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Volume 16, April
 
 

Diversity, Volume 16, Issue 5 (May 2024) – 21 articles

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16 pages, 2400 KiB  
Article
Impact of Silver Nanoparticles on Arbuscular Mycorrhizal Fungi and Glomalin-Related Soil Proteins in the Rhizosphere of Maize Seedlings
by Haiying Zhao, Zhiyuan Liu, Yu Han and Jiling Cao
Diversity 2024, 16(5), 273; https://doi.org/10.3390/d16050273 - 02 May 2024
Viewed by 232
Abstract
Glomalin-related soil protein (GRSP), an important arbuscular mycorrhizal (AM) fungal by-product, plays a key role in preserving or sequestrating soil organic carbon (C). Silver nanoparticles (AgNPs) have become an emerging contaminant and their impacts on soil ecosystems attract increasing concerns. The dynamics of [...] Read more.
Glomalin-related soil protein (GRSP), an important arbuscular mycorrhizal (AM) fungal by-product, plays a key role in preserving or sequestrating soil organic carbon (C). Silver nanoparticles (AgNPs) have become an emerging contaminant and their impacts on soil ecosystems attract increasing concerns. The dynamics of AM fungi and GRSP could therefore form the basis for an in-depth exploration of the influences of AgNPs on soil ecosystems. This study investigated the effects of AgNPs on mycorrhizal growth and AM fungal communities, as well as the GRSP contents in maize (Zea mays L.) soils, with a pot experiment. The contributions of GRSP to soil organic C and the correlations of GRSP with soil organic C were also evaluated. The results indicated that AgNPs decreased the mycorrhizal colonization, AM fungal biomass, and diversity indices, and strongly shifted the community composition of AM fungi with a reduction in Acaulosporaceae and an enrichment in Glomeraceae. Additionally, AgNPs also decreased the soil’s easily extractable (EE) GRSP and total (T) GRSP contents, resulting in lower contributions of EE-GRSP-C and T-GRSP-C to the soil organic C. Linkage analyses revealed that AM fungal abundances have positive correlations with EE- and T-GRSP, and EE- and T-GRSP also positively correlated with soil organic C, indicating that the negative effects of AgNPs on AM fungal abundances and communities were extended to AM-fungal-associated C processes. Altogether, our study found that AgNPs decreased the AM fungal abundances shaped AM fungal communities, and reduced the soil GRSP content, which might subsequently be unfavorable for soil C storage. Full article
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16 pages, 1749 KiB  
Article
Low Genetic and Parasite Diversity of Invasive Pumpkinseed Lepomis gibbosus (Centrarchidae) Expanding in Türkiye
by Yuriy Kvach, Maria Yu. Tkachenko, Daniela Giannetto, Robert Míč, Veronika Bartáková, Sevan Ağdamar, Gülşah Saç, Müfit Özuluğ, Ali Serhan Tarkan and Markéta Ondračková
Diversity 2024, 16(5), 272; https://doi.org/10.3390/d16050272 - 01 May 2024
Viewed by 289
Abstract
Multiple factors can facilitate invasion success, with the absence of natural enemies, such as predators and parasites, recognised as conferring a significant advantage on invasive over native species. Pumpkinseed Lepomis gibbosus (Centrarchidae) represents one of the most successful freshwater fish invaders in Europe. [...] Read more.
Multiple factors can facilitate invasion success, with the absence of natural enemies, such as predators and parasites, recognised as conferring a significant advantage on invasive over native species. Pumpkinseed Lepomis gibbosus (Centrarchidae) represents one of the most successful freshwater fish invaders in Europe. Previous research has highlighted genetic differences between pumpkinseed populations in Türkiye and those in other European regions, attributed to rapid adaptation to new environmental conditions. This study aimed to investigate whether these highly adapted pumpkinseed populations in Türkiye benefit from a potential release from parasites, as proposed by the enemy-release hypothesis. Genetic characterisation of pumpkinseed populations from both European and Asian parts of Türkiye revealed that they share the same cytochrome c oxidase I haplotype as European populations. Microsatellite analysis indicated low genetic diversity, with STRUCTURE analysis confirming the clustering of all Turkish populations, suggesting a common source. Consistent with the low genetic diversity indicative of a small founding population, we observed a limited number of co-introduced parasite species, including the myxozoan Myxobolus dechtiari, the monogenean Onchocleidus dispar, and the digenean Posthodiplostomum centrarchi. Parasite infection by local parasites acquired in Türkiye was rare. Parasite diversity, species richness, and equitability were low, with only nine parasite taxa identified in all four pumpkinseed populations. The most diverse parasite community was found in Değirmenköy Reservoir, located in the European part of Türkiye, where seven parasite taxa were identified. While our study did not uncover genetically distinct pumpkinseed populations in Türkiye, the fish demonstrated resilience against most local parasite species, potentially providing them with an advantage over native species, aligning with the enemy-release hypothesis. Full article
(This article belongs to the Special Issue Diversity, Taxonomy and Systematics of Fish Parasites)
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26 pages, 1708 KiB  
Article
Age Readings and Assessment in Coastal Batoid Elasmobranchs from Small-Scale Size-Selective Fishery: The Importance of Data Comparability in Multi-Specific Assemblages
by Umberto Scacco, Fabiana Zanardi, Silvio Kroha, Emanuele Mancini, Francesco Tiralongo and Giuseppe Nascetti
Diversity 2024, 16(5), 271; https://doi.org/10.3390/d16050271 - 30 Apr 2024
Viewed by 177
Abstract
The large variation in vertebral shape and calcification observed among elasmobranch species prevents using a single method for enhancing growth bands and reading age. Further, estimating age and growth parameters can be difficult or impractical when samples are incomplete due to the [...] Read more.
