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Metabolites, Volume 9, Issue 12

2019 December - 27 articles

Cover Story: The orphan endothelial cell adhesion G protein-coupled receptor (aGPCR) ADGRL4/ELTD1 regulates physiological and tumour angiogenesis. To better characterise ADGRL4/ELTD1’s role in endothelial cell biology, we silenced ADGRL4/ELTD1 using two independent siRNAs in human umbilical vein endothelial cells (HUVECS) followed by transcriptional profiling, target gene validation and metabolomics using liquid chromatography-mass spectrometry. ADGRL4/ELTD1 expression impacts core components of endothelial metabolism (ACLY, SLC25A1), affecting metabolite levels within pyrimidine, amino acid and sugar metabolic pathways, and regulates genes involved in endothelial differentiation/homeostasis (KIT) and Notch signalling (JAG1, DLL4, HES2). This work establishes a new role for ADGRL4/ELTD1 as a regulator of endothelial metabolism. View this paper
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Articles (27)

  • Article
  • Open Access
31 Citations
4,932 Views
14 Pages

Impact of Bovine Diet on Metabolomic Profile of Skim Milk and Whey Protein Ingredients

  • Jonathan B. Magan,
  • Tom F. O’Callaghan,
  • Jiamin Zheng,
  • Lun Zhang,
  • Rupasri Mandal,
  • Deirdre Hennessy,
  • Mark A. Fenelon,
  • David S. Wishart,
  • Alan L. Kelly and
  • Noel A. McCarthy

17 December 2019

The influence of bovine diet on the metabolome of reconstituted skim milk powder (SMP) and protein ingredients produced from the milk of cows fed on pasture or concentrate-based diets was investigated. Cows were randomly assigned to diets consisting...

  • Article
  • Open Access
20 Citations
6,483 Views
22 Pages

Barth Syndrome: Exploring Cardiac Metabolism with Induced Pluripotent Stem Cell-Derived Cardiomyocytes

  • Erica M. Fatica,
  • Gina A. DeLeonibus,
  • Alisha House,
  • Jillian V. Kodger,
  • Ryan W. Pearce,
  • Rohan R. Shah,
  • Liraz Levi and
  • Yana Sandlers

17 December 2019

Barth syndrome (BTHS) is an X-linked recessive multisystem disorder caused by mutations in the TAZ gene (TAZ, G 4.5, OMIM 300394) that encodes for the acyltransferase tafazzin. This protein is highly expressed in the heart and plays a significant rol...

  • Article
  • Open Access
38 Citations
5,725 Views
23 Pages

Soluble Sugar and Lipid Readjustments in the Yarrowia lipolytica Yeast at Various Temperatures and pH

  • Varvara Yu Sekova,
  • Daria I. Dergacheva,
  • Elena P. Isakova,
  • Natalya N. Gessler,
  • Vera M. Tereshina and
  • Yulia I. Deryabina

17 December 2019

Microorganisms cope with a wide range of environmental challenges using different mechanisms. Their ability to prosper at extreme ambient pH and high temperatures has been well reported, but the adaptation mechanism often remains unrevealed. In this...

  • Review
  • Open Access
91 Citations
12,229 Views
30 Pages

17 December 2019

Untargeted metabolomics (including lipidomics) is a holistic approach to biomarker discovery and mechanistic insights into disease onset and progression, and response to intervention. Each step of the analytical and statistical pipeline is crucial fo...

  • Article
  • Open Access
17 Citations
4,262 Views
15 Pages

Blood Metabolites Associate with Prognosis in Endometrial Cancer

  • Elin Strand,
  • Ingvild L. Tangen,
  • Kristine E. Fasmer,
  • Havjin Jacob,
  • Mari K. Halle,
  • Erling A. Hoivik,
  • Bert Delvoux,
  • Jone Trovik,
  • Ingfrid S. Haldorsen and
  • Camilla Krakstad
  • + 1 author

14 December 2019

Endometrial cancer has a high prevalence among post-menopausal women in developed countries. We aimed to explore whether certain metabolic patterns could be related to the characteristics of aggressive disease and poorer survival among endometrial ca...

  • Review
  • Open Access
251 Citations
15,591 Views
37 Pages

Metabolomics: A Way Forward for Crop Improvement

  • Ali Razzaq,
  • Bushra Sadia,
  • Ali Raza,
  • Muhammad Khalid Hameed and
  • Fozia Saleem

14 December 2019

Metabolomics is an emerging branch of “omics” and it involves identification and quantification of metabolites and chemical footprints of cellular regulatory processes in different biological species. The metabolome is the total metabolit...

