The Interactions between Phages and Their Hosts

A special issue of Pathogens (ISSN 2076-0817).

Deadline for manuscript submissions: closed (1 March 2024) | Viewed by 3325

Special Issue Editors

Department of Genetics and Genome Biology, University of Leicester, Leicester LE1 7RH, UK
Interests: isolation; characterisation of phages; Good Laboratory Practice (GLP) implementation; development of molecular diagnostics (phage-based assays)

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Guest Editor
Department of Life Sciences, University of Lincoln, Lincoln LN6 7TS, UK
Interests: molecular mechanism underlying phage-host interactions; protein structures of receptor binding proteins

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Guest Editor
Institute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Science, Jinan 250100, China
Interests: phage ecology; phage product development for diseases control and welfare of livestock
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Centre for Epidemiology and Planetary Health, Department of Veterinary and Animal Science, Scotland's Rural College, Inverness IV2 5NA, UK
Interests: therapeutic phage development for human nosocomial and zoonotic bacteria; expertise in phage cocktail optimisations; formulations and efficacy testing in various in vitro; ex vivo and in vivo infection models

Special Issue Information

Dear Colleagues,

Phages (viruses that infect bacteria) are very specific to their host bacteria. There is an increasing understanding that eukaryotic cells such as human cells are not completely immune to phages. In the context of tackling antimicrobial resistance (AMR), one of the major global health problems of the 21st century, the exploitation of phages for therapeutic purposes has never been so important. One key aspect in the application of phages in biotechnology and medicine is a foundational understanding of phage–bacteria interactions and, to a large extent, interactions with human and animal cell lines.

We appreciate that there are many hurdles to overcome before the therapeutical potential of phages can be fully established. One of the barriers to therapeutic phage development is the lack of sufficient scientific evidence of in vivo phage–host interactions. It is also becoming increasing clear that parameters obtained from in vitro assays are difficult to extrapolate in in vivo settings. Obviously, more effort is needed to study phage–host interactions with model systems that can translate preclinical findings into what will happen in humans.

This Special Issue will focus on the ongoing progress and novel discoveries in the field of phage–host interactions to accelerate phage therapeutic applications and maintain the momentum of phage research. Understanding phage–host interactions paves the way for the emerging subject of phage pharmacology.

In this Special Issue, we welcome contributions from the following aspects:

  1. The molecular mechanism of the first step of phage–bacteria interactions: the adsorption of phages onto a bacterial surface. The adsorption process involves an interaction between the receptor-binding proteins (RBPs) located on the phage tails and phage receptors on the bacterial surface, including the outer membrane proteins, lipopolysaccharides, components of bacterial capsules, pili and flagella, etc.
  2. Phage–host arms races, such as phages producing anti-restriction and/or anti-CRISPR molecules to counterattack bacterial defence systems to prevent phage infection, the phage take-over of bacterial transcription, etc.
  3. The mechanism underlying phage particle assembly and the lysis of host cells.
  4. Observational or mechanistic studies on phage life cycles and pre-clinical studies on phage therapy.
  5. The impact of phage–eukaryotic interactions on phage–bacteria dynamics.
  6. Phage-resistant bacteria.
  7. Phage pharmacokinetics and phage pharmacodynamics.
  8. Considerations of technical advancements in phage product development. 

Dr. Jinyu Shan
Dr. Ahmed Dowah
Dr. Yuqing Liu
Dr. Janet Nale
Guest Editors

Manuscript Submission Information

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Keywords

  • phage–host interactions
  • phage receptors
  • receptor-binding proteins
  • co-evolution
  • phage therapy
  • eukaryotic cells
  • pharmocokinetics
  • pharmacodyanmics
  • phage life cycles

Published Papers (2 papers)

