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Biology, Volume 14, Issue 2 (February 2025) – 115 articles

Cover Story (view full-size image): The evolution of sharks, rays and skates (the Neoselachii) has been shaped by extinction and diversification events since the Mesozoic, yet the mechanisms underlying their evolutionary success still remain unclear. Here, we demonstrate that climate and tectonic-driven changes, particularly shallow marine habitat availability and CO2 fluctuations, played a crucial role in their evolution. Our findings reveal, for the first time, the negative impact of high CO2 on neoselachian diversity in deep time. Despite the major environmental shifts experienced by neoselachians, they have demonstrated remarkable resilience, reaching a peak in diversity during the Paleogene. Understanding these patterns is crucial not only for providing insights into their resilience but also for comprehending their future adaptability in a rapidly changing world. View this paper
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28 pages, 2164 KiB  
Review
The Role of tRNA-Derived Small RNAs (tsRNAs) in Regulating Cell Death of Cardiovascular Diseases
by Jiaxu Guo, Xinzhe Chen, Jiahao Ren, Yunhong Wang, Kun Wang and Sumin Yang
Biology 2025, 14(2), 218; https://doi.org/10.3390/biology14020218 - 19 Feb 2025
Abstract
Transfer RNA is a class of non-coding RNA that plays a role in amino acid translocation during protein synthesis. After specific modification, the cleaved fragment is called tRNA-derived small RNA. The advancement of bioinformatics technology has led to an increase in the visibility [...] Read more.
Transfer RNA is a class of non-coding RNA that plays a role in amino acid translocation during protein synthesis. After specific modification, the cleaved fragment is called tRNA-derived small RNA. The advancement of bioinformatics technology has led to an increase in the visibility of small RNA derived from tRNA, and their functions in biological processes are being revealed. These include gene silencing, transcription and translation, epigenetics, and cell death. These properties have led to the implication of tsRNAs in various diseases. Although the current research mainly focuses on the role of tRNA-derived small RNA in cancer, there is mounting evidence that they are also strongly associated with cardiovascular disease, including cardiac hypertrophy, atrial fibrillation, heart failure, and myocarditis. Therefore, the regulatory role of tRNA-derived small RNA in cardiovascular disease will become an emerging therapeutic strategy. This review succinctly summarizes the characteristics, classification, and regulatory effect of tsRNA. By exploring the mechanism of tsRNA, it will provide a new tool for the diagnosis and prognosis of cardiovascular disease. Full article
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19 pages, 15587 KiB  
Article
Long-Term Engraftment of Cryopreserved Human Neurons for In Vivo Disease Modeling in Neurodegenerative Disease
by David J. Marmion, Peter Deng, Benjamin M. Hiller, Rachel L. Lewis, Lisa J. Harms, David L. Cameron, Jan A. Nolta, Jeffrey H. Kordower, Kyle D. Fink and Dustin R. Wakeman
Biology 2025, 14(2), 217; https://doi.org/10.3390/biology14020217 - 19 Feb 2025
Abstract
The transplantation of human neurons into the central nervous system (CNS) offers transformative opportunities for modeling neurodegenerative diseases in vivo. This study evaluated the survival, integration, and functional properties of cryopreserved forebrain GABAergic neurons (iGABAs) derived from human induced pluripotent stem cells (iPSCs) [...] Read more.
The transplantation of human neurons into the central nervous system (CNS) offers transformative opportunities for modeling neurodegenerative diseases in vivo. This study evaluated the survival, integration, and functional properties of cryopreserved forebrain GABAergic neurons (iGABAs) derived from human induced pluripotent stem cells (iPSCs) across three species used in translational research. iGABAs were stereotactically injected into the striatum of Sprague–Dawley rats, immunodeficient RNU rats, R6/2 Huntington’s disease (HD) mice, wild-type controls, and Cynomolgus monkeys. Post-transplantation, long-term assessments revealed robust neuronal survival, extensive neurite outgrowth, and integration with host CNS environments. In immunodeficient rats, iGABAs innervated the neuraxis, extending from the prefrontal cortex to the midbrain, while maintaining mature neuronal phenotypes without uncontrolled proliferation. Similarly, grafts in nonhuman primates showed localized survival and stable phenotype at one month. In the neurodegenerative milieu of HD mice, iGABAs survived up to six months, projecting into the host striatum and white matter, with evidence of mutant huntingtin aggregates localized within the graft, indicating pathological protein transfer. These findings underscore the utility of cryopreserved iGABAs as a reproducible, scalable model for disease-specific CNS investigations and mechanistic studies of proteinopathic propagation. This work establishes a critical platform for studying neurodegenerative diseases and developing therapeutic interventions. Full article
(This article belongs to the Special Issue Stem Cells in Neurological Disorders: Challenges and Opportunities)
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9 pages, 832 KiB  
Brief Report
Effect of Fertilization on the Performance of Adult Pinus pinea Trees
by Verónica Loewe-Muñoz, Claudia Bonomelli, Claudia Delard, Rodrigo Del Río and Monica Balzarini
Biology 2025, 14(2), 216; https://doi.org/10.3390/biology14020216 - 19 Feb 2025
Abstract
Background: Pinus pinea L. (stone pine) produces pine nuts of high value. Its cultivation is carried out in forests and plantations, with intensive management techniques being studied to stimulate diameter growth, which is positively related to cone production. Aims: To evaluate the effect [...] Read more.
Background: Pinus pinea L. (stone pine) produces pine nuts of high value. Its cultivation is carried out in forests and plantations, with intensive management techniques being studied to stimulate diameter growth, which is positively related to cone production. Aims: To evaluate the effect of fertilization in a 30-year-old plantation and to understand if adult trees respond to nutritional management. Methods: A trial with completely randomized block design was established with two treatments (fertilization/control) and three repetitions. The plantation, with a density of 204 trees/ha, is located in central Chile, on a sandy-loam soil with neutral pH, medium organic matter content, and a fertility condition that limits tree development. Fertilization considered the repeated application of macro (N, P, K, S, Mg) and micronutrients (B, Fe, and Zn). Periodic measurements of height, stem and crown diameter, and cone production were made up to age 36. Cone production was evaluated using mixed generalized linear models and growth variables using ANOVA (analysis of variance). Results: Significant effects of fertilization on DBH annual growth (35% higher than the control, p < 0.001) and in cone production (3 times higher, p < 0.0001) were found. Conclusions: Fertilization is a useful practice to improve the growth and cone productivity of the species. Full article
(This article belongs to the Special Issue Dendrochronology in Arid and Semiarid Regions)
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21 pages, 2339 KiB  
Article
Characterization of Exosome-like Nanoparticles from Saffron Tepals and Their Immunostimulatory Activity
by Cristian Martínez Fajardo, Alberto J. López-Jiménez, Susana López-López, Lucía Morote, Elena Moreno-Giménez, Gianfranco Diretto, María José M. Díaz-Guerra, Ángela Rubio-Moraga, Oussama Ahrazem and Lourdes Gómez-Gómez
Biology 2025, 14(2), 215; https://doi.org/10.3390/biology14020215 - 18 Feb 2025
Abstract
Plant exosomes exhibit high stability and easy absorption, and have emerged as promising bioactive tools due to their potential health benefits and biomedical applications. Saffron tepals contain abundant metabolites with potential therapeutic properties and were used for exosome extraction by ultracentrifugation and gradient [...] Read more.
