Genetic Basis of Resistance to Warrior (-) Yellow Rust Race at the Seedling Stage in Current Central and Northern European Winter Wheat Germplasm
Abstract
:1. Introduction
2. Results
2.1. Phenotypic Evaluation for Warrior (-) Yellow Rust
2.2. GWAS for Resistance to Warrior (-) Yellow Rust at Seedling Stage
2.3. Correspondence to Published Yr Loci
3. Discussion
4. Materials and Methods
4.1. Seedling Stage Yellow Rust Assessment
4.2. Statistical Analysis
4.3. SNP Genotyping, Population Structure, and LD Analyses
4.4. Association Mapping
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Pathotype | Marker | Chromosome | Position (bp) | R2 | SNPs | Number of Accessions with Resistant Allele | Number of Accessions with Susceptible Allele | Number of Accessions with Missing Alleles | IT | Effect | p-Value |
---|---|---|---|---|---|---|---|---|---|---|---|
Warrior (-) FS 53/20 | |||||||||||
Kukri_c5357_323 | 1B | 637,621,766 | 0.051 | G/T | 18 | 210 | 1 | 5.00/6.24 | 1.20 | 0.0008 | |
Tdurum_contig13879_352 | 1B | 680,162,719 | 0.051 | A/G | 193 | 34 | 2 | 6.00/6.91 | 0.91 | 0.0009 | |
BS00098033_51 | 2A | 778,724,092 | 0.055 | C/T | 19 | 205 | 5 | 5.02/6.26 | 1.16 | 0.0005 | |
CAP12_c703_150 | 5B | 550,377,847 | 0.053 | C/T | 95 | 126 | 8 | 5.89/6.38 | 0.76 | 0.0010 | |
BS00062869_51 | 7A | 17,454,693 | 0.061 | A/G | 21 | 205 | 3 | 5.06/6.27 | 1.14 | 0.0004 | |
Warrior (-) G 23/19 | |||||||||||
Excalibur_c17489_804 | 5B | 670,829,789 | 0.052 | C/T | 104 | 120 | 5 | 6.48/6.01 | 0.81 | 0.0008 |
SNP/IT | Kukri_c5357_323 | Tdurum_contig13879_352 | BS00098033_51 | CAP12_c703_150 | BS00062869_51 | Excalibur_c17489_804 | IT Against Warrior (-)FS 53/20 | IT Against Warrior (-) G23/19 |
---|---|---|---|---|---|---|---|---|
Line/Allele | G | A | C | C | A | T | ||
TS049 | X | X | X | 3.67 | 2.33 | |||
TS111 | X | X | X | X | X | 1.67 | 4.33 | |
TS185 | X | X | X | X | X | 2.33 | 2.67 | |
TS229 | X | X | X | X | 2.01 | 2.33 |
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Shahinnia, F.; Mohler, V.; Hartl, L. Genetic Basis of Resistance to Warrior (-) Yellow Rust Race at the Seedling Stage in Current Central and Northern European Winter Wheat Germplasm. Plants 2023, 12, 420. https://doi.org/10.3390/plants12030420
Shahinnia F, Mohler V, Hartl L. Genetic Basis of Resistance to Warrior (-) Yellow Rust Race at the Seedling Stage in Current Central and Northern European Winter Wheat Germplasm. Plants. 2023; 12(3):420. https://doi.org/10.3390/plants12030420
Chicago/Turabian StyleShahinnia, Fahimeh, Volker Mohler, and Lorenz Hartl. 2023. "Genetic Basis of Resistance to Warrior (-) Yellow Rust Race at the Seedling Stage in Current Central and Northern European Winter Wheat Germplasm" Plants 12, no. 3: 420. https://doi.org/10.3390/plants12030420