic cyanobacteria predominantly comprising filamentous genera like Tychonema, while 95% of planktonic cyanobacteria were Cyanobium. The β-diversity of benthic microorganisms was notably higher than that of planktonic counterparts. The neutral community model indicated that stochastic processes dominated planktonic microbial assembly, while deterministic processes prevailed in benthic communities. Null models showed that homogeneous selection influenced benthic community assembly, whereas planktonic communities were affected by undominated processes and dispersal limitation. Network analysis indicated that planktonic networks were more stable than benthic networks. Importantly, dominant benthic cyanobacterial genera posed potential toxin risks, highlighting the need for enhanced monitoring and ecological risk assessment. Overall, these findings enhance our understanding of benthic and planktonic microbial communities in lakeshores and offer valuable insights for aquatic assessment and management in eutrophicated environments. Full article

Organic farming encourages soil management practices that can improve soil health and fertility by increasing soil organic matter inputs and system sustainability. This study evaluated the effect of three years of continuous organic farming and intercropping orchard treatments on soil microbial diversity, microbial enumeration, respiration, soil fertility and fruit yields. Organic management resulted in higher soil organic matter content, Olsen P, and water holding capacity, but did not affect soil pH, electrical conductivity (EC), K, or Na levels. Growth parameters measured on all fruit trees were not significantly different among treatments. The enumeration of bacteria was significantly higher in organic plots when compared to conventionally managed plots. Soil respiration and substrate-induced respiration were significantly higher in the organic diverse plots in comparison to both conventional systems. The genomic analysis of prokaryotes (16S rRNA) and eukaryotes/fungi (ITS) revealed a significantly higher number of taxa, Shannon H index, and Equitability index in the organic systems for both prokaryotes and eukaryotes, in comparison to conventional farming, all of which are indicators of system sustainability. The relative abundance of Operational Taxonomic Units (OTUs) previously reported as diazotrophs, denitrifiers, or involved in the sulfur cycle, as well as Arbuscular Mychorrizae Fungi (AMF)/glomeromycotan, were highest in the organically managed soils than in the conventional plots. A multivariate correlation network clustering revealed that the microbial communities within the organic and conventional soils had strong dissimilarities regarding soil microbial niches. Our work provides evidence that organic management can be used for increasing soil microbial diversity and soil health, leading to higher levels of sustainability in fruit orchard systems. Full article

So far, the cellular origin of glioblastoma (GBM) needs to be determined, with prevalent theories suggesting emergence from transformed endogenous stem cells. Adult neurogenesis primarily occurs in two brain regions: the subventricular zone (SVZ) and the subgranular zone (SGZ) of the hippocampal dentate gyrus. Whether the proximity of GBM to these neurogenic niches affects patient outcome remains uncertain. Previous studies often rely on subjective assessments, limiting the reliability of those results. In this study, we assessed the impact of GBM’s relationship with the cortex, SVZ and SGZ on clinical variables using fully automated segmentation methods. In 177 glioblastoma patients, we calculated optimal cutpoints of minimal distances to the SVZ and SGZ to distinguish poor from favorable survival. The impact of tumor contact with neurogenic zones on clinical parameters, such as overall survival, multifocality, MGMT promotor methylation, Ki-67 and KPS score was also examined by multivariable regression analysis, chi-square test and Mann–Whitney-U. The analysis confirmed shorter survival in tumors contacting the SVZ with an optimal cutpoint of 14 mm distance to the SVZ, separating poor from more favorable survival. In contrast, tumor contact with the SGZ did not negatively affect survival. We did not find significant correlations with multifocality or MGMT promotor methylation in tumors contacting the SVZ, as previous studies discussed. These findings suggest that the spatial relationship between GBM and neurogenic niches needs to be assessed differently. Objective measurements disprove prior assumptions, warranting further research on this topic. Full article

The introduction and expansion of the Asian yellow-legged hornet (Vespa velutina nigrithorax) in Europe poses concern for multiple reasons, including biodiversity conservation. In addition to the predation of native insects (e.g., bees and wasps), this species may compete with native hornets due to an overlap of their climatic and trophic niches. The aim of this study is to investigate the realised climatic niche of V. v. nigrithorax and its response to climatic conditions and to evaluate the degree of overlap with the niches of the two native Vespa species present in Europe, Vespa crabro and Vespa orientalis. The niches of both native species partially overlap with the niche of the invasive species (Schoener’s D, 0.43 for V. crabro and 0.28 for V. orientalis), although some differences can be detected. V. crabro appears to be more adapted to cold and dry conditions than the invasive species, and V. orientalis is more adapted to arid climates. These differences may provide a competitive advantage to both native species in areas with a lower environmental suitability for V. v. nigrithorax, in the probable event that this species continues to spread, reaching all areas predicted to be suitable in Europe and in the Mediterranean basin. Full article

