Genome-Wide Analysis of the Histone Modification Gene (HM) Family and Expression Investigation during Anther Development in Rice (Oryza sativa L.)
Abstract
:1. Introduction
2. Results
2.1. Characterization of the HM Gene Family in the Rice Genome
2.2. Chromosome Distribution of OsHM Members in the Rice Genome
2.3. Gene Structure, Conserved Motifs, and Phylogenetic Analysis of OsHM Gene Family Members
2.4. OsHM Gene Duplication Events in the Rice Genome
2.5. Cis-Regulatory Elements Analysis of OsHMs
2.6. Tissue-Specific Expression Pattern Analysis of OsHMs in Rice
2.7. Abiotic Stress Response Analysis of OsHMs in Rice
2.8. Expression Pattern Analysis of OsHMs in Rice Anthers Development
2.9. Expression Analysis of 14 Key Anther Development Genes at Different Anther Development Stages
2.10. Subcellular Localization Analysis of OsSDG713 and OsSDG727
3. Discussion
4. Materials and Methods
4.1. Identification of OsHMs in the Rice Genome
4.2. Gene Structure, Conserved Motif Analysis of OsHMs, and Phylogenetic Relationships of OsHM Genes
4.3. Chromosomal Localization of Rice OsHM Genes
4.4. Cis-Acting Element Analysis
4.5. Expression Analysis of OsHMs in Different Tissue Parts, Different Anther Development Stages, and Different Stress Conditions in Rice
4.6. RT-qPCR Expression Analysis of OsHM Genes
4.7. Plasmid Construction and Subcellular Localization Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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Species | HAC | HAG | HAF | HAM | HDMA | JMJ | PRMT | SDG | HDT | HDA | SRT |
---|---|---|---|---|---|---|---|---|---|---|---|
Rice | 3 | 26 | 1 | 2 | 9 | 14 | 8 | 47 | 2 | 16 | 2 |
Arabidopsis | 5 | 3 | 2 | 2 | 4 | 20 | 7 | 41 | 4 | 12 | 2 |
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Huang, Y.; Liu, J.; Cheng, L.; Xu, D.; Liu, S.; Hu, H.; Ling, Y.; Yang, R.; Zhang, Y. Genome-Wide Analysis of the Histone Modification Gene (HM) Family and Expression Investigation during Anther Development in Rice (Oryza sativa L.). Plants 2024, 13, 2496. https://doi.org/10.3390/plants13172496
Huang Y, Liu J, Cheng L, Xu D, Liu S, Hu H, Ling Y, Yang R, Zhang Y. Genome-Wide Analysis of the Histone Modification Gene (HM) Family and Expression Investigation during Anther Development in Rice (Oryza sativa L.). Plants. 2024; 13(17):2496. https://doi.org/10.3390/plants13172496
Chicago/Turabian StyleHuang, Yongxiang, Jiawei Liu, Long Cheng, Duo Xu, Sijia Liu, Hanqiao Hu, Yu Ling, Rongchao Yang, and Yueqin Zhang. 2024. "Genome-Wide Analysis of the Histone Modification Gene (HM) Family and Expression Investigation during Anther Development in Rice (Oryza sativa L.)" Plants 13, no. 17: 2496. https://doi.org/10.3390/plants13172496