Plant exosomes exhibit high stability and easy absorption, and have emerged as promising bioactive tools due to their potential health benefits and biomedical applications. Saffron tepals contain abundant metabolites with potential therapeutic properties and were used for exosome extraction by ultracentrifugation and gradient purification. The exosomes showed an average particle size of 151.5 ± 79.6 nm and exhibited a spherical morphology. Five well-conserved miRNAs—miR157, miR166, miR168, miR396, and miR398—were identified in the exosomes, which are involved in the coordination of growth and physiological plant responses with endogenous and environmental abiotic and biotic signals, and their potential targets in mammals are upregulated in specific cancer types and associated with inflammation. Proteome analysis revealed an enrichment of proteasome proteins, ribosomal proteins, and proteins involved in the cytoskeleton, transport across the membrane (ABC transporters), and vesicle trafficking (RAB GTPases, TM9SF and Coatomer subunits). Metabolite analyses showed mainly anthocyanins. The exosomes have selective stimulatory activity on macrophages, increasing the expression of surface molecules (CD80 and CD86), and cytokines (IL-1β, IL-6, and TNF-α), but not the levels of IL-10. Overall, these results indicated that saffron flowers are an effective and abundant source of exosomes as new nanomedicines for human health. Full article
(This article belongs to the Section Biochemistry and Molecular Biology)
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14 pages, 1086 KiB  
Review
CNPY2 in Solid Tumors: Mechanisms, Biomarker Potential, and Therapeutic Implications
by Sayan Mullick Chowdhury, Feng Hong, Christian Rolfo, Zihai Li, Kai He, Robert Wesolowski, Amir Mortazavi and Lingbin Meng
Biology 2025, 14(2), 214; https://doi.org/10.3390/biology14020214 - 18 Feb 2025
Abstract
Canopy FGF signaling regulator 2 (CNPY2) has emerged as a crucial player in cancer development by promoting cell proliferation, tissue repair, and angiogenesis. This review synthesizes the current understanding of CNPY2’s role in solid tumors, particularly renal cell carcinoma, prostate cancer, hepatocellular carcinoma, [...] Read more.
Canopy FGF signaling regulator 2 (CNPY2) has emerged as a crucial player in cancer development by promoting cell proliferation, tissue repair, and angiogenesis. This review synthesizes the current understanding of CNPY2’s role in solid tumors, particularly renal cell carcinoma, prostate cancer, hepatocellular carcinoma, and non-small-cell lung cancer. CNPY2 modulates key pathways such as p53, MYLIP, NF-κB, and AKT/GSK3β, thereby driving tumor growth and progression. In renal cell carcinoma, CNPY2 paradoxically promotes tumor growth through p53 upregulation, while in hepatocellular carcinoma, CNPY2 drives cell cycle progression via p53 destabilization. In prostate cancer, it enhances tumor progression by stabilizing androgen receptors through MYLIP interaction, and in non-small-cell lung cancer, it contributes to chemoresistance and metastasis through NF-κB and AKT/GSK3β signaling. Additionally, CNPY2 influences the tumor microenvironment, impacting immune function and metastatic potential. As a potential biomarker, CNPY2 shows promise for cancer detection and prognosis, particularly when used in combination with other markers. Early therapeutic strategies, including siRNA and miRNA approaches, are under exploration, though challenges remain due to CNPY2’s expression in normal tissues and potential off-target effects. This review underscores the need for further research to fully elucidate CNPY2’s oncogenic mechanisms and develop targeted therapies. Improved understanding of CNPY2’s diverse roles may lead to novel diagnostic and therapeutic approaches in solid tumors. Full article
(This article belongs to the Section Cancer Biology)
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17 pages, 2001 KiB  
Article
Farnesol Improves Endoplasmic Reticulum Stress and Hepatic Metabolic Dysfunction Induced by Tunicamycin in Mice
by Naqash Goswami, Lionel Kinkpe, Lun Hua, Yong Zhuo, Zhengfeng Fang, Lianqiang Che, Yan Lin, Shengyu Xu, Xuemei Jiang, Bin Feng and De Wu
Biology 2025, 14(2), 213; https://doi.org/10.3390/biology14020213 - 18 Feb 2025
Abstract
Endoplasmic reticulum (ER) stress significantly affects liver metabolism, often leading to disorders such as hepatic steatosis. Tunicamycin (TM), a known ER stress inducer, is frequently used to model metabolic stress, but its specific effects on liver energy homeostasis remain unclear. This study investigates [...] Read more.
Endoplasmic reticulum (ER) stress significantly affects liver metabolism, often leading to disorders such as hepatic steatosis. Tunicamycin (TM), a known ER stress inducer, is frequently used to model metabolic stress, but its specific effects on liver energy homeostasis remain unclear. This study investigates how farnesol (FOH), a natural compound with antioxidant and anti-inflammatory properties, counteracts TM-induced ER stress and its associated metabolic disruptions in the liver. Using both primary hepatocytes and a mouse model, this study demonstrates that TM treatment caused upregulation of ER stress markers, including ATF4, and disrupted genes related to lipid metabolism and gluconeogenesis. Co-treatment with FOH reduced these stress markers and restored the expression of metabolic genes. In vivo, FOH treatment alleviated oxidative stress, reduced lipid accumulation, and restored normal glycogen and lipid metabolism. Histological analysis further confirmed that FOH preserved liver architecture and minimized cellular damage. FOH also stabilized serum lipid profiles and modulated key metabolic biomarkers, suggesting its protective role against TM-induced liver injury. These findings suggest that FOH has therapeutic potential in mitigating ER stress-related metabolic dysfunctions, offering promising insights for the treatment of liver diseases linked to metabolic stress. Full article
(This article belongs to the Special Issue Molecular Basis of Metabolic Homeostasis)
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5 pages, 376 KiB  
Editorial
Global Initiative for the Risk Assessment Working Group of Invasive Alien Species
by Xubin Pan
Biology 2025, 14(2), 212; https://doi.org/10.3390/biology14020212 - 18 Feb 2025
Abstract
Biological invasion is not only an ecological phenomenon but also an administrative challenge [...] Full article
(This article belongs to the Special Issue Risk Assessment for Biological Invasions)
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15 pages, 2854 KiB  
Article
Gut Microbiota Alteration with Moderate-to-Vigorous-Intensity Exercise in Middle School Female Football Athletes
by Jianlou Yang, Wei Zhang and Chen Dong
Biology 2025, 14(2), 211; https://doi.org/10.3390/biology14020211 - 17 Feb 2025
Abstract
Background: The gut microbiota significantly influences health and metabolic processes. This study aimed to investigate the impact of exercise intensity on the gut microbiota of middle school female football athletes. Methods: In this four-week controlled comparative study, twenty-nine participants were divided into three [...] Read more.
Background: The gut microbiota significantly influences health and metabolic processes. This study aimed to investigate the impact of exercise intensity on the gut microbiota of middle school female football athletes. Methods: In this four-week controlled comparative study, twenty-nine participants were divided into three groups: non-exercise group (NEG), moderate-intensity exercise group (MIEG), and vigorous-intensity exercise group (VIEG). They followed their respective exercise regimens for four weeks. Fecal samples were collected for 16S rRNA gene sequencing to evaluate microbiota composition. Results: The MIEG exhibited significantly greater microbial diversity compared to the NEG, while the VIEG showed lower diversity than the MIEG. Various microbiota profiles were identified, with the MIEG having higher levels of beneficial bacteria such as Bacteroides. Conclusions: Moderate-intensity exercise promotes a healthier gut microbiota compared to vigorous exercise in young female athletes. These findings underscore the potential of moderate exercise to enhance gut health and may inform training strategies for adolescent athletes. Full article
(This article belongs to the Special Issue Gut Microbiome in Health and Disease (2nd Edition))
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25 pages, 1709 KiB  
Article
Objective Pain Assessment Using Deep Learning Through EEG-Based Brain–Computer Interfaces
by Abeer Al-Nafjan, Hadeel Alshehri and Mashael Aldayel
Biology 2025, 14(2), 210; https://doi.org/10.3390/biology14020210 - 17 Feb 2025
Abstract
Objective pain measurements are essential in clinical settings for determining effective treatment strategies. This study aims to utilize brain–computer interface technology for reliable pain classification and detection. We developed an electroencephalography-based pain detection system comprising two main components: (1) pain/no-pain detection and (2) [...] Read more.
