Non-popular Biological Models as a Promising Tool of Cell Biology

A special issue of Cells (ISSN 2073-4409). This special issue belongs to the section "Cell Methods".

Deadline for manuscript submissions: closed (15 November 2021) | Viewed by 8917

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Team "Mitochondria, Apoptosis and Autophagy Signalling", Institut de Neurosciences, Université Paris Descartes, CNRS FR 3636, 45 rue des Saints-Pères, 75270 Paris CEDEX 06, France
Interests: apoptosis; autophagy, mitochondria, proteins/lipids interactions in cell death signaling and experimental toxicology
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INSERM U 1197, Hopital Paul Brousse, Batiment Lavoisier, 14 avenue Paul Vaillant Couturier, CEDEX, 94807 Villejuif, France
Interests: innate immunity; cell death; mitochondria; ISR

Special Issue Information

Dear Colleagues,

Most research in cell biology today uses just a handful of model systems, including yeast, Arabidopsis, Drosophila, C. elegans, zebrafish, mouse, and cultured tumoral mammalian cells. When it comes to most biological questions, the best system to find their answer is likely found among these models.

While having a set of go-to models can have indisputable advantages, it also comes with a set of challenges. For example, research that does not use what has already been established tends to receive less visibility—and, as researchers are rewarded for publishing more frequently, it becomes quite hard to venture outside the realm of the dominant cellular models. However, as stated by Blackburn after their Nobel prize, “biology sometimes reveals its general principles through that which appears to be arcane and even bizarre” (Blackburn et al., 2006).

It is in that “arcane” and “bizarre” that most biological mysteries have found their answers, which are usually identified using non-conventional models. As such, we believe it is pivotal to restart “curiosity-driven research” in order for the field to move forward, as the best system for certain questions may be an unknown, little studied organism.

New and modern research tools are facilitating a renaissance and/or the development of interesting and unusual organisms as model systems. This might be a risky approach, but we believe that there is a need for new models and predict that an ever-expanding breadth of models systems may be the hallmark of future cell biology.

Based on the above, we are proposing a Special Issue on “Non-Popular Biological Models as a Promising Tool of Cell Biology” and invite you to participate with original articles that may highlight new promising discoveries. Indeed, we argue that some of the biggest future discoveries in cell biology could come from the development and study of new, atypical model organisms. 

Blackburn, E.H.; Greider, C.W.; Szostak, J.W. Telomeres and telomerase: The path from maize, Tetrahymena and yeast to human cancer and aging. Nat. Med. 2006, 12, 1133–1138.

Dr. Patrice X. Petit
Dr. Damien Arnoult
Guest Editors

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21 pages, 2505 KiB  
Article
Combining Nanopore and Illumina Sequencing Permits Detailed Analysis of Insertion Mutations and Structural Variations Produced by PEG-Mediated Transformation in Ostreococcus tauri
by Julie Thomy, Frederic Sanchez, Marta Gut, Fernando Cruz, Tyler Alioto, Gwenael Piganeau, Nigel Grimsley and Sheree Yau
Cells 2021, 10(3), 664; https://doi.org/10.3390/cells10030664 - 17 Mar 2021
Cited by 3 | Viewed by 3597
Abstract
Ostreococcus tauri is a simple unicellular green alga representing an ecologically important group of phytoplankton in oceans worldwide. Modern molecular techniques must be developed in order to understand the mechanisms that permit adaptation of microalgae to their environment. We present for the first [...] Read more.
Ostreococcus tauri is a simple unicellular green alga representing an ecologically important group of phytoplankton in oceans worldwide. Modern molecular techniques must be developed in order to understand the mechanisms that permit adaptation of microalgae to their environment. We present for the first time in O. tauri a detailed characterization of individual genomic integration events of foreign DNA of plasmid origin after PEG-mediated transformation. Vector integration occurred randomly at a single locus in the genome and mainly as a single copy. Thus, we confirmed the utility of this technique for insertional mutagenesis. While the mechanism of double-stranded DNA repair in the O. tauri model remains to be elucidated, we clearly demonstrate by genome resequencing that the integration of the vector leads to frequent structural variations (deletions/insertions and duplications) and some chromosomal rearrangements in the genome at the insertion loci. Furthermore, we often observed variations in the vector sequence itself. From these observations, we speculate that a nonhomologous end-joining-like mechanism is employed during random insertion events, as described in plants and other freshwater algal models. PEG-mediated transformation is therefore a promising molecular biology tool, not only for functional genomic studies, but also for biotechnological research in this ecologically important marine alga. Full article
(This article belongs to the Special Issue Non-popular Biological Models as a Promising Tool of Cell Biology)
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18 pages, 2601 KiB  
Review
Nematostella vectensis, an Emerging Model for Deciphering the Molecular and Cellular Mechanisms Underlying Whole-Body Regeneration
by Eric Röttinger
Cells 2021, 10(10), 2692; https://doi.org/10.3390/cells10102692 - 8 Oct 2021
Cited by 10 | Viewed by 4792
Abstract
The capacity to regenerate lost or injured body parts is a widespread feature within metazoans and has intrigued scientists for centuries. One of the most extreme types of regeneration is the so-called whole body regenerative capacity, which enables regeneration of fully functional organisms [...] Read more.
The capacity to regenerate lost or injured body parts is a widespread feature within metazoans and has intrigued scientists for centuries. One of the most extreme types of regeneration is the so-called whole body regenerative capacity, which enables regeneration of fully functional organisms from isolated body parts. While not exclusive to this habitat, whole body regeneration is widespread in aquatic/marine invertebrates. Over the past decade, new whole-body research models have emerged that complement the historical models Hydra and planarians. Among these, the sea anemone Nematostella vectensis has attracted increasing interest in regard to deciphering the cellular and molecular mechanisms underlying the whole-body regeneration process. This manuscript will present an overview of the biological features of this anthozoan cnidarian as well as the available tools and resources that have been developed by the scientific community studying Nematostella. I will further review our current understanding of the cellular and molecular mechanisms underlying whole-body regeneration in this marine organism, with emphasis on how comparing embryonic development and regeneration in the same organism provides insight into regeneration specific elements. Full article
(This article belongs to the Special Issue Non-popular Biological Models as a Promising Tool of Cell Biology)
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