  • Article
  • Open Access
20 Citations
5,172 Views
21 Pages

Single Spheroid Metabolomics: Optimizing Sample Preparation of Three-Dimensional Multicellular Tumor Spheroids

  • Mate Rusz,
  • Evelyn Rampler,
  • Bernhard K. Keppler,
  • Michael A. Jakupec and
  • Gunda Koellensperger

14 December 2019

Tumor spheroids are important model systems due to the capability of capturing in vivo tumor complexity. In this work, the experimental design of metabolomics workflows using three-dimensional multicellular tumor spheroid (3D MTS) models is addressed...

  • Review
  • Open Access
99 Citations
10,159 Views
16 Pages

13 December 2019

Metabolomics is the latest ‘omics’ technology and systems biology science that allows for comprehensive profiling of small-molecule metabolites in biological systems at a specific time and condition. Metabolites are cellular intermediate...

  • Article
  • Open Access
16 Citations
4,170 Views
14 Pages

Metabolomics of Small Intestine Neuroendocrine Tumors and Related Hepatic Metastases

  • Alessio Imperiale,
  • Gilles Poncet,
  • Pietro Addeo,
  • Elisa Ruhland,
  • Colette Roche,
  • Stephanie Battini,
  • A. Ercument Cicek,
  • Marie Pierrette Chenard,
  • Valérie Hervieu and
  • Izzie Jacques Namer
  • + 3 authors

11 December 2019

To assess the metabolomic fingerprint of small intestine neuroendocrine tumors (SI-NETs) and related hepatic metastases, and to investigate the influence of the hepatic environment on SI-NETs metabolome. Ninety-four tissue samples, including 46 SI-NE...

  • Article
  • Open Access
27 Citations
5,742 Views
15 Pages

Acupuncture on ST36, CV4 and KI1 Suppresses the Progression of Methionine- and Choline-Deficient Diet-Induced Nonalcoholic Fatty Liver Disease in Mice

  • Xiangjin Meng,
  • Xin Guo,
  • Jing Zhang,
  • Junji Moriya,
  • Junji Kobayashi,
  • Reimon Yamaguchi and
  • Sohsuke Yamada

9 December 2019

Nonalcoholic fatty liver disease (NAFLD) is one of the most common chronic liver diseases worldwide, and its treatment remain a constant challenge. A number of clinical trials have shown that acupuncture treatment has beneficial effects for patients...

  • Article
  • Open Access
15 Citations
5,213 Views
14 Pages

7 December 2019

DNA methyltransferase 1 (DNMT1) is responsible for the maintenance of DNA methylation patterns during cell division. Several human diseases are characterized by impaired DNMT1 gene methylation, but less is known about the factors that regulate DNMT1...

  • Article
  • Open Access
18 Citations
4,808 Views
18 Pages

Short-Term Temporal Metabolic Behavior in Halophilic Cyanobacterium Synechococcus sp. Strain PCC 7002 after Salt Shock

  • Shimpei Aikawa,
  • Atsumi Nishida,
  • Tomohisa Hasunuma,
  • Jo-Shu Chang and
  • Akihiko Kondo

5 December 2019

In response to salt stress, cyanobacteria increases the gene expression of Na+/H+ antiporter and K+ uptake system proteins and subsequently accumulate compatible solutes. However, alterations in the concentrations of metabolic intermediates functiona...

  • Article
  • Open Access
40 Citations
5,116 Views
15 Pages

Genomic Survey, Transcriptome, and Metabolome Analysis of Apocynum venetum and Apocynum hendersonii to Reveal Major Flavonoid Biosynthesis Pathways

  • Gang Gao,
  • Ping Chen,
  • Jikang Chen,
  • Kunmei Chen,
  • Xiaofei Wang,
  • Aminu Shehu Abubakar,
  • Ning Liu,
  • Chunming Yu and
  • Aiguo Zhu

5 December 2019

Apocynum plants, especially A. venetum and A. hendersonii, are rich in flavonoids. In the present study, a whole genome survey of the two species was initially carried out to optimize the flavonoid biosynthesis-correlated gene mining. Then, the metab...