Objective pain measurements are essential in clinical settings for determining effective treatment strategies. This study aims to utilize brain–computer interface technology for reliable pain classification and detection. We developed an electroencephalography-based pain detection system comprising two main components: (1) pain/no-pain detection and (2) pain severity classification across three levels: low, moderate, and high. Deep learning models, including convolutional neural networks and recurrent neural networks, were employed to classify the wavelet features extracted through time–frequency domain analysis. Furthermore, we compared the performance of our system against conventional machine learning models, such as support vector machines and random forest classifiers. Our deep learning approach outperformed the baseline models, achieving accuracies of 91.84% for pain/no-pain detection and 87.94% for pain severity classification, respectively. Full article
(This article belongs to the Special Issue The Convergence of Neuroscience and ICT: From Data to Insights)
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25 pages, 11606 KiB  
Article
The Clinopathological and Prognostic Significance of SPOCK1 in Gynecological Cancers: A Bioinformatics Based Analysis
by Enes Karaman, Fatih Yay, Durmus Ayan, Ergul Bayram and Sefa Erturk
Biology 2025, 14(2), 209; https://doi.org/10.3390/biology14020209 - 16 Feb 2025
Abstract
Background: Sparc/osteonectin, cwcv, and kazal-like domains proteoglycan 1 (SPOCK1) is an oncogene that promotes tumor formation and progression in certain types of cancer and is associated with poor survival rates. However, there is limited information on the importance of SPOCK1 in [...] Read more.
Background: Sparc/osteonectin, cwcv, and kazal-like domains proteoglycan 1 (SPOCK1) is an oncogene that promotes tumor formation and progression in certain types of cancer and is associated with poor survival rates. However, there is limited information on the importance of SPOCK1 in gynecological cancers in the literature. The aim of this study was to explore the role of SPOCK1 in ovarian serous cystadenocarcinoma (OV), cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC), and uterine corpus endometrial carcinomas (UCEC). Methods: The data used in this study were obtained from the GEPIA2, TCGA, Kaplan–Meier Plotter, GeneMANIA, UALCAN, cBioPortal, and TIMER databases. Overall survival (OS) and relapse-free survival (RFS) rates were evaluated by Kaplan–Meier survival analysis. Spearman’s rho and statistical significance values were obtained for the correlation between SPOCK1 expression and tumor infiltration by different immune cells. Results: Lower SPOCK1 gene expression was observed in CESC and UCEC compared to normal tissue (p < 0.05), but the OV did not differ significantly (p > 0.05). In OV, SPOCK1 gene expression was solely linked to age; in CESC, it was linked to age, stage, weight, and histology; and in UCEC, it was linked to age, stage, weight, and menopausal status. Conclusions:SPOCK1 gene expression in UCEC showed weak positive correlations with CD8+ T cells and weak negative correlations with CD4+ T cells. SPOCK1 may be a potential prognostic and therapeutic target for gynecological cancers. Full article
(This article belongs to the Special Issue Multi-omics Data Integration in Complex Diseases)
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10 pages, 2293 KiB  
Brief Report
Gait Asymmetry and Post-Traumatic Osteoarthritis Following Anterior Cruciate Ligament Rupture: A Preliminary Study
by Samuel Pringle and Kristiaan D’Août
Biology 2025, 14(2), 208; https://doi.org/10.3390/biology14020208 - 16 Feb 2025
Abstract
Knee post-traumatic osteoarthritis (PTOA) often develops in younger populations following anterior cruciate ligament (ACL) rupture, accounting for 12% of all symptomatic osteoarthritis (OA). The current literature implicates gait asymmetry in late-stage knee OA progression; however, early-knee PTOA development involvement is ill defined. This [...] Read more.
Knee post-traumatic osteoarthritis (PTOA) often develops in younger populations following anterior cruciate ligament (ACL) rupture, accounting for 12% of all symptomatic osteoarthritis (OA). The current literature implicates gait asymmetry in late-stage knee OA progression; however, early-knee PTOA development involvement is ill defined. This study explored gait asymmetry involvement in early-stage knee PTOA following ACL ruptures. Gait asymmetry, measured as asymmetry in duty factor (relative contact time), and joint loading data were collected, using infrared-camera motion capture and Kistler force plates for participants exhibiting either historical ACL ruptures (ACL+; n = 4) or no previous joint trauma (ACL−; n = 11). Joint loading measures included external knee adduction moment (EKAM) and external knee flexion moment (KFM), early (peak 1; EKAMp1 and KFMp1) and late (peak 2; EKAMp2 and KFMp2), stance peaks (Nm/kg), and respective time integrals (Nm·ms/kg; iEKAMp1, iEKAMp2, iKFMp1, and iKFMp2). ACL+ exhibited greater asymmetrical duty factor (78% difference) and greater joint load differences: EKAMp1 (26%), EKAMp2 (49%), KFMp1 (37%), iKFMp1 (44%), and iKFMp2 (60%). Significant relationships were found between duty factor asymmetry and both KFMp2 (R2 = 0.665) and iKFMp2 (R2 = 0.504). These preliminary data suggest gait asymmetry-induced joint loading may contribute to knee PTOA progression, but further research with increased sample sizes and the quantitative assessment of cartilage status is required. Full article
(This article belongs to the Special Issue Musculoskeletal Biology: Impact of Ageing and Disease)
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27 pages, 6822 KiB  
Article
Fish Community Resource Utilization Reveals Benthic–Pelagic Trophic Coupling Along Depth Gradients in the Beibu Gulf, South China Sea
by Xiaodong Yang, Konglan Luo, Jiawei Fu, Bin Kang, Xiongbo He and Yunrong Yan
Biology 2025, 14(2), 207; https://doi.org/10.3390/biology14020207 - 16 Feb 2025
Abstract
Benthic–pelagic coupling is a key approach to studying the structure and energy dynamics of shallow marine food webs. The movement and foraging patterns of consumers are major drivers of nutrient and energy distribution in ecosystems and are critical for maintaining ecosystem stability. To [...] Read more.
Benthic–pelagic coupling is a key approach to studying the structure and energy dynamics of shallow marine food webs. The movement and foraging patterns of consumers are major drivers of nutrient and energy distribution in ecosystems and are critical for maintaining ecosystem stability. To better understand the energy coupling of consumers between coastal marine habitats, this study employed a Bayesian mixture model using SC and SI data. By classifying functional groups based on taxonomy, morphological traits, and feeding ecology similarities, we constructed a trophic network and analyzed the changes in fish feeding patterns and the dynamics of benthic–pelagic coupling across environmental gradients. The results show that the primary carbon sources in the Beibu Gulf are phytoplankton, particulate organic matter (POM), and sediment organic matter (SOM), with phytoplankton contributing the most. Pelagic food subsidies dominate the food web. Small sized, abundant planktivorous and benthivorous fish act both as predators and important prey, transferring carbon and energy derived from both benthic and pelagic zones to higher trophic-levels. Larger, higher-trophic-level piscivorous fish serve as key energy couplers, preying on organisms from various habitats. Depth and chlorophyll–a (Chl–a) are the two key variables influencing the trophic structure of fish, with opposite gradient patterns observed for each. Along the depth gradient, fish exhibit clear adaptive foraging strategies. As water depth increases, fish tend to forage more within their specific habitat (either benthic or pelagic), with prey types continually changing, leading to a gradual reduction in the strength of benthic–pelagic trophic coupling. This study reveals the spatial resource utilization patterns and adaptive foraging strategies of fish in the Beibu Gulf, providing deeper insights into the structure and spatial variation of food webs. It also enhances our understanding of ecosystem responses to human pressures and global changes, offering valuable perspectives for predicting these responses. Full article
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19 pages, 10645 KiB  
Article
Difference Analysis Among Six Kinds of Acceptor Splicing Sequences by the Dispersion Features of 6-mer Subsets in Human Genes
by Yangming Si, Hong Li and Xiaolong Li
Biology 2025, 14(2), 206; https://doi.org/10.3390/biology14020206 - 15 Feb 2025
Abstract
Identifying the sequence composition of different splicing modes is a challenge in current research. This study explored the dispersion distributions of 6-mer subsets in human acceptor splicing regions. Without differentiating acceptor splicing modes, obvious differences were observed across the upstream, core, and downstream [...] Read more.
