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  • Review
  • Open Access
14 Citations
4,703 Views
20 Pages

Current Status and Future Perspectives of Genomics Research in the Rust Fungi

  • Chongjing Xia,
  • Age Qiu,
  • Meinan Wang,
  • Taiguo Liu,
  • Wanquan Chen and
  • Xianming Chen

25 August 2022

Rust fungi in Pucciniales have caused destructive plant epidemics, have become more aggressive with new virulence, rapidly adapt to new environments, and continually threaten global agriculture. With the rapid advancement of genome sequencing technol...

  • Article
  • Open Access
2 Citations
2,837 Views
18 Pages

Ontogenetic Variation in Macrocyclic and Hemicyclic Poplar Rust Fungi

  • Zhongdong Yu,
  • Zijia Peng,
  • Mei Qi and
  • Wei Zheng

27 October 2022

Melampsora larici-populina (Mlp), M. medusae (Mmed), M. magnusiana (Mmag), and M. pruinosae (Mpr) are epidemic rust fungi in China. The first two are macrocyclic rust fungi distributed in temperate humid environments. The latter two are hemicyclic ru...

  • Article
  • Open Access
10 Citations
4,630 Views
32 Pages

Rust Fungi on Medicinal Plants in Guizhou Province with Descriptions of Three New Species

  • Qianzhen Wu,
  • Minghui He,
  • Tiezhi Liu,
  • Hongmin Hu,
  • Lili Liu,
  • Peng Zhao and
  • Qirui Li

21 September 2023

During the research on rust fungi in medicinal plants of Guizhou Province, China, a total of 9 rust fungal species were introduced, including 3 new species (Hamaspora rubi-alceifolii, Nyssopsora altissima, and Phragmidium cymosum), as well as 6 known...

  • Review
  • Open Access
125 Citations
21,848 Views
15 Pages

16 January 2013

Rusts are important pathogens of angiosperms and gymnosperms including cereal crops and forest trees. With respect to cereals, rust fungi are among the most important pathogens. Cereal rusts are heteroecious and macrocyclic requiring two taxonomicall...

  • Review
  • Open Access
13 Citations
6,516 Views
22 Pages

Insights into Diversity, Distribution, and Systematics of Rust Genus Puccinia

  • Shubhi Avasthi,
  • Ajay Kumar Gautam,
  • Mekala Niranjan,
  • Rajnish Kumar Verma,
  • Samantha C. Karunarathna,
  • Ashwani Kumar and
  • Nakarin Suwannarach

31 May 2023

Puccinia, which comprises 4000 species, is the largest genus of rust fungi and one of the destructive plant pathogenic rust genera that are reported to infect both agricultural and nonagricultural plants with severe illnesses. The presence of bi-cell...

  • Article
  • Open Access
9 Citations
3,218 Views
12 Pages

Leaf Cuticle Can Contribute to Non-Host Resistance to Poplar Leaf Rust

  • Zhongdong Yu,
  • Kuocheng Shen,
  • George Newcombe,
  • Junfeng Fan and
  • Qianwen Chen

3 October 2019

The plant leaf cuticle is a chemically complex but largely waxy outer shell that limits water loss and also prevents some pathogens from gaining access to internal mesophyll. Rust fungi are obligate parasites, and most bypass the cuticle by thigmotro...

  • Article
  • Open Access
1,010 Views
14 Pages

3 March 2025

Grapevine leaf rust (GLR) in temperate Asia is caused by Neophysopella meliosmae-myrianthae and N. montana; the former is commonly found on commercial grape cultivars (Vitis spp.) and the latter on a wild grape species, Vitis coignetiae. The two GLR...

