Search Results (25)

Traditional morphometric analysis of Large Yellow Croaker (Larimichthys crocea) relies heavily on manual dissection, which is time-consuming, labor-intensive, and prone to subjectivity. To address these limitations, we propose an automated quantitative approach based on deep-learning–driven instance segmentation. A dataset comprising 160 X-ray images of L. crocea was established, encompassing five anatomical categories: whole fish, air bladder, spine, eyes, and otoliths. Building upon the baseline YOLOv11-Seg model, we integrated a lightweight Convolutional Block Attention Module (CBAM) to construct an improved YOLOv11-CBAM network, thereby enhancing segmentation accuracy for complex backgrounds and fine-grained targets. Experimental results demonstrated that the modified model achieved superior performance in both mAP50 and mAP50–95 compared with the baseline, with particularly notable improvements in the segmentation of small-scale structures such as the air bladder and spine. By introducing coin-based calibration, pixel counts were converted into absolute areas and relative proportions. The measured area ratios of the air bladder, otoliths, eyes, and spine were 7.72%, 0.59%, 2.20%, and 8.48%, respectively, with standard deviations remaining within acceptable ranges, thus validating the robustness of the proposed method. Collectively, this study establishes a standardized, efficient, and non-destructive workflow for X-ray image-based morphometric analysis, providing practical applications for aquaculture management, germplasm conservation, and fundamental biological research. Full article

Recent advances in passive acoustic monitoring (PAM) have markedly improved the ability to study marine soundscapes by enabling long-term, non-invasive monitoring of biological sounds across large spatial and temporal scales. Among aquatic organisms, fish are primary contributors to biophony, producing sounds associated with feeding, reproduction, and social behavior. However, the majority of previous research has focused on individual vocalizations, with limited attention to collective acoustic phenomena such as fish choruses. This study quantitatively analyzes choruses produced by the small yellow croaker (Larimichthys polyactis), an ecologically and commercially important species in the Northwest Pacific Ocean. Using power spectral density (PSD) analysis, we examined long-term underwater recordings from a sea cage containing approximately 2000 adult small yellow croakers. The choruses were centered around ~600 Hz and exhibited sound pressure levels 15–20 dB higher at night than during the day. These findings highlight the ecological relevance of fish choruses and support their potential use as indicators of biological activity. This study lays the foundation for incorporating fish choruses into soundscape-based PAM frameworks to enhance biodiversity and habitat monitoring. Full article

The small yellow croaker (Larimichthys polyactis), a migratory estuarine-demersal fish critical to East Asian fisheries, has faced severe population declines because of anthropogenic pressures (e.g., overfishing and anthropogenic habitat modification) and shifting environmental conditions. This study investigates its spatio-temporal habitat dynamics in Hangzhou Bay (2017–2023) using fisheries surveys and species distribution models (SDMs), with insights applicable to Pacific Coast migratory fish conservation. We evaluated the performance of eleven modeling algorithms to identify the most accurate model for predicting small yellow croaker distributions. Our results showed that the random forest algorithm outperformed other models, with a high sensitivity (95.238) and specificity (99.49), demonstrating its ability to capture complex non-linear relationships between environmental factors and species distribution. Depth emerged as the most influential factor, accounting for 30% of the importance in the model, with small yellow croakers preferring deeper waters around 60 m. Salinity was the second most important factor, with higher occurrence probabilities in areas where salinity exceeded 25 PSU. Other environmental factors, such as temperature and dissolved oxygen, had relatively smaller impacts on distribution. Spatially, small yellow croakers were predominantly distributed in offshore regions east of 122.5° E, where deeper waters and higher salinity levels provided suitable habitat conditions. This study underscores the need for targeted management measures, such as habitat restoration, to ensure the sustainable management of small-bodied yellow croaker populations. Full article