Identifying the sequence composition of different splicing modes is a challenge in current research. This study explored the dispersion distributions of 6-mer subsets in human acceptor splicing regions. Without differentiating acceptor splicing modes, obvious differences were observed across the upstream, core, and downstream regions of splicing sites for 16 dispersion distributions. These findings indicate that the dispersion value of each subset can effectively characterize the compositional properties of splicing sequences. When acceptor splicing sequences were classified into common, constitutive, and alternative modes, the differences in dispersion distributions for most of the XY1 6-mer subsets were significant among the three splicing modes. Furthermore, the alternative splicing mode was classified into normal, exonic, and intronic sub-modes, the differences in dispersion distributions for most of the XY1 6-mer subsets were also significant among the three splicing sub-modes. Our results indicate that dispersion values of XY1 6-mer subsets not only revealed the sequence composition patterns of acceptor splicing regions but also effectively identified the differences in base correlation among various acceptor splicing modes. Our research provides new insights into revealing and predicting different splicing modes. Full article
(This article belongs to the Section Bioinformatics)
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24 pages, 20585 KiB  
Article
Screening and Analysis of Potential Aquaculture Spaces for Larimichthys crocea in China’s Surrounding Waters Based on Environmental Temperature Suitability
by Ling Yang, Weifeng Zhou, Xuesen Cui, Yanan Lu and Qin Liu
Biology 2025, 14(2), 205; https://doi.org/10.3390/biology14020205 - 15 Feb 2025
Abstract
This research evaluates the potential spaces of deep offshore waters for cultivating the Larimichthys crocea, analyzing ocean profile temperature data from 2000 to 2022 according to the species’ environmental temperature suitability. There are significant seasonal variations and differences in habitat distributions of [...] Read more.
This research evaluates the potential spaces of deep offshore waters for cultivating the Larimichthys crocea, analyzing ocean profile temperature data from 2000 to 2022 according to the species’ environmental temperature suitability. There are significant seasonal variations and differences in habitat distributions of different temperature ranges in China’s surrounding waters. The range of maximum living space obtained according to the tolerance temperature shows a trend of being larger in summer and smaller in winter; and the range of viable habitat space obtained based on the suitable and optimal temperature shows a trend of being smaller in summer and larger in winter. Broad areas meeting tolerance temperatures offer broad, yet impractical, site selection options. In contrast, areas with optimal temperatures are limited, which means the availability of ideal site locations is very restricted. Regions consistently within the 20–28 °C range are best for practical site selection. Year-round suitable areas are primarily found at depths of 30 to 90 m in the southern East China Sea and the South China Sea, particularly within the 40 to 50 m depth range. Water mass like the South China Sea Surface Water and the Kuroshio Surface Water consistently maintain suitable temperatures, making them ideal for aquaculture. Full article
(This article belongs to the Section Ecology)
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19 pages, 1298 KiB  
Article
Long-Term Effects of Adverse Maternal Care on Hypothalamic–Pituitary–Adrenal (HPA) Axis Function of Juvenile and Adolescent Macaques
by Kai McCormack, Sara Bramlett, Elyse L. Morin, Erin R. Siebert, Dora Guzman, Brittany Howell and Mar M. Sanchez
Biology 2025, 14(2), 204; https://doi.org/10.3390/biology14020204 - 15 Feb 2025
Abstract
Early life adversity (ELA) is a known risk factor for psychopathology, including stress-related anxiety and depressive disorders. The underlying mechanisms and developmental changes remain poorly understood. A likely underpinning is the impact of ELA on the development of stress response systems, including the [...] Read more.
Early life adversity (ELA) is a known risk factor for psychopathology, including stress-related anxiety and depressive disorders. The underlying mechanisms and developmental changes remain poorly understood. A likely underpinning is the impact of ELA on the development of stress response systems, including the hypothalamic–pituitary–adrenal (HPA) axis. Our group studied a translational ELA model of spontaneous infant maltreatment by the mother in rhesus macaques, where we used a cross-fostering design to randomly assign infant macaques to either Control or Maltreating (MALT) foster mothers at birth to examine the impact of adverse caregiving on the development of the HPA axis, while controlling for the confounding effects of heritable and prenatal factors. We previously reported higher levels of plasma and hair cortisol (CORT) across the first 6 postnatal months (equivalent to the first 2 years of life in humans) in the MALT than in the Control infants. Here, we followed the same cohort of infants longitudinally to assess the long-term developmental impact of this adverse experience on HPA axis function during the juvenile (12, 18 months) and late adolescent (~5 years) periods. For this, we collected measurements of diurnal CORT rhythm and glucocorticoid negative feedback using the dexamethasone suppression test (DST). At 12 months, we found higher diurnal CORT secretion in MALT females compared to Control females, and impaired negative feedback in response to the DST in both sexes in the MALT group. However, ELA group differences in the HPA axis function disappeared by 18 months and late adolescence, while sex differences in diurnal CORT rhythm emerged or became stronger. These results suggest that infant maltreatment causes dysregulation of the HPA axis during the first year of life, with HPA axis function normalizing later, during the pre-pubertal juvenile period and adolescence. This suggests that the impact of maltreatment on HPA axis function may be transient, at least if the adverse experience stops. Our findings are consistent with human evidence of recalibration/normalization of HPA axis function during adolescence in children that switch from adverse/deprived environments to supportive adoptive families. This research has broad implications regarding the biological processes that translate ELA to psychopathology during development and the pathways to resiliency. Full article
(This article belongs to the Section Developmental and Reproductive Biology)
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11 pages, 2668 KiB  
Article
A Novel Quantification Method for Gene-Edited Animal Detection Based on ddPCR
by Kaili Wang, Yi Ji, Cheng Peng, Xiaofu Wang, Lei Yang, Hangzhen Lan, Junfeng Xu and Xiaoyun Chen
Biology 2025, 14(2), 203; https://doi.org/10.3390/biology14020203 - 14 Feb 2025
Abstract
As gene-editing technologies continue to evolve, gene-edited products are making significant strides. These products have already been commercialized in the United States and Japan, prompting global attention to their safety and regulatory oversight. However, the detection of gene editing still relies on qPCR, [...] Read more.