The large variation in vertebral shape and calcification observed among elasmobranch species prevents using a single method for enhancing growth bands and reading age. Further, estimating age and growth parameters can be difficult or impractical when samples are incomplete due to the bycatch of a size-selective fishery. Using a single and rapid method, age readings were obtained on the vertebrae of four batoid species, namely 53 individuals of Dasyatis pastinaca, 51 of Raja asterias, 15 of Torpedo marmorata, and 55 specimens of Torpedo torpedo, from the local small-scale trammel net fishery in the coastal waters (5–20 m depth) of the Central Tyrrhenian Sea during 2019–2021. Based on these data, a statistical routine was developed to obtain multiple estimates of age and growth parameters for incomplete samples due to size-selective fishing. The acceptable agreement between and within readers (intra and inter-reader disagreement < 5%) and the rate of increase in vertebral size with body size (differently ranked across species) demonstrated the consistency of the enhancing method. The parameters estimated by the Von Bertalanffy and Gompertz growth models matched the data available in the Mediterranean Sea for the species studied, with D. pastinaca, T. torpedo, and R. asterias showing the lowest (k = 0.05–0.12), intermediate (k = 0.112–0.19), and highest (k = 0.18–0.23) growth rates, respectively, in line with the life history traits of these species. Overall, the method proved effective both in delineating band pairs in vertebrae of different species and in reliably estimating the age and growth parameters of problematic samples due to size-selective fishing. The proposed method supports the collection of comparable demographic data from other areas where similar multi-specific assemblages are bycatch of size-selective fisheries impacting potential nursery areas and other essential habitats for elasmobranchs. Full article
(This article belongs to the Special Issue Diversity in 2024)
14 pages, 4674 KiB  
Article
The Potential of Artificial Snags to Promote Endangered Saproxylic Beetle Species in Bavarian Forests
by Tomáš Lackner, Birgit Reger, Cynthia Tobisch and Volker Zahner
Diversity 2024, 16(5), 270; https://doi.org/10.3390/d16050270 - 30 Apr 2024
Viewed by 487
Abstract
The creation of artificial snags, so-called high stumps, within forest management operations is a recently established tool to enrich standing deadwood as a habitat for saproxylic species. In this study, we analysed the impact of active high stump management on saproxylic beetle species. [...] Read more.
The creation of artificial snags, so-called high stumps, within forest management operations is a recently established tool to enrich standing deadwood as a habitat for saproxylic species. In this study, we analysed the impact of active high stump management on saproxylic beetle species. We selected 63 high stumps in six Bavarian forest districts (Germany), which were felled and subjected to close examination, focusing on beetle (Coleoptera) colonization. We identified 63 emerged coleopteran species belonging to 29 families; a further 10 taxa were identified only at the genus or family level, respectively. Moreover, 17% of the obtained taxa are listed in the German Red List of Coleoptera. Furthermore, 32% of the examined high stump trunks, predominantly broad-leaved tree species, harboured Red List beetle taxa. In particular, trembling aspen (Populus tremula) showed a disproportionately high number of Red List beetle species. The total species richness of beetles was independent of the height, diameter and decay stage of the snags. High stumps (snags) containing Red List beetle species tended to have higher amounts of deadwood in their surroundings, but the difference was not significant. According to the results of our study, actively creating high stumps proved to be a suitable method for creating habitats and serve as stepping-stones for endangered saproxylic species. Proactive high stump management during harvest can be a valuable component of deadwood management and biodiversity protection in forests. Full article
(This article belongs to the Special Issue Ecology and Management of Forest Insects in the Anthropocene)
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25 pages, 2149 KiB  
Article
Improving Aquatic Biodiversity Estimates in Africa: Rotifers of Angola and Ghana
by Radoslav Smolak, Patrick D. Brown, Robert N. Walsmith, Judith V. Ríos-Arana, Peter Sanful, Lukáš Kalous and Elizabeth J. Walsh
Diversity 2024, 16(5), 269; https://doi.org/10.3390/d16050269 - 30 Apr 2024
Viewed by 571
Abstract
Afrotropical inland waters are highly diverse ecosystems; however, they remain poorly studied, especially for rotifers. Here, we contributed to the knowledge of the rotifer species richness in the largely understudied African countries of Angola and Ghana. We assessed the roles of habitat type [...] Read more.