High oil content in breaded fried small yellow croaker (BFYC) was reduced using composite batter gels consisting of tapioca starch, wheat flour, and different concentrations of cassia gum (CG; 0%, 0.2%, 0.4%, 0.6%, 0.8%, 1%). The effects of CG on the oil absorption capacity of BFYC and potential mechanisms were investigated. Dynamic rheological analysis revealed that CG addition could enhance the viscoelasticity of the batter by increasing its storage modulus and loss modulus. Furthermore, FTIR and X-ray diffraction results demonstrated that CG interacts with starch through noncovalent interactions, increasing the relative crystallinity from 9.29% to 16.49%, which promoted the formation of a gel layer. This structural improvement effectively inhibited oil absorption. Differential scanning calorimetry analysis showed that within the 0–0.8% CG range, the batter’s denaturation temperature increased from 78.23 °C to 82.08 °C with higher CG concentrations, indicating prolonged gelatinization and enhanced thermal stability that further reduced oil penetration. Low-field nuclear magnetic resonance analysis revealed that CG increased the proportion of tightly bound and weakly bound water in the batter, thereby improving water retention capacity and reducing moisture loss during frying. Microscopic structural observations and Sudan Red-staining tests confirmed that at 0.8% CG concentration, the crust exhibited the lowest porosity with approximately 40% reduction in surface fat content compared to the control group. In conclusion, CG addition significantly improves batter properties and reduces oil content in fried products, providing theoretical support for the development of low-fat fried foods. Full article

In this study, we compared the genetic diversity and structure of small yellow croaker (Larimichthys polyactis, LP), large yellow croaker (Larimichthys crocea, LC), and their reciprocal hybrids (LP ♀ × LC ♂ (LCP) and LC ♀ × LP ♂ (LPC)) using 14 microsatellite loci. Our results revealed that genetic diversity was highest in LCP, followed by LP and LPC, with LC exhibiting the lowest level. Additionally, among the two hybrid progenies, the number of loci in LCP deviating from Hardy–Weinberg equilibrium was lower. This suggests that LCP is a more appropriate choice as breeding material and has the potential to enhance germplasm resources. Based on the analysis of 14 microsatellite loci, we observed that both hybrid species clustered with their respective maternal parents. Specifically, LPC exhibited a closer genetic relationship to its maternal parent than LCP did. Furthermore, the majority of genes in LPC were inherited from its maternal parent (LP). In the LCP population, approximately 63% of individuals possessed gene profiles similar to those observed in LPC, while the remaining individuals displayed a mix from both parents. This study provides a strategic direction for the efficient utilization and management of novel germplasm resources in hybrid yellow croaker. Hybrid yellow croaker serves as an intermediate breeding material, playing a significant role in the genetic improvement of Larimichthys crocea and Larimichthys polyactis. Full article

In order to understand the diel vertical migration and transport pattern during their early life stages, the vertical distribution of larvae and juveniles of the small yellow croaker (Larimichthys polyactis) in the Yangtze River estuary was investigated. Four sampling cycles were carried out at the station (122°39′ E, 31° N) during May and June 2015. The samples were collected by vertically discrete plankton hauls in three strata of the water column: surface (0~2 m depth), middle (8~10 m depth), and bottom (18~20 m depth). The total number of small yellow croaker larvae was 5523, of which 65.2% and 25.8% were postflexion larvae and juveniles, respectively. Most of the individuals were collected in mid-May, and the sum of the quantity in May accounted for 94.8%. In all cruises, the highest abundance occurred at the bottom, while the surface maintained the lowest abundance. The flexion larvae, postflexion larvae and juveniles moved up to the surface and middle at night, but there was no significant difference between night and daytime for preflexion larvae in each stratum. The postflexion larvae and juveniles showed low temperature responses and a preference for the bottom habitat, respectively, while the preflexion and flexion larvae had weaker selectivity to the water layer and occurrence time. The abundance of larvae and juveniles in the middle layer was significantly higher at flood tide than at ebb tide, and it was more dominant at night than during the day. The study indicates that larvae and juveniles of the small yellow croaker change their located depth with diel vertical migration and utilize the faster speed of the mid-upper layer, which contributes to their ingress into the Yangtze River estuary nursery ground. Full article