As gene-editing technologies continue to evolve, gene-edited products are making significant strides. These products have already been commercialized in the United States and Japan, prompting global attention to their safety and regulatory oversight. However, the detection of gene editing still relies on qPCR, and there is a lack of quantitative detection methods to quantify gene-editing components in products. To ensure consumer safety and transparency, we developed a novel droplet digital PCR (ddPCR)-based detection method for gene-edited products. Primers and probes were designed targeting the editing sites of MSTN-edited cattle, and the method was evaluated for specificity, sensitivity, real sample testing, and detection thresholds. Our results demonstrate that this ddPCR method is highly specific, with a detection limit of 5 copies/µL, and it successfully detected MSTN edits in all 11 tested samples. Tests using both actual gene-edited cattle samples and plasmid DNA at concentrations of 5%, 1%, and 0.01% yielded consistent results, indicating the method’s suitability for real-world applications. This ddPCR assay provides a sensitive and specific tool for detecting MSTN gene-edited cattle and determining the presence of gene-edited products, offering crucial support for regulatory monitoring of gene-edited animal-derived foods. Full article
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14 pages, 2838 KiB  
Article
Protective Effects of Centella asiatica Against Senescence and Apoptosis in Epidermal Cells
by Yu Tan, Ailing Hu, Jingya Lu, Yunhai Lin, Xuejing Li, Takuji Yamaguchi, Masahiro Tabuchi, Zenji Kawakami, Yasushi Ikarashi and Hiroyuki Kobayashi
Biology 2025, 14(2), 202; https://doi.org/10.3390/biology14020202 - 14 Feb 2025
Abstract
Centella asiatica, a traditional medicinal plant, possesses potent antioxidant activity and may therefore prevent cellular aging and exert antiapoptotic effects. However, these effects remain to be fully elucidated. This study aimed to investigate the protective effects of C. asiatica extract against cellular senescence [...] Read more.
Centella asiatica, a traditional medicinal plant, possesses potent antioxidant activity and may therefore prevent cellular aging and exert antiapoptotic effects. However, these effects remain to be fully elucidated. This study aimed to investigate the protective effects of C. asiatica extract against cellular senescence and apoptosis caused by hydrogen peroxide (H2O2)-induced oxidative stress in human epidermal keratinocytes (HaCaT cells). To evaluate the effects of H2O2 and C. asiatica on HaCaT cells, we measured cell viability as a marker of cell death; reactive oxygen species (ROS), radical scavenging, superoxide dismutase (SOD), glutathione peroxidase (GPx), and catalase activities as markers of oxidative stress; senescence-associated β-galactosidase (SA-β-gal) activity as a marker of cellular senescence; and caspase-3/9 activities and apoptotic cells as markers of apoptosis. H2O2 induced cell death (decreased cell viability), oxidative stress (increased ROS activity, decreased radical scavenging, SOD, GPx, and catalase activities), cellular senescence (increased SA-β-gal activity), and apoptosis (increased early/late apoptotic cells and increased caspase-3/9 activities). C. asiatica significantly decreased all markers of H2O2-induced cell death, oxidative stress, cellular senescence, and apoptosis, suggesting its ability to prevent cellular senescence and apoptosis through its antioxidant activity. This mechanism of action may contribute to the prevention and improvement of skin aging. Full article
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22 pages, 6176 KiB  
Article
The Distribution of Microplastic Pollution and Ecological Risk Assessment of Jingpo Lake—The World’s Second Largest High-Mountain Barrier Lake
by Haitao Wang, Chen Zhao and Tangbin Huo
Biology 2025, 14(2), 201; https://doi.org/10.3390/biology14020201 - 14 Feb 2025
Abstract
To investigate the influence of factors such as tourism, agriculture, and population density on the presence of microplastic (MP) content in aquatic environments and their associated ecological risks, Jingpo Lake, a remote high-mountain lake situated away from urban areas, was selected as the [...] Read more.
To investigate the influence of factors such as tourism, agriculture, and population density on the presence of microplastic (MP) content in aquatic environments and their associated ecological risks, Jingpo Lake, a remote high-mountain lake situated away from urban areas, was selected as the research subject. This study examined the abundance, types, sizes, colors, and polymer compositions of MPs within the water body, fish, and sediments. By considering variables, including fishing practices, agricultural activities, population dynamics, and vegetation cover, an analysis was conducted to unravel the spatial and temporal distribution of MPs concerning human activities, ultimately leading to an assessment of the ecological risks posed by MP pollution. The findings revealed that the average abundance of MPs in the lake’s surface water was recorded as (304.8 ± 170.5) n/m3, while in the sediments, it averaged (162.0 ± 57.45) n/kg. Inside the digestive tracts of fish, the MP abundance was measured at 11.4 ± 5.4 n/ind. The contamination of MPs within the aquatic environment of Jingpo Lake was found to be relatively minimal. Variations in MP loads across time and space were observed, with MPs predominantly falling within the size range of small planktonic organisms (50–1000 μm). Additionally, the prevalent colors of MPs in the water samples were white or transparent, constituting approximately 55.65% of the entire MP composition. Subsequently, they were black, red, and blue. This colors distribution were consistent across MPs extracted from fish and sediment samples. The chemical compositions of the MPs predominantly comprised PE (31.83%) and PS (25.48%), followed by PP (17.56%), PA (11.84%), PET (6.71%), EVA (4.56%), and PC (2.03%). Regarding the seasonal aspect, MP concentrations were highest during summer (46.68%), followed by spring (36.75%) and autumn (16.56%). The spatial distribution of MPs within Jingpo Lake’s water body, fish, and sediments was notably influenced by human activities, as confirmed by Pearson correlation coefficients. A strong association was observed between MP levels and water quality indicators such as ammonium nitrogen (NH4-N), total phosphorus (TP), and chlorophyll-a (Chla), suggesting that human-related pollution contributed significantly to MP contamination. The diversity assessment of MP pollutants exhibited the highest variability in chemical composition (1.23 to 1.79) using the Shannon–Wiener Index. Subsequently, the diversity of colors ranged from 0.59 to 1.54, shape diversity from 0.78 to 1.30, seasonal diversity from 0.83 to 1.10, and size diversity from 0.44 to 1.01. The assessment results of ecological risk highlighted that the risk categories for MPs within the surface water, fish, and sediments of Jingpo Lake were categorized as I for the PHI and PLI and as “Minor” for the PERI. These relatively low-risk values were attributed to the predominantly low toxicity of the distributed MPs within the Jingpo Lake basin. Moreover, the results of the risk assessment were found to be interconnected with the distribution of the local population and agricultural activities around the sampling sections. Usage patterns of coastal land and population density were recognized as influential factors affecting MP loads within the water body, sediments, fish, and other components of the lake ecosystem. Full article
(This article belongs to the Special Issue Global Fisheries Resources, Fisheries, and Carbon-Sink Fisheries)
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21 pages, 8138 KiB  
Article
Assessing the Causal Relationship Between Plasma Proteins and Pulmonary Fibrosis: A Systematic Analysis Based on Mendelian Randomization
by Moxuan Han, Yan Cui, Zhengyuan Fang, He Li, Yueqi Wang, Mingwei Sima, Yan Bi and Donghui Yue
Biology 2025, 14(2), 200; https://doi.org/10.3390/biology14020200 - 14 Feb 2025
Abstract
Pulmonary fibrosis (PF) is a chronic interstitial lung disease characterized by the destruction of alveolar structures, the abnormal accumulation of extracellular matrix (ECM), and ultimately respiratory failure. Although previous studies have shown that plasma proteins play an important role in the onset and [...] Read more.