Afrotropical inland waters are highly diverse ecosystems; however, they remain poorly studied, especially for rotifers. Here, we contributed to the knowledge of the rotifer species richness in the largely understudied African countries of Angola and Ghana. We assessed the roles of habitat type and a suite of abiotic environmental factors in determining rotifer species richness of Ghana. A total of 37 sites (Ghana 32, Angola 5) in 19 water bodies from a variety of aquatic habitat types were sampled. In Ghana, we identified 118 taxa (105 species or subspecies level, 13 identified to genus). We identified 15 taxa (13 species) in the Angola samples. For Ghana, 100 of 118 (~85%) taxa were new records for the country, of which 13 species (~11%) were also new records for Africa. Nearly all the species (~93%) were new records for Angola. Species richness was positively correlated with conductivity and reservoir habitat type and negatively with pH. Redundancy analysis (RDA), conducted at the species level for the Ghana dataset, indicated suites of species associated with latitude, longitude, temperature, TDS, or pH. We also evaluated the effect of climate on species distribution in 27 African countries by conducting a review of all reports from Africa to determine factors associated with species richness. A Spearman’s correlation confirmed a significant positive correlation between the number of rotifer species and the number of climatic regions (R = 0.53, p < 0.001) for certain countries, based on species distributions in relation to Köppen–Geiger climate regions. This fact validates the environmental heterogeneity hypothesis for African rotifers. Lastly, we predicted that rotifer species richness in Ghana, as a country with a tropical climate, could approach ~190 taxa, while in climatically heterogeneous Angola we predict ~200 taxa. This study contributes to our knowledge of rotifer biogeography and species richness patterns in Africa. Full article
(This article belongs to the Special Issue Biodiversity of Rotifers-2nd Edition)
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15 pages, 2877 KiB  
Article
Growth and Genome Features of Non-O1/O139 Vibrio cholerae Isolated from Three Species of Common Freshwater Fish
by Xinchi Qin, Lianzhi Yang, Yingwei Xu, Lu Xie, Yongjie Wang and Lanming Chen
Diversity 2024, 16(5), 268; https://doi.org/10.3390/d16050268 - 30 Apr 2024
Viewed by 244
Abstract
Vibrio cholerae is the etiological agent of cholera in humans. The bacterium is frequently detected in aquatic products worldwide. However, the current literature on the genome evolution of V. cholerae of aquatic animal origins is limited. Here, we firstly characterized the growth and [...] Read more.
Vibrio cholerae is the etiological agent of cholera in humans. The bacterium is frequently detected in aquatic products worldwide. However, the current literature on the genome evolution of V. cholerae of aquatic animal origins is limited. Here, we firstly characterized the growth and genome features of V. cholerae isolates with different resistance phenotypes from three species of common freshwater fish. The results revealed that the non-O1/O139 V. cholerae isolates (n = 4) were halophilic and grew optimally at 2% NaCl and pH 8.0. Their draft genome sequences were 3.89 Mb–4.15 Mb with an average GC content of 47.35–47.63%. Approximately 3366–3561 genes were predicted to encode proteins, but 14.9–17.3% of them were of an unknown function. A number of strain-specific genes (n = 221–311) were found in the four V. cholerae isolates, 3 of which belonged to none of any of the known sequence types (STs). Several putative mobile genetic elements (MGEs) existed in the V. cholerae isolates, including genomic islands (n = 4–9), prophages (n = 0–3), integrons (n = 1–1), and insertion sequences (n = 0–3). Notably, CRISPR-Cas system arrays (n = 2–10) were found in the V. cholerae genomes, whereby the potential immunity defense system could be active. Comparative genomic analyses also revealed many putative virulence-associated genes (n = 106–122) and antibiotic resistance-related genes (n = 6–9). Overall, the results of this study demonstrate the bacterial broader-spectrum growth traits and fill prior gaps in the genomes of V. cholerae originating from freshwater fish. Full article
(This article belongs to the Special Issue Diversity, Occurrence and Distribution of Foodborne Pathogens)
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11 pages, 5854 KiB  
Article
The Taurus Mountains, the Hotspot of Western Palearctic Biodiversity, Is in Danger: Marble Quarries Affect Wildlife
by Tamer Albayrak and Tamer Yılmaz
Diversity 2024, 16(5), 267; https://doi.org/10.3390/d16050267 - 30 Apr 2024
Viewed by 265
Abstract
The Taurus Mountains in the Mediterranean Coastal Basin, considered a biodiversity hotspot, have a rich biodiversity in the Western Palearctic. The number of marble quarries in the Taurus Mountains has dramatically expanded over the past ten years. The objectives of this study are [...] Read more.
The Taurus Mountains in the Mediterranean Coastal Basin, considered a biodiversity hotspot, have a rich biodiversity in the Western Palearctic. The number of marble quarries in the Taurus Mountains has dramatically expanded over the past ten years. The objectives of this study are to (i) determine the impacts of quarrying on wildlife and (ii) determine the potential impacts of quarrying on the future of Taurus. A total of 57,547 photos and video images were analyzed on 5447 photo-trap days in two areas, the marble quarries and the control areas. Using 97 randomly selected marble quarries, the area they cover and their annual growth rates were determined. The most commonly seen animals were the wolf (Canis lupus), fox (Vulpes vulpes), lynx (Lynx lynx), and wild boar (Sus scrofa) in the control area, and the jackal (Canis aureus) and hare (Lepus europaeus) in the marble quarries (p < 0.001). Additionally, we found a significant positive correlation between the distance from the geographical center of the marble quarries and the number of dates of wolf, fox and wild boar sightings, with a significant negative correlation for hares (p < 0.05). A positive correlation was found between the area of marble quarries and the duration of operation (R = 0.89, p < 0.00). The waste from quarries, which makes up 79.7% of the total land used for this purpose, is the greatest cause of habitat degradation. According to calculations, even if no new marble quarries are built as of right now, 7.14% of the Taurus Mountains may have disappeared by the year 2027, and by the year 2032, 8.25% of the Taurus ecosystems may have disappeared completely. The Taurus Mountains, a center of Western Palearctic biodiversity, are being threatened by marble quarries. This study advances our knowledge of how marble quarries may affect wildlife. New strategies must be developed as soon as possible to protect the Taurus Mountains, the hotspot of the Mediterranean basin. Full article
(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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20 pages, 4458 KiB  
Article
Beyond the Beach: Multi-Parameter Interpretation of Shore Deterioration in a Caribbean Reef System
by Laura R. de Almeida, S. Valery Ávila-Mosqueda, Edgar Mendoza, Brigitta I. van Tussenbroek and Rodolfo Silva
Diversity 2024, 16(5), 266; https://doi.org/10.3390/d16050266 - 30 Apr 2024
Viewed by 296
Abstract
Throughout the Caribbean region, coastal areas are of vital importance for national incomes from the tourism industry. However, accelerated coastal development has impacted the coastal ecosystems, including the beaches, and deterioration of the shore results from cumulative impacts on both marine and coastal [...] Read more.