High temperatures present considerable challenges to global fish growth and production, yet the genetic basis of heat tolerance remains underexplored. This study combines quantitative trait locus (QTL) mapping and genome-wide association studies (GWAS) to examine the genetics of heat tolerance in Larimichthys polyactis. As a result, a genetic linkage map was constructed with 3237 bin markers spanning 24 linkage groups and totaling 1900.84 centimorgans, using genotyping-by-sequencing of a full-sib family comprising 120 progeny and their two parents. Based on this genetic linkage map, QTL mapping identified four QTLs associated with heat tolerance, which encompassed 18 single nucleotide polymorphisms and harbored 648 genes within the QTL intervals. The GWAS further disclosed 76 candidate genes related to heat tolerance, 56 of which overlapped with the QTL results. Enrichment analysis indicated that these genes are involved in immune response, development, lipid metabolism, and endocrine regulation. qPCR validation of 14 prioritized genes, which were simultaneously enriched in Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathways, confirmed significant upregulation of smpd5, polr3d, rab11fip2, and gfpt1, along with downregulation of gpat4 and grk5 after 6 h of heat stress. These findings demonstrate their responsiveness to elevated high temperatures. This meta-analysis of QTL mapping and GWAS has successfully identified functional genes related to heat tolerance, enhancing understanding of the genetic architecture underlying this critical trait in L. polyactis. It also provides a molecular breeding tool to improve genetic traits associated with heat tolerance in cultured L. polyactis. Full article

The problem of marine noise pollution has a long history. Strong noise (>120 dB re 1 µPa) will affects the growth, development, physiological responses, and behaviors of fish, and also can induce the stress response, posing a mortal threat. Although many studies have reported that underwater noise may affect the survival of fish by disturbing their nervous system and endocrine system, the underlying causes of death due to noise stimulation remain unknown. Therefore, in this study, we used the underwater noise stress models to conduct underwater strong noise (50–125 dB re 1 µPa, 10–22,000 Hz) stress experiments on small yellow croaker for 10 min (short-term noise stress) and 6 days (long-term noise stress). A total of 150 fishes (body weight: 40–60 g; body length: 12–14 cm) were used in this study. Omics (metabolomics and transcriptomics) studies and quantitative analyses of important genes (HPA (hypothalamic–pituitary–adrenal)-axis functional genes) were performed to reveal genetic and metabolic changes in the important tissues associated with the HPA axis (brain, heart, and adrenal gland). Finally, we found that the strong noise pollution can significantly interfere with the expression of HPA-axis functional genes (including corticotropin releasing hormone (CRH), corticotropin releasing hormone receptor 2 (CRHR2), and arginine vasotocin (AVT)), and long-term stimulation can further induce metabolic disorders of the functional tissues (brain, heart, and adrenal gland), posing a lethal threat. Meanwhile, we also found that there were two kinds of death processes, direct death and chronic death, and both were closely related to the duration of stimulation and the regulation of the HPA axis. Full article

In recent decades, China’s large-scale stock enhancement programs to restore the collapsing large yellow croaker (Larimichthys crocea) fishery resources have not yielded the desired results, and a comprehensive analysis of the underlying reasons for this problem is required. Based on small yellow croaker (Larimichthys polyactis) catch survey data obtained from 15 fishing ports along the coast of the East China Sea, we examined the proportion of large yellow croakers mixed in the small yellow croaker catch and their biological parameters. In addition, we analyzed the differences in the intestinal microbiota and feeding ecology between these two species to explore the reason why the stock enhancement program failed to achieve the desired outcome. The results show that there is a high likelihood of the two species appearing in each other’s ecological niches, and there is a significant overlap in their dietary ecology. They may cohabitate and form a guild. The fishing season targeting the small yellow croaker indirectly catches the large yellow croaker population, which puts huge fishing pressure on large yellow croaker resource and shows obvious overfishing. Therefore, it is necessary to optimize and adjust the fishing ban policy and stock enhancement strategies, appropriately reducing the fishing intensity after the fishing ban to facilitate the effective accumulation of resource replenishment effects during the fishing ban period, thus effectively restoring wild large yellow croaker resources. Full article