Pulmonary fibrosis (PF) is a chronic interstitial lung disease characterized by the destruction of alveolar structures, the abnormal accumulation of extracellular matrix (ECM), and ultimately respiratory failure. Although previous studies have shown that plasma proteins play an important role in the onset and progression of PF, there is currently a lack of systematic studies on causal relationships. To address the identified gap, the study employs the MR method to identify potential drug targets associated with PF. Plasma protein data (pQTL, exposure) were sourced from Ferkingstad et al. (n = 35,559), and PF-related summary statistics were obtained from the GWAS database (n = 469,126). The study integrates enrichment analysis, protein–protein interaction (PPI) networks, drug prediction, molecular docking, and single-cell sequencing to further evaluate the biological functions and pharmacological potential of the identified targets. In the MR analysis, 64 genetic loci were significantly associated with the occurrence of PF. Further reverse Mendelian analysis revealed a positive causal relationship between PF and genes such as NPTX1, IL31, and CTSE, suggesting that these proteins may play a promotive role in the onset and progression of pulmonary fibrosis. The PPI network analysis identified core genes such as CDH1, CRP, VTN, COL1A1, and MAPK8, which are involved in the key pathological processes of PF, including cell signaling, ECM remodeling, and immune responses. The drug prediction analysis identified potential drugs such as sorafenib, vitamin C, and vitamin E, and the molecular docking analysis showed good binding between the drugs and the proteins. The single-cell sequencing results showed that core genes were highly expressed in fibroblasts and alveolar type II cells, confirming their potential role in the pathogenesis of PF. This study successfully identifies 64 potential drug targets for PF, with 10 core targets considered particularly promising for clinical trials. These findings offer valuable insights into the molecular mechanisms underlying PF and open new avenues for the development of targeted therapies. This research may accelerate the development of effective PF treatments and reduce drug development costs by providing more precise and personalized approaches to managing the disease. Full article
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14 pages, 6719 KiB  
Article
Host Specificity of the Bioherbicidal Fungal Strain Paramyrothecium eichhorniae TBRC10637 for Control of Water Hyacinth
by Tanyapon Siriphan, Arm Unartngam, Wachiraya Imsabai, Piyangkun Lueangjaroenkit, Chatchai Kosawang, Hans Jørgen Lyngs Jørgensen and Jintana Unartngam
Biology 2025, 14(2), 199; https://doi.org/10.3390/biology14020199 - 14 Feb 2025
Abstract
Paramyrothecium eichhorniae TBRC10637 has been reported as a potential biocontrol agent of water hyacinth (Eichhornia crassipes) in Thailand. Despite its great potential, it remained unclear whether the strain may cause disease in other plant species, especially those sharing the same niche [...] Read more.
Paramyrothecium eichhorniae TBRC10637 has been reported as a potential biocontrol agent of water hyacinth (Eichhornia crassipes) in Thailand. Despite its great potential, it remained unclear whether the strain may cause disease in other plant species, especially those sharing the same niche as water hyacinth. Here, we examined the strain for its specificity and pathogenicity on 55 plant species from 26 families ranging from crop plants to aquatic weeds. We showed that, except for water hyacinth, P. eichhorniae TBRC10637 did not cause leaf spot or leaf blight or on any of the tested plants. Scanning electron microscopy of spores inoculated on eight plant species, including economically important plants such as maize (Zea mays) and chilli (Capsicum annuum) at 0, 24, 48, and 72 h after inoculation, showed no spore germination, except on water hyacinth. Inoculation with spore-free culture washing led to blight symptoms on leaves of water hyacinth 72 h after inoculation, suggesting that enzymes and secondary metabolites may be involved in causing the blight symptoms. Our results confirmed high specificity of P. eichhorniae TBRC10637 towards water hyacinth, paving the way to control the spread of water hyacinth effectively. Full article
(This article belongs to the Section Plant Science)
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21 pages, 1761 KiB  
Review
Unlocking Gamete Quality Through Extracellular Vesicles: Emerging Perspectives
by Notsile H. Dlamini, Alessandra Bridi, Juliano Coelho da Silveira and Jean M. Feugang
Biology 2025, 14(2), 198; https://doi.org/10.3390/biology14020198 - 13 Feb 2025
Abstract
Extracellular vesicles (EVs) are gaining recognition for their essential role in enhancing gamete quality and improving outcomes in assisted reproductive technologies. These nanosized particles, released by cells, carry proteins, lipids, and RNAs, facilitating critical cell communication and offering the potential to enhance gamete [...] Read more.
Extracellular vesicles (EVs) are gaining recognition for their essential role in enhancing gamete quality and improving outcomes in assisted reproductive technologies. These nanosized particles, released by cells, carry proteins, lipids, and RNAs, facilitating critical cell communication and offering the potential to enhance gamete maturation and improve fertilization rates. Most research on males has concentrated on seminal plasma, a complex fluid produced by the testes and accessory glands vital in modulating sperm fertility potential. The components of seminal plasma significantly affect sperm functionality, embryo survival, and placental development, making this a prominent area of interest in reproductive biology. The EVs within seminal plasma contribute to maintaining sperm membrane stability, enhancing motility, and promoting capacitation, which may influence the female reproductive tract following mating. In females, EVs have been identified in both the follicular and uterine environments, where effective embryo–maternal communication is crucial. The oviduct epithelium supports gamete transport and early embryonic development, with EVs found in oviductal fluid playing a key role in reproductive processes. These EVs support the embryo’s growth in the nutrient-rich uterine environment. These important studies underscore the significant role of EVs in transporting essential molecular compounds to gametes and embryos, leading to an enhanced understanding and potential manipulation of reproductive processes. This review aims to summarize the current research on the benefits of EVs in gamete manipulation and embryo development, highlighting their promising implications for reproductive health. Full article
(This article belongs to the Special Issue Feature Review Papers on Developmental Biology)
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9 pages, 211 KiB  
Protocol
Perioperative Neurocognitive Disorder in Individuals with a History of Traumatic Brain Injury: Protocol for a Systematic Review and Meta-Analysis
by Zeeshan Ahmad Khan, Dewan Md. Sumsuzzman, Tahiris A. Duran, Ling-Sha Ju, Christoph N. Seubert and Anatoly E. Martynyuk
Biology 2025, 14(2), 197; https://doi.org/10.3390/biology14020197 - 13 Feb 2025
Abstract
Postoperative neurocognitive disorder (PND) is a cognitive decline after general anesthesia and surgery, influenced by preexisting neurodegenerative conditions, stress, and inflammation. Traumatic brain injury (TBI) is linked to a dysregulated stress response, neuroinflammation, and cognitive issues. Patients with TBI often need extracranial surgeries [...] Read more.
Postoperative neurocognitive disorder (PND) is a cognitive decline after general anesthesia and surgery, influenced by preexisting neurodegenerative conditions, stress, and inflammation. Traumatic brain injury (TBI) is linked to a dysregulated stress response, neuroinflammation, and cognitive issues. Patients with TBI often need extracranial surgeries under general anesthesia (GA), which can increase stress, neuroinflammation, and neurodegenerative changes, raising PND risk. We will search databases like Ovid Medline and Embase for studies on cognitive function in patients with mild to moderate TBI who had extracranial surgeries under general anesthesia (GA). Screening and data extraction will be done manually and with AI-assisted tools (ASReview). Study quality will be assessed using the Newcastle–Ottawa Scale. Statistical analyses will include mean differences, odds ratios, and meta-regression, addressing heterogeneity, sensitivity, and publication bias using Stata/SE. By meta-analyzing clinical studies, we aim to determine if TBI and GA/surgery interact to induce PND. We will use various data sources, subgroup analyses, sensitivity analyses, and meta-regression to assess factors like age, gender, and type of GA/surgery. This meta-analysis will enhance our understanding of PND risks, inform clinical practices, and highlight new research directions. The systematic review is registered in PROSPERO (CRD42024510980). Full article
(This article belongs to the Special Issue Neurobiology of Traumatic Brain Injury)
14 pages, 1383 KiB  
Article
Temporal and Spatial Variation Characteristics of the Fish Biomass Particle-Size Spectra in the Shandong Province Area of the Yellow River
by Lufeng Sun, Jianglong Que, Jianqun Niu, Xiuqi Li, Junpeng Wang and Xuri Cong
Biology 2025, 14(2), 196; https://doi.org/10.3390/biology14020196 - 13 Feb 2025
Abstract
Based on the data from a continuous fishery resource survey conducted in the Shandong province area of the Yellow River from the summer and autumn of 2022 to the winter and spring of 2023, this study constructed fish biomass particle-size spectra. It compared [...] Read more.