Phenotypic plasticity can favor the emergence of different morphotypes specialized in specific ranges of environmental conditions. The existence of intraspecific partitioning confers resilience at the species scale and can ultimately determine species survival in a context of global changes. Amblystogenium pacificum is a carabid beetle endemic to the sub-Antarctic Crozet Islands, and it has two distinctive morphotypes based on body coloration. For this study, A. pacificum specimens of functional niches were sampled along an altitudinal gradient (as a proxy for temperature), and some morphological and biochemical traits were measured. We used an FAMD multivariate analysis and linear mixed-effects models to test whether these traits were related to morphotype, altitude, and sexual dimorphism. We then calculated and compared the functional niches at different altitudes and tested for niche partitioning through a hypervolume approach. We found a positive hump-shaped correlation between altitude and body size as well as higher protein and sugar reserves in females than in males. Our functional hypervolume results suggest that the main driver of niche partitioning along the altitudinal gradient is body size rather than morphotype or sex, even though darker morphotypes tended to be more functionally constrained at higher altitudes and females showed limited trait variations at the highest altitude. Full article

Xanthium strumarium L. is a globally successful invasive herb that has had significant negative ecological, economic and social impacts in many world regions. The present study was therefore conducted to evaluate the invasive potential and spatial distribution patterns of X. strumarium in heavily invaded plant communities of the semiarid regions of northern Pakistan. Investigations were based on data from 20 plants grown in the Herbarium at the University of Malakand, and from observations in 450 plots distributed across 45 stands representing habitats across Northern Province including open fields, hillocks and abandoned areas in both urban and rural areas. Multivariate analysis identified elevation, organic matter and organic carbon as the environmental variables most associated with communities invaded by X. strumarium. Increased soil silt was positively associated and available water was negatively associated with X. strumarium–invaded communities. These key environmental characteristics allowed us to identify four main associations: Group I: X. strumarium-C. sativa, Group II: X. strumarium-P. hysterophorus, Group III: X. strumarium-A. aspera and Group IV: X. strumarium-C. sativa. Other invasive species were observed, either exotic, such as P. hysterophorus, or indigenous, such as C. sativa and D. inoxia, often co-occurring and responding similarly to these factors. The results suggest that high temperature with drought stress could be a determinant of increasing population at lower elevations, whereas colder climates with adequate moisture are related to reduced populations at higher elevations, near the species’ upper range limits. It is recommend that the inclusion of appropriate, additional soil and climatic variables in species distribution models be implemented in order to better explain species’ ecological niches and help guide conservation and protection plans for native plant communities. Full article

In the present study, the cytotoxic effects of 5-azacytidine on primary Oral Squamous Cell Carcinoma cells (OSCCs) from human biopsies, and on Cancer Stem Cells (CSCs) from the same samples, were investigated by an in vitro Fourier Transform InfraRed Microscospectroscopy (FTIRM) approach coupled with multivariate analysis. OSCC is an aggressive tumoral lesion of the epithelium, accounting for ~90% of all oral cancers. It is usually diagnosed in advanced stages, and this causes a poor prognosis with low success rates of surgical, as well as radiation and chemotherapy treatments. OSCC is frequently characterised by recurrence after chemotherapy and by the development of a refractoriness to some employed drugs, which is probably ascribable to the presence of CSCs niches, responsible for cancer growth, chemoresistance and metastasis. The spectral information from FTIRM was correlated with the outcomes of cytotoxicity tests and image-based cytometry, and specific spectral signatures attributable to 5-azacytidine treatment were identified, allowing us to hypothesise the demethylation of DNA and, hence, an increase in the transcriptional activity, together with a conformational transition of DNA, and a triggering of cell death by an apoptosis mechanism. Moreover, a different mechanism of action between OSSC and CSC cells was highlighted, probably due to possible differences between OSCCs and CSCs response. Full article

Neotropical montane forests are considered biodiversity hotspots, where epiphytic bryophytes are an important component of the diversity, biomass and functioning of these ecosystems. We evaluated the richness and composition of bryophytes in secondary successional forests and mixed plantations of Juglans neotropica. In each forest type, the presence and cover of epiphytic bryophytes was registered in 400 quadrats of 20 cm × 30 cm. We analyzed the effects of canopy openness, diameter at breast height (DBH) and forest type on bryophyte richness, using a generalized linear model (GLM), as well as the changes in species composition using multivariate analysis. Fifty-five bryophyte species were recorded, of which 42 species were in secondary forests and 40 were in mixed plantations. Bryophyte richness did not change at forest level; however, at tree level, richness was higher in the mixed plantation of J. neotropica compared to the secondary forests, due to the presence of species adapted to high light conditions. On the other hand, bryophyte communities were negatively affected by the more open canopy in the mixed plantation of J. neotropica, species adapted to more humid conditions being less abundant. We conclude that species with narrow microclimatic niches are threatened by deforestation, and J. neotropica plantations do not act as refuge for drought-sensitive forest species present in secondary forests. Full article

