Genome-Wide Identification and Expression Analysis of the TCP Gene Family Related to Developmental and Abiotic Stress in Ginger
Abstract
:1. Introduction
2. Results
2.1. Identification and Characterization of TCP Gene Family in Ginger
2.2. Chromosomal Localization Analysis of TCP Gene in Ginger
2.3. Evolutionary Analysis of Ginger TCP Gene Family
2.4. ZoTCP Gene Structure and Conserved Motif Analysis
2.5. Evolutionary Analysis of ZoTCP Gene
2.6. Cis-Acting Element Analysis
2.7. ZoTCP Gene Replication Events and Collinearity Analysis
2.8. Expression Analysis of ZoTCP in Different Tissues of Ginger
2.9. Analysis of ZoTCP Expression Patterns under Cold, Drought, Heat, Salt, High-Temperature, and Intense Light Stresses
3. Discussion
4. Materials and Methods
4.1. Plant Materials and Treatments
4.2. Identification and Physicochemical Properties Analysis of TCP Gene Family Members in Ginger
4.3. Multiple Sequence Alignment and Phylogenetic Tree Construction of Ginger TCP Protein
4.4. Analysis of TCP Gene Structure and Conserved Elements in Ginger
4.5. Analysis of Cis-Acting Elements of Ginger TCP Gene
4.6. Collinearity Analysis
4.7. ZoTCP Gene Expression and qRT-PCR Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Gene Name | Gene ID | Chromosome | Localization (bp) | Animo Acid Number | Molecular Weight (kD) | PI |
---|---|---|---|---|---|---|
ZoTCP1 | ZOFF_071857 | Chr.06 | 8,518,591–8,519,676 (+) | 361 | 38.71 | 6.72 |
ZoTCP2 | ZOFF_071376 | Chr.06 | 12,551,671–12,552,432 (+) | 253 | 25.82 | 9.16 |
ZoTCP3 | ZOFF_058948 | Chr.06 | 62,385,964–62,387,566 (−) | 464 | 49.34 | 9.38 |
ZoTCP4 | ZOFF_070666 | Chr.06 | 111,911,935–111,913,806 (−) | 565 | 61.24 | 6.73 |
ZoTCP5 | ZOFF_055205 | Chr.06 | 129,782,255–129,783,586 (−) | 443 | 48.45 | 7.00 |
ZoTCP6 | ZOFF_035032 | Chr.08 | 6,982,140–6,983,267 (−) | 375 | 39.81 | 8.47 |
ZoTCP7 | ZOFF_033278 | Chr.10 | 10,437,715–10,439,388 (+) | 501 | 54.58 | 6.68 |
ZoTCP8 | ZOFF_009476 | Chr.10 | 19,251,872–19,254,729 (−) | 622 | 66.94 | 8.24 |
ZoTCP9 | ZOFF_010045 | Chr.10 | 127,022,793–127,023,695 (−) | 300 | 30.89 | 5.77 |
ZoTCP10 | ZOFF_009968 | Chr.10 | 127,027,323–127,028,273 (−) | 316 | 32.45 | 6.01 |
ZoTCP11 | ZOFF_005937 | Chr.12 | 59,942,137–59,948,621 (+) | 323 | 33.88 | 7.21 |
ZoTCP12 | ZOFF_075892 | Chr.12 | 108,521,821–108,522,456 (+) | 211 | 23.49 | 8.83 |
ZoTCP13 | ZOFF_038801 | Chr.14 | 122,725,201–122,726,148 (−) | 364 | 39.35 | 7.17 |
ZoTCP14 | ZOFF_035356 | Chr.14 | 2,292,226–2,293,320 (−) | 315 | 32.74 | 7.90 |
ZoTCP15 | ZOFF_068839 | Chr.16 | 28,238,917–28,239,843 (+) | 308 | 33.20 | 6.87 |
ZoTCP16 | ZOFF_008749 | Chr.18 | 64,415,581–64,416,537 (+) | 318 | 33.08 | 6.67 |
ZoTCP17 | ZOFF_057997 | Chr.18 | 137,811,656–137,812,966 (+) | 436 | 47.31 | 8.95 |
ZoTCP18 | ZOFF_000424 | Chr.20 | 159,161,052–159,166,863 (+) | 330 | 37.05 | 8.63 |
ZoTCP19 | ZOFF_047522 | Chr.22 | 52,215,302–52,229,031 (−) | 713 | 78.70 | 8.34 |
ZoTCP20 | ZOFF_003424 | Chr.22 | 165,907,234–165,908,193 (−) | 319 | 33.27 | 6.84 |
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Jiang, Y.; Jiang, D.; Xia, M.; Gong, M.; Li, H.; Xing, H.; Zhu, X.; Li, H.-L. Genome-Wide Identification and Expression Analysis of the TCP Gene Family Related to Developmental and Abiotic Stress in Ginger. Plants 2023, 12, 3389. https://doi.org/10.3390/plants12193389
Jiang Y, Jiang D, Xia M, Gong M, Li H, Xing H, Zhu X, Li H-L. Genome-Wide Identification and Expression Analysis of the TCP Gene Family Related to Developmental and Abiotic Stress in Ginger. Plants. 2023; 12(19):3389. https://doi.org/10.3390/plants12193389
Chicago/Turabian StyleJiang, Yajun, Dongzhu Jiang, Maoqin Xia, Min Gong, Hui Li, Haitao Xing, Xuedong Zhu, and Hong-Lei Li. 2023. "Genome-Wide Identification and Expression Analysis of the TCP Gene Family Related to Developmental and Abiotic Stress in Ginger" Plants 12, no. 19: 3389. https://doi.org/10.3390/plants12193389