Throughout the Caribbean region, coastal areas are of vital importance for national incomes from the tourism industry. However, accelerated coastal development has impacted the coastal ecosystems, including the beaches, and deterioration of the shore results from cumulative impacts on both marine and coastal ecosystems. It is essential to identify the areas that need special attention for targeted management plans and actions, especially in areas with high anthropogenic pressure. This research proposes an integrated assessment of the conservation state of shore and coastal ecosystems in the Puerto Morelos National Reef Park (PNAPM) in the Mexican Caribbean, through the spatial monitoring of key parameters. A Geographic Information System (GIS) was employed to analyze the land use on the shore, foredune condition, morphological characteristics of the beaches, shoreline evolution, and the condition of coral reefs and seagrass meadows. The analysis identified the most critical areas in relation to shore deterioration and priority areas for the preservation of ecosystems. The spatial data obtained for the PNAPM can serve as a basis for ongoing shore monitoring, and targeted management actions through the designation of areas that require either preservation or ecosystem restoration practices. This methodology can be applied to other reef systems in the Caribbean. Full article
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12 pages, 13195 KiB  
Article
Gradient Analysis of Spatial-Temporal Change and Conservation Effectiveness in Different Ecological Protected Areas
by Peng Hou, Hanshou Zhu, Jun Zhai, Yan Chen, Diandian Jin, Yisheng Liu, Jiajun Zhao and Xifei Wang
Diversity 2024, 16(5), 265; https://doi.org/10.3390/d16050265 - 30 Apr 2024
Viewed by 285
Abstract
The protection of ecological systems is currently a trending topic. Numerous countries have implemented various measures to safeguard ecosystems. Evaluating the effectiveness of regional ecological protection and cooperative conservation is of paramount importance. In this paper, Hainan Island, China, was taken as an [...] Read more.
The protection of ecological systems is currently a trending topic. Numerous countries have implemented various measures to safeguard ecosystems. Evaluating the effectiveness of regional ecological protection and cooperative conservation is of paramount importance. In this paper, Hainan Island, China, was taken as an example to construct an evaluation framework of the ecosystem change characteristics and conservation effects of different types of protected areas. In this way, the study evaluated the ecological status of important protected areas and the effects of collaborative management and control, and it discussed the changes in ecological status and protection effects. The results revealed the following. (1) Important protected areas occupy a large proportion of natural ecological space, reaching 76.33%, more than twice the proportion of ecological space on Hainan Island. In the past 20 years, the ecological space retention rate has increased by 0.57%. (2) The contribution of excellent-quality and good-quality ecosystems is the greatest, accounting for 82.65% of the whole island. In the past 20 years, the ec7osystem quality has improved in more than 80% of the areas. The proportion of excellent-quality and good-quality ecosystems is as high as 96.75% in these conservation areas, and their contribution to Hainan Island is 44.29%, while conservation areas only account for about 38%. (3) The ecosystem services of Hainan Island have improved and become stable in the past 20 years. The contribution of all types of protected areas to the ecosystem services of Hainan Island is more than 53.22%. In general, the ecological quality and service function has increased in Hainan Island, and the ecological space tends to be stable. Different types of protected areas have effectively protected various ecosystems on Hainan Island with different protection and management mechanisms. Full article
(This article belongs to the Section Biodiversity Conservation)
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21 pages, 4452 KiB  
Article
Diversity of Cryptofaunal Nematode Assemblages along the Jardines de La Reina Coral Reef, Southern Cuba
by Diana Marzo-Pérez, Jose Andrés Pérez-García, Amy Apprill and Maickel Armenteros
Diversity 2024, 16(5), 264; https://doi.org/10.3390/d16050264 - 29 Apr 2024
Viewed by 302
Abstract
Cryptofaunal nematodes, those living on the hard substrate of the coral reefs, are largely unknown in terms of diversity and assemblage structure. We described nematode assemblages at seven sites spanning about 200 km along Jardines de La Reina, a well-preserved reef system in [...] Read more.
Cryptofaunal nematodes, those living on the hard substrate of the coral reefs, are largely unknown in terms of diversity and assemblage structure. We described nematode assemblages at seven sites spanning about 200 km along Jardines de La Reina, a well-preserved reef system in the Greater Antilles. We identified about 3000 nematodes, mostly of the families Desmodoridae and Chromadoridae; the most abundant species were Croconema cinctum, Desmodora communis, and Euchromadora vulgaris. The regional richness was moderate with 70 observed species (0.95 confidence interval: 65–75 species) and 75 extrapolated species (0.95 CI: 68–83 species). This richness was lower than in other reef biotopes, maybe reflecting evolutionary constraints due to interactions with stony corals. The local expected richness at 100 individuals was similar among sites, with a median of 26 species (0.95 CI: 20–34 species), and likely caused by diversification rate and evolutionary time acting at the same pace on populations. The taxonomic β-diversity was high and without differences among sites (median: 0.85; 0.95 CI: 0.33–1), probably due to significant substrate heterogeneity at 10-cm scale. The prevalence of replacement over richness difference suggests that local processes (e.g., environmental filtering and competition) contribute more to β-diversity than niche availability, which would be largely similar across the reef terraces. Contrary to our expectations, no gradient of assemblage structure occurred, nor significant effect of benthic cover on nematodes. However, nematode functional structure showed a conservative set of biological traits reflecting adaptations to hydrodynamic regime: armed oral cavity/intermediate colonizing capability/ornamented cuticles/conical tail. Our results provide insights about the taxonomic and functional diversity of nematodes and highlight the vast knowledge gaps about the processes ruling the meiofauna community structure in coral reefs. Full article
(This article belongs to the Special Issue Ecology and Paleoecology of Atlantic and Caribbean Coral Reefs)
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13 pages, 2499 KiB  
Article
Soil Moisture and Litter Coverage Drive the Altitude Gradient Pattern of Soil Arthropods in a Low-Elevation Mountain
by Haiming Qin, Jingwen Shang, Qin Qi, Bo Cao, Yong Kong, Yujian Li, Junfeng Chen and Xianfeng Yi
Diversity 2024, 16(5), 263; https://doi.org/10.3390/d16050263 - 27 Apr 2024
Viewed by 213
Abstract
This study sought to investigate the vertical distribution pattern of the soil faunal community in a low-altitude mountain area. On 8 July 2022, a low hill was selected as the study area, and soil arthropods were collected through traps. The leaf litter, vegetation [...] Read more.