Disease outbreaks in aquaculture have recently intensified. In particular, visceral white-nodules disease, caused by Pseudomonas plecoglossicida, has severely hindered the small yellow croaker (Larimichthys polyactis) aquaculture industry. However, research on this disease is limited. To address this gap, the present study employed a 100K SNP chip to genotype individuals from an F1 full-sib family, identify single nucleotide polymorphisms (SNPs), and construct a genetic linkage map for this species. A high-density genetic linkage map spanning a total length of 1395.72 cM with an average interval of 0.08 cM distributed across 24 linkage groups was obtained. Employing post-infection survival time as an indicator of disease resistance, 13 disease resistance-related quantitative trait loci (QTLs) were detected, and these regions included 169 genes. Functional enrichment analyses pinpointed 11 candidate disease resistance-related genes. RT-qPCR analysis revealed that the genes of chmp1a and arg1 are significantly differentially expressed in response to P. plecoglossicida infection in spleen and liver tissues, indicating their pivotal functions in disease resistance. In summary, in addition to successfully constructing a high-density genetic linkage map, this study reports the first QTL mapping for visceral white-nodules disease resistance. These results provide insight into the intricate molecular mechanisms underlying disease resistance in the small yellow croaker. Full article

Small yellow croaker (Larimichthys polyactis) is a critical economic fish species in South Korea, where effective management is essential due to concerns over declining populations. This study aims to enhance fishery management strategies by applying machine learning techniques to classify the maturity stages and estimate the length at first maturity (L50 and L95), comparing these results with those obtained using traditional macroscopic methods. Five machine learning models, including Decision Tree (DT), Random Forest (RF), LightGBM (LGBM), EXtreme Gradient Boosting (XGB) and Support Vector Machine (SVM), were developed and evaluated for their effectiveness in predicting maturity stages. The XGB model demonstrated superior performance with the highest evaluation final score and low computation time. Using generalized linear models (GLM), this study estimated L50 and L95 for both machine learning predictions and macroscopic observations. The results showed that machine learning models, particularly XGB, provided more precise estimates with narrower confidence intervals and better model fit than the traditional macroscopic methods. These findings can support more sustainable fisheries management practices by offering reliable tools for setting appropriate regulatory measures, such as minimum landing sizes, which contribute to the conservation of marine resources. Full article

The spatial niche has garnered significant attention in ecological research, particularly regarding species distribution patterns. The East China Sea, known for its favorable natural conditions and abundant fishery resources, exhibits diverse spatial distribution patterns among species, shaped by their seasonal physiological needs. This study utilized a habitat suitability index model to explore the spatial distribution patterns of key fishery resources in the East China Sea across four seasons and their interactions. Two methodologies were employed to identify key environmental factors and assess the ecological niche overlap among different species and seasons. Results indicated that the initial method identified water temperature as the critical factor for hairtail, while the subsequent method emphasized water temperature and salinity for hairtail, salinity for small yellow croaker, and water depth for Bombay duck. The main spatial habitat overlap was observed between paired species, likely driven by predator-prey interactions. During summer and autumn, increased overlap among multiple species was primarily influenced by synchronized life cycles. An overlap index formula quantified the seasonal species overlap, showing an increase from spring to winter, reflecting changes in convergent habitat preferences. The peak overlap occurred in winter, driven by overwintering, reduced food competition, and enhanced coexistence potential, while the lowest overlap was noted in spring as overwintering ended and predation and competition intensified. Full article