  • Article
  • Open Access
17 Citations
4,159 Views
19 Pages

Metabolomic Profiling Reveals the Difference on Reproductive Performance between High and Low Lactational Weight Loss Sows

  • Liang Hu,
  • Lianqiang Che,
  • Chen Wu,
  • Mihai Victor Curtasu,
  • Fali Wu,
  • Zhengfeng Fang,
  • Yan Lin,
  • Shengyu Xu,
  • Bin Feng and
  • De Wu
  • + 3 authors

4 December 2019

Sows suffering excess weight loss during lactation may delay weaning to estrus interval (WEI) and have a detrimental effect on subsequent reproductive performance, however, the underlying mechanism is not completely clear. Therefore, the goal of this...

  • Article
  • Open Access
34 Citations
11,597 Views
14 Pages

Degradation of Extracellular NAD+ Intermediates in Cultures of Human HEK293 Cells

  • Veronika Kulikova,
  • Konstantin Shabalin,
  • Kirill Nerinovski,
  • Alexander Yakimov,
  • Maria Svetlova,
  • Ljudmila Solovjeva,
  • Andrey Kropotov,
  • Mikhail Khodorkovskiy,
  • Marie E. Migaud and
  • Andrey Nikiforov
  • + 1 author

29 November 2019

Nicotinamide adenine dinucleotide (NAD) is an essential redox carrier, whereas its degradation is a key element of important signaling pathways. Human cells replenish their NAD contents through NAD biosynthesis from extracellular precursors. These pr...

  • Article
  • Open Access
27 Citations
4,243 Views
22 Pages

Insights on Salt Tolerance of Two Endemic Limonium Species from Spain

  • Sara González-Orenga,
  • P. Pablo Ferrer-Gallego,
  • Emilio Laguna,
  • M. Pilar López-Gresa,
  • Maria P. Donat-Torres,
  • Mercedes Verdeguer,
  • Oscar Vicente and
  • Monica Boscaiu

29 November 2019

We have analysed the salt tolerance of two endemic halophytes of the genus Limonium, with high conservation value. In the present study, seed germination and growth parameters as well as different biomarkers—photosynthetic pigments, mono and di...

  • Article
  • Open Access
40 Citations
6,928 Views
15 Pages

Mucosal Metabolomic Profiling and Pathway Analysis Reveal the Metabolic Signature of Ulcerative Colitis

  • Joseph Diab,
  • Terkel Hansen,
  • Rasmus Goll,
  • Hans Stenlund,
  • Einar Jensen,
  • Thomas Moritz,
  • Jon Florholmen and
  • Guro Forsdahl

27 November 2019

The onset of ulcerative colitis (UC) is characterized by a dysregulated mucosal immune response triggered by several genetic and environmental factors in the context of host–microbe interaction. This complexity makes UC ideal for metabolomic st...

  • Article
  • Open Access
18 Citations
7,316 Views
15 Pages

Ammonium Fluoride as Suitable Additive for HILIC-Based LC-HRMS Metabolomics

  • Luca Narduzzi,
  • Anne-Lise Royer,
  • Emmanuelle Bichon,
  • Yann Guitton,
  • Corinne Buisson,
  • Bruno Le Bizec and
  • Gaud Dervilly-Pinel

27 November 2019

Hydrophilic Interaction Liquid Chromatography (HILIC) chromatography is widely applied in metabolomics as a complementary strategy to reverse phase chromatography. Nevertheless, it still faces several issues in terms of peak shape and compounds ioniz...

  • Article
  • Open Access
39 Citations
6,896 Views
18 Pages

Untargeted Metabolomics-Based Screening Method for Inborn Errors of Metabolism using Semi-Automatic Sample Preparation with an UHPLC- Orbitrap-MS Platform

  • Ramon Bonte,
  • Michiel Bongaerts,
  • Serwet Demirdas,
  • Janneke G. Langendonk,
  • Hidde H. Huidekoper,
  • Monique Williams,
  • Willem Onkenhout,
  • Edwin H. Jacobs,
  • Henk J. Blom and
  • George J. G. Ruijter

26 November 2019

Routine diagnostic screening of inborn errors of metabolism (IEM) is currently performed by different targeted analyses of known biomarkers. This approach is time-consuming, targets a limited number of biomarkers and will not identify new biomarkers....

  • Communication
  • Open Access
21 Citations
10,376 Views
18 Pages

Metabolic Fingerprint of Chronic Obstructive Lung Diseases: A New Diagnostic Perspective

  • Dimitris Tsoukalas,
  • Evangelia Sarandi,
  • Maria Thanasoula,
  • Anca Oana Docea,
  • Gerasimos Tsilimidos,
  • Daniela Calina and
  • Aristides Tsatsakis

26 November 2019

Chronic obstructive lung disease (COLD) is a group of airway diseases, previously known as emphysema and chronic bronchitis. The heterogeneity of COLD does not allow early diagnosis and leads to increased morbidity and mortality. The increasing numbe...

