Study of CaDreb2c and CaDreb2h Gene Sequences and Expression in Chickpea (Cicer arietinum L.) Cultivars Growing in Northern Kazakhstan under Drought
Abstract
:1. Introduction
2. Results and Discussion
2.1. Selection of Chickpea Cultivars for Drought Experiments Based on Duration of the Growing Season and Crop Yield
2.2. CaDreb2c and CaDreb2h Gene Sequences in the Different Used Chickpea C. arietinum Cultivars
- Twenty were identical for deposited c in GenBank chickpeas CaDreb2c gene sequence (XM_012713080.2, Indian cultivar CDC Frontier) (#2, 4, 20, 30, 37, 43, 52, 53, 57, 68, 73, 74, 75, 77, 94, 95, 114, 117, 118, and 120).
- Four differed by one synonymous substitution (T on C, 651 bp) from the deposited CaDreb2c gene sequence of cultivar CDC Frontier (#10, 18, 35, and 48) (Figure 3).
- Five differed by one synonymous substitution (C on T, 910 bp) and two non-synonymous substitutions (G on T, 790 bp; G on A, 940 bp) from the deposited in GenBank CaDreb2c gene sequence of cultivar CDC Frontier (#6, 8, 58, 64, and 119) (Figure 4). Using a search for conserved domains within a protein sequence (CD-search, National Center for Biotechnology Information, NCBI, https://www.ncbi.nlm.nih.gov, accessed on 23 July 2024), we found DNA-binding domains in plant proteins such as APETALA2 and EREBPs [19]. This domain is located closer to the beginning of the gene (interval 85–145 aa, E-value 3.74 × 10−34). Thus, the found substitutions do not change the structure of the main DNA-binding domain.
2.3. Chickpeas C. arietinum Cultivar Resistance to Drought in Experimental Conditions
2.4. CaDreb2c and CaDreb2h Gene Expression in the Different Used Chickpea C. arietinum Cultivars in Normal and Drought Conditions
3. Materials and Methods
3.1. Plant Material
3.2. Drought Stress Experiments
3.3. Nucleic Acid Purification and Real-Time Quantitative PCR (RT-qPCR)
3.4. Statistical Analysis
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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Kiselev, K.V.; Ogneva, Z.V.; Dubrovina, A.S.; Gabdola, A.Z.; Khassanova, G.Z.; Jatayev, S.A. Study of CaDreb2c and CaDreb2h Gene Sequences and Expression in Chickpea (Cicer arietinum L.) Cultivars Growing in Northern Kazakhstan under Drought. Plants 2024, 13, 2066. https://doi.org/10.3390/plants13152066
Kiselev KV, Ogneva ZV, Dubrovina AS, Gabdola AZ, Khassanova GZ, Jatayev SA. Study of CaDreb2c and CaDreb2h Gene Sequences and Expression in Chickpea (Cicer arietinum L.) Cultivars Growing in Northern Kazakhstan under Drought. Plants. 2024; 13(15):2066. https://doi.org/10.3390/plants13152066
Chicago/Turabian StyleKiselev, Konstantin V., Zlata V. Ogneva, Alexandra S. Dubrovina, Ademi Zh. Gabdola, Gulmira Zh. Khassanova, and Satyvaldy A. Jatayev. 2024. "Study of CaDreb2c and CaDreb2h Gene Sequences and Expression in Chickpea (Cicer arietinum L.) Cultivars Growing in Northern Kazakhstan under Drought" Plants 13, no. 15: 2066. https://doi.org/10.3390/plants13152066