Based on the data from a continuous fishery resource survey conducted in the Shandong province area of the Yellow River from the summer and autumn of 2022 to the winter and spring of 2023, this study constructed fish biomass particle-size spectra. It compared and analyzed the differences in the characteristics of the fish biomass particle-size spectrum parameters across four different seasons in various survey areas. The results indicated that the fish biomass particle-size spectra in the Shandong province area of the Yellow River exhibited significant seasonal and spatial variations. Overall, the shape of the Sheldon-type biomass particle-size spectra across the four seasons showed a unimodal pattern. The peak values in spring and summer ranged between 32–64 g, while in autumn, it reached 64–128 g, and in winter, it was 1024–2048 g. The dominant species shifted from small individuals in spring and summer to larger individuals in autumn and winter. The fitted curves of the standardized biomass particle-size spectra for the four seasons displayed a dome-shaped parabola, generally arranged from high to low in the biomass particle-size spectra lines from spring to winter, with winter experiencing the least external disturbance. In terms of the regional distribution, the peak particle-size classes for fish in the areas of Gaocun, Dong’a, and Gaoqing all corresponded to the particle-size class of 16–32 g, predominantly featuring small fish species such as Carassius auratus and Pseudobrama simoni. In contrast, the peak particle-size class in the estuarine waters corresponded to 512–1024 g, mainly comprising larger fish species like Cyprinus carpio, Hypophthalmichthys molitrix, and Liza haematocheila. The differences in the standardized biomass particle-size spectra among the four regions were not significant, but the curvature of the estuarine waters was the highest, indicating the least external disturbance. The abundance–biomass comparison (ABC) curve suggested that the fish community in the Shandong province area of the Yellow River is in a severely disturbed state. Full article
(This article belongs to the Special Issue Global Fisheries Resources, Fisheries, and Carbon-Sink Fisheries)
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15 pages, 4270 KiB  
Article
UVC-Induced Oxidative Stress and DNA Damage Repair Status in Head and Neck Squamous Cell Carcinoma Patients with Different Responses to Nivolumab Therapy
by Christina Papanikolaou, Panagiota Economopoulou, Niki Gavrielatou, Dimitra Mavroeidi, Amanda Psyrri and Vassilis L. Souliotis
Biology 2025, 14(2), 195; https://doi.org/10.3390/biology14020195 - 13 Feb 2025
Abstract
Accumulation of evidence highlighted the crosstalk between DNA damage repair and the immune system. Herein, we tested the hypothesis that in head and neck squamous cell carcinoma (HNSCC), the DNA repair capacity of patients’ PBMCs correlates with therapeutic response to immune checkpoint blockade. [...] Read more.
Accumulation of evidence highlighted the crosstalk between DNA damage repair and the immune system. Herein, we tested the hypothesis that in head and neck squamous cell carcinoma (HNSCC), the DNA repair capacity of patients’ PBMCs correlates with therapeutic response to immune checkpoint blockade. Following in vitro UVC irradiation, oxidative stress, apurinic/apyrimidinic (AP) lesions, endogenous/baseline DNA damage, and DNA damage repair efficiency were evaluated in three HNSCC (UM-SCC-11A, Cal-33, BB49) and two normal cell lines (RPMI-1788, 1BR-3h-T), as well as in peripheral blood mononuclear cells (PBMCs) from 15 healthy controls (HC) and 49 recurrent/metastatic HNSCC patients at baseline (8 responders, 41 non-responders to subsequent nivolumab therapy). HNSCC cell lines showed lower DNA repair efficiency, increased oxidative stress, and higher AP sites than normal ones (all p < 0.001). Moreover, patients’ PBMCs exhibited increased endogenous/baseline DNA damage, decreased DNA repair capacity, augmented oxidative stress, and higher AP sites than PBMCs from HC (all p < 0.001). Importantly, PBMCs from responders to nivolumab therapy showed lower endogenous/baseline DNA damage, higher DNA repair capacities, decreased oxidative stress, and reduced AP sites than non-responders (all p < 0.05). Together, we demonstrated that oxidative stress status and DNA repair efficiency in PBMCs from HNSCC patients are correlated with the response to immune checkpoint blockade. Full article
(This article belongs to the Section Immunology)
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23 pages, 1649 KiB  
Review
Modulation of Wnt/Beta-Catenin Pathway by Major Dietary Phytochemicals Against Breast Cancer Development
by Noah Lieb, Annalisa Tran, Martha Torres and Ajay Bommareddy
Biology 2025, 14(2), 194; https://doi.org/10.3390/biology14020194 - 13 Feb 2025
Abstract
Breast cancer is one of the most commonly diagnosed cancers and is the second leading cause of cancer-related deaths among women in the United States. Despite a decrease in mortality associated with breast cancer, there has been a steady increase in its incidence. [...] Read more.
Breast cancer is one of the most commonly diagnosed cancers and is the second leading cause of cancer-related deaths among women in the United States. Despite a decrease in mortality associated with breast cancer, there has been a steady increase in its incidence. Development of the mammary gland is normally regulated by such pathways including Wnt, Hedgehog, estrogen and Notch signaling. However, the deregulation of these pathways gives rise to tumor development, and upregulated Wnt activity along with high levels of beta-catenin is correlated with poor prognosis of breast cancer. In addition, beta-catenin-dependent Wnt signaling is enriched in triple-negative breast cancers and is associated with reduced overall survival in breast cancer patients. Various studies have investigated the ability of naturally occurring plant-based agents to reduce incidence and morbidity of breast cancer by regulating critical cell survival pathways to reverse or inhibit the occurrence of clinical disease. The present review focuses on summarizing the role of commonly consumed dietary phytochemicals and their role in regulating Wnt/β-catenin pathway against the development of breast cancer. Full article
(This article belongs to the Special Issue Advances in Biological Breast Cancer Research)
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27 pages, 11044 KiB  
Article
Periplaneta americana Extract Protects Glutamate-Induced Nerve Cell Damage by Inhibiting N-Methyl-D-Aspartate Receptor Activation
by Yongfang Zhou, Xin Yang, Canhui Hong, Tangfei Guan, Peiyun Xiao, Yongshou Yang, Chenggui Zhang and Zhengchun He
Biology 2025, 14(2), 193; https://doi.org/10.3390/biology14020193 - 13 Feb 2025
Abstract
Neurocytotoxicity elicited by N-methyl-D-aspartate receptors (NMDAR) is a substantial contributor to neurodegenerative diseases. Our current study expands on the previous findings in which Periplaneta americana (L.) extract (PAS840) was shown to protect PC12 cells from hydrogen peroxide-induced injury. In this investigation, we performed [...] Read more.