  • Article
  • Open Access
20 Citations
6,208 Views
13 Pages

ADGRL4/ELTD1 Silencing in Endothelial Cells Induces ACLY and SLC25A1 and Alters the Cellular Metabolic Profile

  • David M. Favara,
  • Christos E. Zois,
  • Syed Haider,
  • Elisabete Pires,
  • Helen Sheldon,
  • James McCullagh,
  • Alison H. Banham and
  • Adrian L. Harris

25 November 2019

Adhesion G Protein-Coupled Receptor L4 (ADGRL4/ELTD1) is an endothelial cell adhesion G protein-coupled receptor (aGPCR) which regulates physiological and tumour angiogenesis, providing an attractive target for anti-cancer therapeutics. To date, ADGR...

  • Article
  • Open Access
7 Citations
3,611 Views
14 Pages

1H-NMR Urinary Metabolic Profile, A Promising Tool for the Management of Infants with Human Cytomegalovirus-Infection

  • Marie Antoinette Frick,
  • Ignasi Barba,
  • Marina Fenoy-Alejandre,
  • Paula López-López,
  • Fernando Baquero-Artigao,
  • Paula Rodríguez-Molino,
  • Antoni Noguera-Julian,
  • Marta Nicolás-López,
  • Asunción de la Fuente-Juárez and
  • Pere Soler-Palacín
  • + 3 authors

25 November 2019

Congenital human cytomegalovirus (HCMV) infection is the most common mother-to-child transmitted infection in the developed world. Certain aspects of its management remain a challenge. Urinary metabolic profiling is a promising tool for use in pediat...

  • Review
  • Open Access
40 Citations
7,233 Views
16 Pages

Experimental Design and Sample Preparation in Forest Tree Metabolomics

  • Ana M. Rodrigues,
  • Ana I. Ribeiro-Barros and
  • Carla António

22 November 2019

Appropriate experimental design and sample preparation are key steps in metabolomics experiments, highly influencing the biological interpretation of the results. The sample preparation workflow for plant metabolomics studies includes several steps b...

  • Article
  • Open Access
5 Citations
3,575 Views
10 Pages

Detecting Pulmonary Oxygen Toxicity Using eNose Technology and Associations between Electronic Nose and Gas Chromatography–Mass Spectrometry Data

  • Thijs T. Wingelaar,
  • Paul Brinkman,
  • Rianne de Vries,
  • Pieter-Jan A.M. van Ooij,
  • Rigo Hoencamp,
  • Anke-Hilse Maitland-van der Zee,
  • Markus W. Hollmann and
  • Rob A. van Hulst

22 November 2019

Exposure to oxygen under increased atmospheric pressures can induce pulmonary oxygen toxicity (POT). Exhaled breath analysis using gas chromatography–mass spectrometry (GC–MS) has revealed that volatile organic compounds (VOCs) are associ...

  • Case Report
  • Open Access
8 Citations
3,773 Views
7 Pages

Serum Steroid Profiling by Liquid Chromatography–Tandem Mass Spectrometry for the Rapid Confirmation and Early Treatment of Congenital Adrenal Hyperplasia: A Neonatal Case Report

  • Ilaria Cicalini,
  • Stefano Tumini,
  • Paola Irma Guidone,
  • Damiana Pieragostino,
  • Mirco Zucchelli,
  • Sara Franchi,
  • Gabriele Lisi,
  • Pierluigi Lelli Chiesa,
  • Liborio Stuppia and
  • Claudia Rossi
  • + 1 author

21 November 2019

Congenital adrenal hyperplasia (CAH) describes a group of autosomal recessive disorders of steroid biosynthesis, in 95% of cases due to 21-hydroxylase deficiency. The resulting hormonal imbalances lead to increased 17-hydroxyprogesterone and androgen...

  • Review
  • Open Access
115 Citations
28,959 Views
14 Pages

Glucose-6 Phosphate, a Central Hub for Liver Carbohydrate Metabolism

  • Fabienne Rajas,
  • Amandine Gautier-Stein and
  • Gilles Mithieux

20 November 2019

Cells efficiently adjust their metabolism according to the abundance of nutrients and energy. The ability to switch cellular metabolism between anabolic and catabolic processes is critical for cell growth. Glucose-6 phosphate is the first intermediat...

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Metabolites - ISSN 2218-1989