This study sought to investigate the vertical distribution pattern of the soil faunal community in a low-altitude mountain area. On 8 July 2022, a low hill was selected as the study area, and soil arthropods were collected through traps. The leaf litter, vegetation type, and distribution quantity of each sampling site were investigated while the soil faunae were collected. In addition, the soil’s physical and chemical parameters were measured. The results of a one-way ANOVA showed that there were significant differences (p < 0.05) in the soil properties, leaf litter, and plant quantities at different altitudes within the research area. A total of 1086 soil arthropods, belonging to five classes and ten orders, were collected during the study period. The dominant species of soil arthropods at different altitudes were significantly different. The dominant species in low-altitude areas were Armadillidium sp. and Aethus nigritus. However, Eupolyphaga sinensis and Philodromidae were the dominant species in high-altitude areas. The results of a non-metric multidimensional scaling (NMDS) analysis showed that the soil faunae at different altitudes were clustered into two communities: a high-altitude community and a low-altitude community. With the increase in altitude, the species richness of the soil arthropods gradually decreased, and their abundance showed a decreasing trend. A redundancy analysis (RDA) of the soil arthropods and environmental factors showed that soil moisture (p < 0.01), pH (p < 0.01) and defoliation (p < 0.05) had significant effects on the distribution of the soil fauna. The results of a Pearson correlation analysis indicated that different environmental factors had interactive effects on the distribution of the soil arthropods. The quantity and species richness of the soil arthropods in different sample lines were tested using a variance analysis. The results showed that there were significantly smaller quantities of soil arthropods in the sampling line closer to the trekking ladder. This indicates that human tourism, namely mountaineering activities, had a direct impact on the soil fauna. This study can provide a reference for and data support in the development of biodiversity conservation measures for forest parks in low mountain areas. Full article
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17 pages, 3268 KiB  
Article
Species Composition and Distribution of Terrestrial Herbs in a High Montane Forest in Ecuador
by Catalina Quintana, Henrik Balslev and Renato Valencia
Diversity 2024, 16(5), 262; https://doi.org/10.3390/d16050262 - 27 Apr 2024
Viewed by 754
Abstract
In mountain tropical forests, understory herbs have received little attention compared to trees, and their commonness and rarity are virtually unknown. We studied ground herbs to explore how they are assembled in a full one-hectare plot and to test the influence of light [...] Read more.
In mountain tropical forests, understory herbs have received little attention compared to trees, and their commonness and rarity are virtually unknown. We studied ground herbs to explore how they are assembled in a full one-hectare plot and to test the influence of light intensity (LI) and topographic habitats in species composition. The plot is a humid montane forest located in the Pasochoa Volcano, at 3300 m. We found 43 genera and 50 perennial species (30 angiosperms in 17 families, and 20 ferns). Interestingly, herbs are 64% richer in species than trees in the same study plot (50 vs. 32). Herbs were mostly obligately terrestrial (70% of the species), while 30% were fallen climbers and epiphytes rooted in the ground. Across the forest, there were 31,119 individuals that covered 8.5% of the ground. We concluded that both LI and topography shaped the species distribution, the floristic composition, and the community structure of ground herbs. For instance, 12% of the species were exclusively found in places with high LI; the rest of species grew in medium- to low-LI environments. Concerning rarity, we found that 39% of the species are rare (judging by botanical collections; <100), which stresses the need of conservation strategies for this group of plants. Full article
(This article belongs to the Special Issue Diversity Hotspots)
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24 pages, 4379 KiB  
Article
The Mosquitoes of Morelos, Mexico: DNA Barcodes, Distribution, Ecology and the Resurrection of the Name Culiseta dugesi Dyar and Knab (Diptera: Culicidae)
by Aldo I. Ortega-Morales, Luis M. Hernández-Triana, Javier A. Garza-Hernández, Carlos M. Ramírez-Huicochea, Andrés J. Martínez-Gaona, J. Manuel Quijano-Barraza, Cassandra González-Acosta and Fabián Correa-Morales
Diversity 2024, 16(5), 261; https://doi.org/10.3390/d16050261 - 26 Apr 2024
Viewed by 350
Abstract
To update the record of mosquito diversity in the state of Morelos, Mexico, mosquito collections were conducted in both physiographical regions of Morelos: the Neo-volcanic Axis and the South Mountain Range. Immature stages were collected from aquatic habitats, while adult mosquitoes were collected [...] Read more.