Neurocytotoxicity elicited by N-methyl-D-aspartate receptors (NMDAR) is a substantial contributor to neurodegenerative diseases. Our current study expands on the previous findings in which Periplaneta americana (L.) extract (PAS840) was shown to protect PC12 cells from hydrogen peroxide-induced injury. In this investigation, we performed LC-MS/MS and peptidomics analyses on the constituents of PAS840. Considering Alzheimer’s disease (AD) as the primary focus, we utilized network pharmacology and molecular-docking techniques to predict PAS840’s influence on AD targets. We established a glutamate (Glu)-induced PC12 cell injury model to conduct a comprehensive examination of PAS840’s effects on pivotal cellular parameters, including intracellular Ca2+ levels, superoxide dismutase (SOD) activity, malondialdehyde (MDA) content, reactive oxygen species (ROS) levels, cell apoptosis rate, mitochondrial membrane potential (MMP) levels, and the expression of key proteins such as NMDAR1, cytochrome c (Cytc), B-cell lymphoma 2 (Bcl-2), Bcl-2-associated X protein (Bax), caspase-3, tumor necrosis factor-α (TNF-α), and interleukin-6 (IL-6). The results suggest that PAS840 manifests multi-target actions, robustly attenuating NMDAR activity. It efficaciously suppresses excessive NMDAR1 activation, restricts Ca2+ influx, alleviates oxidative stress, and mitigates inflammation, thereby ameliorating neuronal cell damage. Consequently, it establishes a solid scientific foundation for further exploration of PAS840’s potential in addressing neurological diseases. Full article
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13 pages, 4606 KiB  
Article
Minimizing Stress in White Sharks: Non-Invasive Epidermal Biopsies for Isotopic and Vitellogenin Analyses
by Guia Consales, Tommaso Campani, Agata Di Noi, Marco Garofalo, Eduardo Di Marcantonio, Francesca Romana Reinero, Silvia Casini, Luigi Dallai, Emilio Sperone, Letizia Marsili and Primo Micarelli
Biology 2025, 14(2), 192; https://doi.org/10.3390/biology14020192 - 13 Feb 2025
Abstract
The great white shark (Carcharodon carcharias), a keystone predator vital to marine ecosystem stability, is increasingly exposed to anthropogenic threats, including endocrine-disrupting chemicals (EDCs). This study highlights the use of non-invasive epidermal biopsies to assess physiological and ecological parameters in 28 [...] Read more.
The great white shark (Carcharodon carcharias), a keystone predator vital to marine ecosystem stability, is increasingly exposed to anthropogenic threats, including endocrine-disrupting chemicals (EDCs). This study highlights the use of non-invasive epidermal biopsies to assess physiological and ecological parameters in 28 live specimens sampled from the Dyer Island Nature Reserve, South Africa. Epidermal tissue was analyzed for vitellogenin (Vtg), a biomarker of estrogenic exposure, while dermal tissue was used for stable isotope analyses of carbon and nitrogen, essential for understanding the feeding habitat of white sharks. Vitellogenin, typically restricted to sexually mature females, was unexpectedly detected in males and immature females, indicating significant exposure to estrogenic pollutants. This finding raises concerns about the potential reproductive and population-level impacts on this vulnerable species. Stable isotope analyses confirmed that dermal tissue alone is sufficient for trophic studies, eliminating the need for deeper muscle sampling. By demonstrating that epidermal and dermal tissues provide critical data for both biomarkers and isotopic studies, this research supports the adoption of minimally invasive techniques. Shallower biopsies reduce stress on the animals, making this method a valuable tool for conservation research and management of C. carcharias. Full article
(This article belongs to the Special Issue The Future of Marine Megafauna)
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23 pages, 1944 KiB  
Article
Automating Speech Audiometry in Quiet and in Noise Using a Deep Neural Network
by Hadrien Jean, Nicolas Wallaert, Antoine Dreumont, Gwenaelle Creff, Benoit Godey and Nihaad Paraouty
Biology 2025, 14(2), 191; https://doi.org/10.3390/biology14020191 - 12 Feb 2025
Abstract
In addition to pure-tone audiometry tests and electrophysiological tests, a comprehensive hearing evaluation includes assessing a subject’s ability to understand speech in quiet and in noise. In fact, speech audiometry tests are commonly used in clinical practice; however, they are time-consuming as they [...] Read more.
In addition to pure-tone audiometry tests and electrophysiological tests, a comprehensive hearing evaluation includes assessing a subject’s ability to understand speech in quiet and in noise. In fact, speech audiometry tests are commonly used in clinical practice; however, they are time-consuming as they require manual scoring by a hearing professional. To address this issue, we developed an automated speech recognition (ASR) system for scoring subject responses at the phonetic level. The ASR was built using a deep neural network and trained with pre-recorded French speech materials: Lafon’s cochlear lists and Dodelé logatoms. Next, we tested the performance and reliability of the ASR in clinical settings with both normal-hearing and hearing-impaired listeners. Our findings indicate that the ASR’s performance is statistically similar to manual scoring by expert hearing professionals, both in quiet and in noisy conditions. Moreover, the test–retest reliability of the automated scoring closely matches that of manual scoring. Together, our results validate the use of this deep neural network in both clinical and research contexts for conducting speech audiometry tests in quiet and in noise. Full article
(This article belongs to the Special Issue Neural Correlates of Perception in Noise in the Auditory System)
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24 pages, 1612 KiB  
Review
Evaluation of Biological Properties and Beneficial Effects for a Sustainable and Conscious Exploitation of Achatina fulica Snails
by Andrea Alogna, Alessia Liboni and Roberta Rizzo
Biology 2025, 14(2), 190; https://doi.org/10.3390/biology14020190 - 12 Feb 2025
Abstract
In recent decades, there has been significant worldwide interest in the emergence of a new invasive species known as Achatina fulica. This is due to its dangerous habits for the environment, its biological characteristics and the fact that it is the intermediate [...] Read more.
In recent decades, there has been significant worldwide interest in the emergence of a new invasive species known as Achatina fulica. This is due to its dangerous habits for the environment, its biological characteristics and the fact that it is the intermediate host of several nematode parasites, such as Angiostrongylus cantonensis. This land snail species is native to tropical African countries, but has been introduced, accidentally or deliberately, to other parts of the world to be used for different purposes and is now established in a large part of the tropics. Since the 1980s, hundreds of researchers have been interested in the beneficial properties of its mucus, ranging from the antimicrobial and anticancer properties to the use of its powdered shell as a biocatalyst. This literature review aims to objectively describe the positive and negative aspects associated with the spread of A. fulica, highlighting in particular the opportunities for the local populations deriving from a conscious exploitation of this mollusc. Full article
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14 pages, 1787 KiB  
Article
Quantifying and Predicting the Spread of Established Non-Native Fishes in Peninsular Florida, USA
by Katelyn M. Lawson, Hannah G. Talbert and Jeffrey E. Hill
Biology 2025, 14(2), 189; https://doi.org/10.3390/biology14020189 - 12 Feb 2025
Abstract
The spread of non-native species plays a substantial role in the designation of a species as invasive, yet the determination and measurement of non-native-species spread is challenging, particularly for fishes, which are limited by aquatic connectivity. Spread has been quantified for fishes in [...] Read more.
The spread of non-native species plays a substantial role in the designation of a species as invasive, yet the determination and measurement of non-native-species spread is challenging, particularly for fishes, which are limited by aquatic connectivity. Spread has been quantified for fishes in a variety of ways and exact methods vary by region and taxonomic group. In this study, we quantified fish spread in peninsular Florida and used life history traits to understand what factors contribute to the rate at which fish species spread. Using a variety of statistical analyses, we found that fast spreaders in peninsular Florida tend to have a larger body size, narrow diet, shorter time to hatch, greater salinity tolerance, and higher fecundity. However, some variables like parental care, egg diameter, and reproductive guild were the same or very similar across all established species that were included in the analyses. Predicting whether an established species will spread quickly or slowly in Florida may be more challenging than predicting whether an introduced fish species will establish, yet there is support across regions for the use of life history traits in the risk assessment process. Full article
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