In fisheries’ stock assessments, the concept of “growth plasticity”—the ability of organisms to modulate their growth rates in response to environmental conditions—has gained attention in recent years. Historically, the impacts of fishing activities and environmental fluctuations were considered separately, while their combined effects have recently come into focus. This study collected 834 adult small yellow croakers (Larimichthys polyactis) from the northern Yellow Sea, the central Yellow Sea, the southern Yellow Sea, and the northern East Sea by trawling during 2020–2021. Using otolith increments as a proxy for annual somatic growth, the study reconstructed otolith chronologies during 2015–2020 for these four stocks. The results of the mixed-effects modeling suggested that temperature during spawning and previous overwintering seasons had comparable importance for the annual growth of small yellow croakers, with higher temperature promoting growth. The growth of small yellow croakers was also found to be correlated with ENSO events, with a lag of 1 to 2 years. A further investigation into combined effects revealed that higher fishing pressure might inhibit the small yellow croaker’s response to favorable environmental conditions. Furthermore, considering the potential differences in growth plasticity among stocks, an analysis was conducted on the spatial variations in growth response to these factors. The analysis revealed that, compared to the stocks in the Yellow Sea, the stock from the East China Sea could exhibit higher growth, superior adaptability to temperature, and a distinctive response to fishing pressure. In conclusion, the present study, while primarily focusing on temperature, preliminarily analyzed the combined effects of fishing and environment and underscored the differences in growth plasticity between stocks in the Yellow Sea and the East China Sea. Despite the limited factors analyzed in this study, it suggests a direction for future studies, highlighting the necessity to include more environmental factors, and even population factors (e.g., the biomass of preys), for a more comprehensive understanding of the combined effects. Based on the observed differences between the two potential subpopulations, this study also provides new insights for the management of the small yellow croaker based on metapopulation dynamics. Full article

(1) Background: The small yellow croaker, an economically important fish in East Asia, has been subjected to population declines due to overfishing and environmental pressures. The development of effective breeding programs is considered crucial for the species, and accurate parentage assignment is deemed essential for such programs. (2) Methods: The assembled reference genome of the small yellow croaker was utilized to select highly polymorphic microsatellite markers. A multiplex PCR system was optimized for the simultaneous amplification of these markers. The system’s accuracy was validated using controlled mating pairs and subsequently applied to a group mating scenario. (3) Results: The developed multiplex PCR system demonstrated high accuracy in assigning offspring to their parents in both the controlled and group mating scenarios. (4) Conclusions: The system is presented as a valuable tool for pedigree management, selective breeding, and conservation efforts for the small yellow croaker, facilitating sustainable aquaculture practices and genetic improvement. Full article

Nursery habitats play a significant role in completing fish life cycles, and they are now recognized as essential habitats. Monthly variations in nursery ground distributions of Larimichthys polyactis were investigated in the southern Yellow Sea in 2019. Bayesian hierarchical models with integrated nested Laplace approximation were utilized to model the preferential nursery habitats of L. polyactis larvae. The study analyzed the spatial and temporal distributions of the larvae and juveniles based on three environmental variables: sea surface temperature, sea surface salinity, and depth. Additionally, this study examined the utilization of habitats by different fish life stages and ontogenetic shifts. A total of 3240 individuals were collected from April to June, with the peak occurring in May (0.05 ind./m³), and the distribution areas varied between different months. The prediction of the model reveals the ecological adaptability of L. polyactis to temperature variations. The optimal temperature for L. polyactis density ranges from 12.5 °C to 16.5 °C in April and 16.5 °C to 17.5 °C in May, demonstrating a broad temperature tolerance for L. polyactis survival. In addition, there are variations in distribution patterns among different developmental stages. Larimichthys polyactis spawn in the inshore and nearshore waters, and after hatching, larvae in the pre-flexion stage tend to remain aggregated near the spawning beds. However, larvae in the advanced development stage (post-flexion) and juveniles move towards the sandy ridge habitats along the coast and start to migrate offshore in June. This study provides valuable insights for the effective management of fishery resources in the area and can be utilized to identify marine areas with specific habitat features that require conservation. Full article