To update the record of mosquito diversity in the state of Morelos, Mexico, mosquito collections were conducted in both physiographical regions of Morelos: the Neo-volcanic Axis and the South Mountain Range. Immature stages were collected from aquatic habitats, while adult mosquitoes were collected using CDC light traps, Shannon traps and approaching/landing on the collecting personnel. All specimens were identified using taxonomic keys and the mitochondrial cytochrome C oxidase subunit 1 (COI). Following Mexico State, this is the second study of mosquito taxonomy of a complete Mexican state using COI barcoding. In Morelos, a total of 58 species of mosquito occurs, of which we report 12 for first time (Aedes vexans, Ae. euplocamus, Ae. vargasi, Psorophora cilipes, Ps. lineata, Culex restrictor, Cx. interrogator, Cx. nigripalpus, Cx. tarsalis, Cx. sandrae, Cx. lactator and Toxorhynchites moctezuma). Morelos now ranks sixth in mosquito diversity among Mexican states. Phylogenetic trees were constructed for 32 species, including Ae. shannoni, which is a new record for GenBank databases. Additionally, we report COI barcode sequences of Culiseta dugesi Dyar and Knab, which is resurrected from the synonymy of Cs. particeps (Adams). Fourth-instar larvae and adult females of Cs. dugesi were redescribed. This brings the number of mosquito species in Mexico to 248. Ecological and distributional notes for the new records, the medical importance of mosquito species in Morelos, and an identification key for larvae and females of the known Culiseta species occurring in Mexico are also included. Full article
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18 pages, 1561 KiB  
Article
Biodiversity Conservation in Xishuangbanna, China: Diversity Analysis of Traditional Knowledge Related to Biodiversity and Conservation Progress and Achievement Evaluation
by Qing Huang, Yinzhi Kuang, Hao Zhou, Xunqi Li and Lun Yin
Diversity 2024, 16(5), 260; https://doi.org/10.3390/d16050260 - 26 Apr 2024
Viewed by 366
Abstract
Biodiversity plays an important role in maintaining the ecological balance of the earth. The study of traditional knowledge related to biological resources is a hot issue in the field of international biodiversity conservation. Xishuangbanna is a key area of biodiversity and a cultural [...] Read more.
Biodiversity plays an important role in maintaining the ecological balance of the earth. The study of traditional knowledge related to biological resources is a hot issue in the field of international biodiversity conservation. Xishuangbanna is a key area of biodiversity and a cultural hotspot of international significance. According to the Technical Regulation for Classification, Investigation, and Inventory of Traditional Knowledge Relating to Biological Diversity issued by the Ministry of Ecology and Environment, we investigated and catalogued the traditional knowledge related to biodiversity of the Jino people who have lived in Xishuangbanna for generations, and collected 490 entries of traditional knowledge related to biodiversity of the Jino people. Drawing on the traditional knowledge diversity index calculation method proposed by Wang Guoping, the overall traditional knowledge α-diversity index of the Jino people is 0.63, indicating that the richness of the traditional knowledge of the Jinuo people is relatively high. The traditional culture related to biodiversity, the traditional knowledge related to agricultural genetic resources, and the traditional technology related to the sustainable utilization of biological resources are relatively rich and diverse. The diversity index is 0.86, 0.82 and 0.79, respectively. In addition, Xishuangbanna has invested a lot of energy in biodiversity protection, including the establishment of nature reserves, botanical gardens, zoos, ecological tea gardens and other species reserves, and the promulgation of laws and policies related to biodiversity protection, and has achieved remarkable results in in situ protection and ex situ protection. On the basis of analyzing the progress and achievements of biodiversity conservation in Xishuangbanna, this study points out that Xishuangbanna faces challenges such as the loss of traditional knowledge, insufficient conservation efforts, and great changes in land use, and puts forward corresponding suggestions. Full article
(This article belongs to the Special Issue Biodiversity Conservation Planning and Assessment)
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28 pages, 11421 KiB  
Review
Understanding the Distribution, Behavioural Ecology, and Conservation Status of Asian Pelophylax
by Hina Amin and Amaël Borzée
Diversity 2024, 16(5), 259; https://doi.org/10.3390/d16050259 - 25 Apr 2024
Viewed by 282
Abstract
Understanding species from an ecological and phylogenetic perspective facilitates an understanding of their conservation status in relation to the changing world. The frog genus Pelophylax is among the largest in terms of amphibian biomass in the Palearctic, but species have not been thoroughly [...] Read more.
Understanding species from an ecological and phylogenetic perspective facilitates an understanding of their conservation status in relation to the changing world. The frog genus Pelophylax is among the largest in terms of amphibian biomass in the Palearctic, but species have not been thoroughly studied at the Asian continental scale. The phylogeographic relationship, behavioural ecology, and ecological requirements within the genus need clarification, despite generally good local coverage. Here, for the first time, we conducted a literature review focused on phylogeography and behavioural ecology, supported by ecological niche modelling of twelve Asian Pelophylax lineages. Finally, we compiled the known threats for each of the lineages. We first determined the presence of twelve species and species-candidate lineages. In terms of behavioural ecology, the main difference among lineages is the time to metamorphosis and the time to reach sexual maturity. The ecological models highlighted a match between the known presence of each clade and their suitable habitat and highlighted the Syr Darya drainage on the eastern shore of the Caspian Sea for the non-described Pelophylax “Syr Darya lineage”. Finally, we highlighted the greatest variation among lineages in terms of threats, as some lineages are threatened by numerous factors, whereas others are expanding. Full article
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23 pages, 9609 KiB  
Article
Too Warm and Too Dry—Decline and Threat of the Subarctic-Subalpine Liverwort Hygrobiella laxifolia in a Low Mountain Range in Central Europe under the Conditions of Climate Change
by Frank Müller, Ivana Marková and Christiane M. Ritz
Diversity 2024, 16(5), 258; https://doi.org/10.3390/d16050258 - 24 Apr 2024
Viewed by 330
Abstract
Using the liverwort Hygrobiella laxiflora as an example, this study aims to investigate the impact of climate change on montane species and their ecosystems. The study area is the Elbe Sandstone Mountains in Germany and the Czech Republic, where Hygrobiella laxifolia has an [...] Read more.