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Research

13 pages, 1847 KiB  
Article
Valp1, a Newly Identified Temperate Phage Facilitating Coexistence of Lysogenic and Non-Lysogenic Populations of Vibrio anguillarum
by Manuel Arce, Guillermo Venegas, Karla Paez, Simone Latz, Paola Navarrete, Mario Caruffo, Carmen Feijoo, Katherine García and Roberto Bastías
Pathogens 2024, 13(4), 285; https://doi.org/10.3390/pathogens13040285 - 27 Mar 2024
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Abstract
Vibrio anguillarum is a pathogen for several fish and shellfish species. Its ecology is influenced by diverse factors, including bacteriophages. Here, we identify and characterize a new temperate bacteriophage (Valp1) of V. anguillarum. Valp1 is a myovirus with a 60 nm head [...] Read more.
Vibrio anguillarum is a pathogen for several fish and shellfish species. Its ecology is influenced by diverse factors, including bacteriophages. Here, we identify and characterize a new temperate bacteriophage (Valp1) of V. anguillarum. Valp1 is a myovirus with a 60 nm head and a 90 nm contractile tail. Its double-stranded DNA genome of 42,988 bp contains 68 genes, including a protelomerase gene, typical of telomeric phages. Valp1 inhibits the growth of the virulent strain of V. anguillarum PF4, while the derived lysogenic strain P1.1 presents a slight reduction in its growth but is not affected by the presence of Valp1. Both strains present similar virulence in a larval zebrafish (Danio rerio) model, and only slight differences have been observed in their biochemical profile. Co-culture assays reveal that PF4 and P1.1 can coexist for 10 h in the presence of naturally induced Valp1, with the proportion of PF4 ranging between 28% and 1.6%. By the end of the assay, the phage reached a concentration of ~108 PFU/mL, and all the non-lysogenic PF4 strains were resistant to Valp1. This equilibrium was maintained even after five successive subcultures, suggesting the existence of a coexistence mechanism between the lysogenic and non-lysogenic populations of V. anguillarum in conjunction with the phage Valp1. Full article
(This article belongs to the Special Issue The Interactions between Phages and Their Hosts)
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19 pages, 8511 KiB  
Article
Characterization of a New Temperate Escherichia coli Phage vB_EcoP_ZX5 and Its Regulatory Protein
by Ping Li, Shanghai Yong, Xin Zhou and Jiayin Shen
Pathogens 2022, 11(12), 1445; https://doi.org/10.3390/pathogens11121445 - 30 Nov 2022
Cited by 2 | Viewed by 1480
Abstract
The study of the interaction between temperate phages and bacteria is vital to understand their role in the development of human diseases. In this study, a novel temperate Escherichia coli phage, vB_EcoP_ZX5, with a genome size of 39,565 bp, was isolated from human [...] Read more.
The study of the interaction between temperate phages and bacteria is vital to understand their role in the development of human diseases. In this study, a novel temperate Escherichia coli phage, vB_EcoP_ZX5, with a genome size of 39,565 bp, was isolated from human fecal samples. It has a short tail and belongs to the genus Uetakevirus and the family Podoviridae. Phage vB_EcoP_ZX5 encodes three lysogeny-related proteins (ORF12, ORF21, and ORF4) and can be integrated into the 3′-end of guaA of its host E. coli YO1 for stable transmission to offspring bacteria. Phage vB_EcoP_ZX5 in lysogenized E. coli YO1+ was induced spontaneously, with a free phage titer of 107 PFU/mL. The integration of vB_EcoP_ZX5 had no significant effect on growth, biofilm, environmental stress response, antibiotic sensitivity, adherence to HeLa cells, and virulence of E. coli YO1. The ORF4 anti-repressor, ORF12 integrase, and ORF21 repressors that affect the lytic–lysogenic cycle of vB_EcoP_ZX5 were verified by protein overexpression. We could tell from changes of the number of total phages and the transcription level of phage genes that repressor protein is the key determinant of lytic-to-lysogenic conversion, and anti-repressor protein promotes the conversion from lysogenic cycle to lytic cycle. Full article
(This article belongs to the Special Issue The Interactions between Phages and Their Hosts)
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