Molecular Mechanisms of DNA Damage in Mammalian Cells

A special issue of Biomolecules (ISSN 2218-273X). This special issue belongs to the section "Biomacromolecules: Nucleic Acids".

Deadline for manuscript submissions: closed (18 September 2021) | Viewed by 4452

Special Issue Editors


E-Mail Website
Guest Editor
Department of Oncology and Metabolism, University of Sheffield, Sheffield, UK
Interests: DNA; myosin; actin; transcription; DNA damage; molecular motors; mechanobiology; imaging

E-Mail Website
Guest Editor
Department of Oncology and Metabolism, University of Sheffield, Sheffield, UK
Interests: DNA; myosin; actin; transcription; DNA damage

Special Issue Information

Dear Colleagues,

This Special Issue of Biomolecules (Impact Factor: 4.694) will cover all aspects of DNA damage covering the causes, types of damage and repair mechanisms.

The eukaryotic genome is continuously attacked by multiple factors causing a variety of DNA lesions. This includes exogenous agents, such as ultraviolet light, ionizing radiation and chemotherapeutic agents, and endogenous factors, such as the intracellular reactive oxygen species and alkylating agents. This leads to alterations in the DNA structure taking the form of nucleotide and base modifications, crosslinking, single-strand breaks and double-strand breaks.

Eukaryotic cells have evolved genome repair and surveillance mechanisms to specifically respond to the form of DNA damage. These fall under the pathways of base excision, nuclear excision, homology-directed and DNA mismatch repair, along with non-homologous end joining, amongst others. These pathways respond to the damage, regulate the cell cycle, alter chromatin and enable repair. If the damage exceeds the cell’s capability to repair then apoptosis pathways will be activated leading to cell death. Many classical chemotherapeutics take advantage of this response by inducing high levels of DNA damage that lead to cell death. Nevertheless, failure of this mechanism promotes genome instability which is linked to cancer development and other pathologies.

This Special Issue aims to collect a broad range of original and review articles focused on the mechanisms that lead to DNA damage and how it is repaired.

Dr. Christopher P. Toseland
Dr. Ália dos Santos
Guest Editors

Manuscript Submission Information

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Keywords

  • DNA Damage
  • DNA Repair
  • Eukaryotic Genome
  • Molecular Mechanisms

Published Papers (1 paper)

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Research

15 pages, 3187 KiB  
Article
A Targeted and Tuneable DNA Damage Tool Using CRISPR/Cas9
by Ioannis Emmanouilidis, Natalia Fili, Alexander W. Cook, Yukti Hari-Gupta, Ália dos Santos, Lin Wang, Marisa L. Martin-Fernandez, Peter J. I. Ellis and Christopher P. Toseland
Biomolecules 2021, 11(2), 288; https://doi.org/10.3390/biom11020288 - 15 Feb 2021
Cited by 5 | Viewed by 3939
Abstract
Mammalian cells are constantly subjected to a variety of DNA damaging events that lead to the activation of DNA repair pathways. Understanding the molecular mechanisms of the DNA damage response allows the development of therapeutics which target elements of these pathways. Double-strand breaks [...] Read more.
Mammalian cells are constantly subjected to a variety of DNA damaging events that lead to the activation of DNA repair pathways. Understanding the molecular mechanisms of the DNA damage response allows the development of therapeutics which target elements of these pathways. Double-strand breaks (DSB) are particularly deleterious to cell viability and genome stability. Typically, DSB repair is studied using DNA damaging agents such as ionising irradiation or genotoxic drugs. These induce random lesions at non-predictive genome sites, where damage dosage is difficult to control. Such interventions are unsuitable for studying how different DNA damage recognition and repair pathways are invoked at specific DSB sites in relation to the local chromatin state. The RNA-guided Cas9 (CRISPR-associated protein 9) endonuclease enzyme is a powerful tool to mediate targeted genome alterations. Cas9-based genomic intervention is attained through DSB formation in the genomic area of interest. Here, we have harnessed the power to induce DSBs at defined quantities and locations across the human genome, using custom-designed promiscuous guide RNAs, based on in silico predictions. This was achieved using electroporation of recombinant Cas9-guide complex, which provides a generic, low-cost and rapid methodology for inducing controlled DNA damage in cell culture models. Full article
(This article belongs to the Special Issue Molecular Mechanisms of DNA Damage in Mammalian Cells)
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