Using the liverwort Hygrobiella laxiflora as an example, this study aims to investigate the impact of climate change on montane species and their ecosystems. The study area is the Elbe Sandstone Mountains in Germany and the Czech Republic, where Hygrobiella laxifolia has an isolated occurrence in deeply carved gorges characterized by a specific microclimate (cellar climate). The focus is on determining the rate at which populations are affected. After little change in the population over a long period, a sudden sharp decline has been observed in recent years. The decline correlates with the mass proliferation of the European spruce bark beetle (Ips typographus) observed since 2017, which has led to a strong thinning of the forests in the area. In many areas of occurrence, the forests now have a much sparser tree layer or none at all. Competition from other, more competitive species also plays an important role as a cause of decline, as these have spread more widely on the sites due to the now higher light levels. The severe bark beetle infestation and the large-scale forest fire of 2022 both represent events that led to the almost complete deforestation of large parts of the study area, which was previously unknown on this scale. Since both the bark beetle infestation and the forest fire are strongly intensified by climate change, we assume that climate change is the main reason for the decline of Hygrobiella laxifolia in the area. The populations of Hygrobiella laxifolia of the Elbe Sandstone Mountains show some morphological peculiarities. As two new species have recently been described within Hygrobiella, we have integrated a sample from the area into a molecular phylogeny of Hygrobiella based on the plastid sequences of trnL-trnF intergenic spacer and matK to clarify the relationships. The sample from Elbe Sandstone Mountains fits well into the clade of Hygrobiella laxifolia. Full article
(This article belongs to the Special Issue Distribution of Bryophytes in a Changing World)
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11 pages, 3064 KiB  
Article
Towards a Comprehensive DNA Barcode Library of Stenochironomus Kieffer, 1919 (Diptera: Chironomidae) from China
by Hui Wang, Hai-Feng Xu, Chen-Hong Li, Hai-Xin Zhang, Yan-Ping Zhang, Bing-Jiao Sun and Xiao-Long Lin
Diversity 2024, 16(5), 257; https://doi.org/10.3390/d16050257 - 24 Apr 2024
Viewed by 289
Abstract
The adoption of DNA-based assessments for biodiversity monitoring has been on the rise. However, the effectiveness of DNA-based taxonomic assignments heavily relies on the availability and reliability of DNA barcode libraries. There is growing demand for a comprehensive understanding of aquatic biodiversity and [...] Read more.
The adoption of DNA-based assessments for biodiversity monitoring has been on the rise. However, the effectiveness of DNA-based taxonomic assignments heavily relies on the availability and reliability of DNA barcode libraries. There is growing demand for a comprehensive understanding of aquatic biodiversity and the critical role of Chironomidae, specifically Stenochironomus in freshwater ecosystems. Therefore, our objective is to develop a reference barcode library for Stenochironomus in China. From 2016 to 2021, we collected Stenochironomus specimens in diverse Chinese landscapes using malaise traps, light traps, and sweep nets. These specimens were carefully preserved for DNA extraction and barcode sequencing. Our analysis unveiled 36 unique operational taxonomic units from 180 COI barcode sequences through a Neighbor-Joining tree and Automatic Barcode Gap Discovery program, highlighting a significant diversity within the Stenochironomus species. The findings emphasize the constraints of conventional morphological identification methods, especially for species with ambiguous morphologies. It also underscores the effectiveness of DNA barcoding in revealing hidden species diversity, known as cryptic species. Consequently, this study advocates for an integrated taxonomic approach, combining morphological and molecular data, to refine species identification and conservation strategies. Full article
(This article belongs to the Special Issue Freshwater Zoobenthos Biodiversity, Evolution and Ecology)
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10 pages, 902 KiB  
Brief Report
An Initial Survey of Unionid Mussels in Lakes East of the Missouri River in South Dakota, USA
by Riley E. Henderson, Katherine M. Wollman, Chelsey A. Pasbrig and Michael E. Barnes
Diversity 2024, 16(5), 256; https://doi.org/10.3390/d16050256 - 24 Apr 2024
Viewed by 286
Abstract
This study surveyed freshwater mussels (family Unionidae) in 116 lakes and reservoirs east of the Missouri River in South Dakota, USA, during 2017. Using two-person–hour/site timed searches, evidence of a total of 1789 mussels, including 1053 live mussels, was obtained from 50 waters. [...] Read more.