This study assesses the effects of environmental traits and landscape management on the biodiversity of saproxylic beetles from “dehesas” located in Sierra Morena Mountains (Córdoba, Southern Iberian Peninsula). The dehesa is an open savanna-like landscape with mature/old trees scattered on a pasture cover where both living and dead wood are of great importance for the maintenance of macroinvertebrate fauna. The study was carried out in five plots, with different environmental features and management. A total of 137 branches belonging to the four main tree species present in the area were collected, classified, and kept under four different thermal conditions. From January to June 2019, the adult emergences were followed. A total of 466 saproxylic specimens of 31 species were obtained, 5 of them included in red lists of protected fauna. Two Bostrichidae species (Lichenophanes numida Lesne and Scobicia pustulata Fab.) and two Cerambycidae (Chlorophorus ruficornis Oliv. and Trichoferus fasciculatus Faldermann) are included in the “European Red List of Saproxylic Beetles”; and the Clerid Tillus ibericus Bahillo de la Puebla, López–Colón and García–Paris, is included in the “Red Book of Invertebrate of Andalucía”. Differences were observed regarding the diversity and abundance among the plots and among the tree species from which the beetles emerged. Simple regression analyses revealed negative relationships between tree density/Buprestidae, livestock/Bostrichidae, and land use/Cerambycidae. Multivariant logistic regression analysis did not find significant relationships among environmental traits and saproxylic diversity. Results confirmed that dry wood was a main resource for the maintenance dehesas’ biodiversity because it constitutes an ecological niche exploited by a significant set of saproxylic beetles belonging to the Bostrichidae, Buprestidae, and Cerambycidae families, in addition to other guilds of species, mainly Carabidae and Cleridae, which feed on the above-mentioned groups. Our results also support that increasing environmental temperature accelerates the development of Buprestidae, but this effect was not evident for the Bostrichidae species. Full article

The general hypothesis that the overall presence or absence of one or more species in an extreme habitat is determined by physico-chemical factors was investigated using epikarst copepod communities as a model system, an example of an extreme environment with specialized, often rare species. The relationship between the presence or absence of epikarst copepods from drips in six Slovenian caves and 12 physico-chemical factors (temperature, conductivity, pH, Ca²⁺, Na⁺, K⁺, Mg²⁺, NH₄⁺, and Cl⁻, NO₂⁻, NO₃⁻, and SO₄²⁻) was explored. Statistical analyses included principal components analysis, logistic mixed models, stepwise logistic multivariate regression, classification trees, and random forests. Parametric statistical analyses demonstrated the overall importance of two variables—temperature and conductivity. The more flexible statistical approaches, namely categorical trees and random forests, indicate that temperature and concentrations of Ca²⁺ and Mg²⁺ were important. This may be because they are essential nutrients or, at least in the case of Ca²⁺, its importance in molting. The correlation of Cl⁻ and NO₃⁻ with copepod abundance may be due to unmeasured variables that vary at the scale of individual cave, but in any case, the values have an anthropogenic component. This contrasts with factors important in individual species’ niche separation, which overlap with the community parameters only for NO₃⁻. Full article

The microbial communities that inhabit lithic niches inside sandstone in the Antarctic McMurdo Dry Valleys of life’s limits on Earth. The cryptoendolithic communities survive in these ice-free areas that have the lowest temperatures on Earth coupled with strong thermal fluctuations, extreme aridity, oligotrophy and high levels of solar and UV radiation. In this study, based on DNA metabarcoding, targeting the fungal Internal Transcribed Spacer region 1 (ITS1) and multivariate statistical analyses, we supply the first comprehensive overview onto the fungal diversity and composition of these communities sampled over a broad geographic area of the Antarctic hyper-arid cold desert. Six locations with surfaces that experience variable sun exposure were sampled to compare communities from a common area across a gradient of environmental pressure. The Operational Taxonomic Units (OTUs) identified were primarily members of the Ascomycota phylum, comprised mostly of the Lecanoromycetes and Dothideomycetes classes. The fungal species Friedmanniomyces endolithicus, endemic to Antarctica, was found to be a marker species to the harshest conditions occurring in the shady, south exposed rock surfaces. Analysis of community composition showed that sun exposure was an environmental property that explained community diversity and structured endolithic colonization. Full article