This study surveyed freshwater mussels (family Unionidae) in 116 lakes and reservoirs east of the Missouri River in South Dakota, USA, during 2017. Using two-person–hour/site timed searches, evidence of a total of 1789 mussels, including 1053 live mussels, was obtained from 50 waters. Nine species, from two different orders, were found in lakes and reservoirs throughout five of the six major river drainages east of the Missouri River. The native species observed included Giant Floater Pyganodon grandis, Fatmucket Lampsilis siliquoidea, Threeridge Amblema plicata, White Heelsplitter Lasmigona complanata, Wabash Pigtoe Fusconaia flava, Deertoe Truncilla truncata, and Pink Heelsplitter Potamilus alatus. Giant Floater was the most widespread and abundant species observed, representing 63.3% of the live mussels sampled. Two non-native species, Zebra Mussel Dreissena polymorpha and Chinese Basket Clam Corbicula fluminea, were also documented from three water bodies in the lower Missouri River drainage. Overall, mussel abundance was negatively correlated with lake water conductivity and positively correlated with turbidity. No significant correlations were observed between species abundance and water temperature, pH, dissolved oxygen, or substrate particle size. Full article
(This article belongs to the Special Issue Population Ecology and Protection of Freshwater Mussels)
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15 pages, 1729 KiB  
Article
Evaluation of Pesticides on Detritus-Inhabiting and Root-Associated Fungi in Aquatic Habitats and Potential Implications
by Daniel B. Raudabaugh, Andrew N. Miller and Claudia K. Gunsch
Diversity 2024, 16(5), 255; https://doi.org/10.3390/d16050255 - 24 Apr 2024
Viewed by 340
Abstract
Pesticide contamination of aquatic ecosystems poses a significant threat to humans and can adversely affect fungal-driven processes in these understudied habitats. Here, we investigated the effects of four pesticides on detritus-inhabiting and plant root-associated fungi from streams, peatlands, and saltwater marshes. Additionally, we [...] Read more.
Pesticide contamination of aquatic ecosystems poses a significant threat to humans and can adversely affect fungal-driven processes in these understudied habitats. Here, we investigated the effects of four pesticides on detritus-inhabiting and plant root-associated fungi from streams, peatlands, and saltwater marshes. Additionally, we assessed the isolates’ capacities to degrade three carbon sources to understand the impact of pesticides on fungal-driven processes. Pesticide assays were conducted in 96-well glass-coated plates, with fungal growth measured using a UV-Vis spectrophotometer set to 595 nm. Assays included technical replication (n = 6), replication over time (n = 2), negative controls, and carry-over controls. In total, we assayed more than 153 isolates, representing up to 97 fungal genera. Results showed that 1.9%, 49.7%, 3.1%, and 5.6% of the isolates exhibited consistently lower growth when exposed to atrazine, mancozeb, cypermethrin, and malathion, respectively. Furthermore, 101 isolates, comprising 87 genera, were tested for cellulase, starch degradation, and tannase activity, with 41.6%, 28.7%, and 30.7% of the isolates testing positive, respectively. These findings suggest that while many species demonstrate functional redundancy, some fungal species are sensitive to current environmental pesticide levels, which affects their growth and may have broader implications on ecosystem health. Full article
(This article belongs to the Special Issue Fungi, Ecology, and Global Change)
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11 pages, 2500 KiB  
Article
The Lichen Genus Letrouitia (Brigantiaeaceae, Ascomycota) in China
by Can Cui, Mingzhu Dou, Shuhao Jiang and Zefeng Jia
Diversity 2024, 16(5), 254; https://doi.org/10.3390/d16050254 - 23 Apr 2024
Viewed by 305
Abstract
Based on morphological, chemical and molecular studies, two new species of the lichen genus Letrouitia are newly described from China. Letrouitia arcuata is distinguished by its arcuate ascospores [8–10(–12)-locular, (28–)33–50(–62.5) × (8–)10–14.5 µm] and L. sinuosa by its ascomata with wavy margins and [...] Read more.
Based on morphological, chemical and molecular studies, two new species of the lichen genus Letrouitia are newly described from China. Letrouitia arcuata is distinguished by its arcuate ascospores [8–10(–12)-locular, (28–)33–50(–62.5) × (8–)10–14.5 µm] and L. sinuosa by its ascomata with wavy margins and ascospores with lens-shaped locules [6–8-locular, (18–)19.5–32(–34) × (6.5–)8–14 μm]. In addition, L. magenta is reported for the first time as a new record in China, characterized by small and round ascomata. The descriptions, distribution and phylogenetic analysis of the respective species have been actualized and a key to the Letrouitia species known from China is provided. Full article
(This article belongs to the Special Issue Phylogeny, Taxonomy and Ecosystems of Lichens)
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5 pages, 1676 KiB  
Interesting Images
Threats to a Temperate Kelp Forest Species, Ecklonia cava, through Tropical Fish Herbivory Associated with Sea Surface Warming in the East China Sea
by Sun Kyeong Choi, Taihun Kim, Young Baek Son and Sang Rul Park
Diversity 2024, 16(5), 253; https://doi.org/10.3390/d16050253 - 23 Apr 2024
Viewed by 305
Abstract
Kelp forests in Korean waters, mainly consisting of Ecklonia cava, provide ecologically and economically important ecosystems. However, they are severely threatened by increasing sea surface temperature (SST). In 2023, an unusually high SST was observed in the northern East China Sea, where [...] Read more.
Kelp forests in Korean waters, mainly consisting of Ecklonia cava, provide ecologically and economically important ecosystems. However, they are severely threatened by increasing sea surface temperature (SST). In 2023, an unusually high SST was observed in the northern East China Sea, where the average SST from August to November 2023 was found to be 1.1 °C higher than the average SST during the same period over the last two decades. Our photo images and videos reveal increasing feeding on E. cava populations by tropical herbivore rabbitfish (Siganus canaliculatus, Siganus fuscescens) associated with the impact of increasing SST. Given the fall reproductive peak of E. cava population, increased herbivory by tropical rabbitfish could have a significant adverse impact on the composition of temperate kelp forests. Full article
(This article belongs to the Collection Interesting Images from the Sea)
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