  • Review
  • Open Access
2,370 Views
22 Pages

The Genus Ravenelia: Insights on Taxonomy, Diversity and Distribution

  • Shubhi Avasthi,
  • Ajay Kumar Gautam,
  • Rajnish Kumar Verma,
  • Kunhiraman C. Rajeshkumar,
  • Mekala Niranjan,
  • Amita Sharma,
  • Samantha Chandranath Karunarathna and
  • Nakarin Suwannarach

9 September 2024

Ravenelia is the third largest rust genus of the order Pucciniales with more than 200 described species. It is an important rust genus that has undergone tremendous taxonomic changes. This genus produces teliospores united into a head on a compound p...

  • Article
  • Open Access
5 Citations
3,912 Views
21 Pages

Unrelated Fungal Rust Candidate Effectors Act on Overlapping Plant Functions

  • Karen Cristine Goncalves dos Santos,
  • Gervais Pelletier,
  • Armand Séguin,
  • François Guillemette,
  • Jeffrey Hawkes,
  • Isabel Desgagné-Penix and
  • Hugo Germain

Rust fungi cause epidemics that threaten the production of important plant species, such as wheat and soy. Melampsora larici-populina (Mlp) causes the poplar rust and encodes at least 1184 candidate effectors (CEs) whose functions are poorly known. I...

  • Article
  • Open Access
1,383 Views
9 Pages

30 December 2024

A newly discovered rust fungus poses a significant threat to the survival and reproduction of the endangered plant Cystopteris chinensis in a forest in western Sichuan province, China. This study utilized both morphological analysis and molecular phy...

  • Article
  • Open Access
16 Citations
2,481 Views
14 Pages

How to Differentiate between Resistant and Susceptible Wheat Cultivars for Leaf Rust Fungi Using Antioxidant Enzymes and Histological and Molecular Studies?

  • Reda I. Omara,
  • Omar Abdullah Alkhateeb,
  • Ahmed Hassan Abdou,
  • Gabr A. El-Kot,
  • Atef A. Shahin,
  • Heba I. Saad-El-Din,
  • Rady Abdelghany,
  • Wasimah B. AL-Shammari,
  • Muayad Albadrani and
  • Khaled Abdelaal
  • + 1 author

17 November 2023

Eight wheat cultivars, Sakha-94, Giza-171, Sids-1, Sids-12, Sids-13, Shandweel-1, Misr-1, and Misr-2, were evaluated for leaf rust at the seedling and adult stages in the 2021 and 2022 seasons. Biochemical, histological, and genetic analyses were per...

  • Article
  • Open Access
5 Citations
3,740 Views
27 Pages

Comparative Genome Analyses of Plant Rust Pathogen Genomes Reveal a Confluence of Pathogenicity Factors to Quell Host Plant Defense Responses

  • Raja Sekhar Nandety,
  • Upinder S. Gill,
  • Nick Krom,
  • Xinbin Dai,
  • Yibo Dong,
  • Patrick X. Zhao and
  • Kirankumar S. Mysore

28 July 2022

Switchgrass rust caused by Puccinia novopanici (P. novopanici) has the ability to significantly affect the biomass yield of switchgrass, an important biofuel crop in the United States. A comparative genome analysis of P. novopanici with rust pathogen...

  • Article
  • Open Access
23 Citations
7,132 Views
10 Pages

Coffee Leaf Rust (Hemileia vastatrix) from the Recent Invasion into Hawaii Shares a Genotypic Relationship with Latin American Populations

  • Luis A. Ramírez-Camejo,
  • Lisa M. Keith,
  • Tracie Matsumoto,
  • Lionel Sugiyama,
  • Mach Fukada,
  • Mia Brann,
  • Ariana Moffitt,
  • Jingyu Liu and
  • M. Catherine Aime

15 February 2022

Hawaii has long been one of the last coffee-producing regions of the world free of coffee leaf rust (CLR) disease, which is caused by the biotrophic fungus Hemileia vastatrix. However, CLR was detected in coffee farms and feral coffee on the island o...

  • Article
  • Open Access
4 Citations
2,203 Views
20 Pages

19 December 2024

Maize is one of the most widely grown crops in Ethiopia and is a staple crop around the globe; however, common rust maize disease (CRMD) is becoming a serious problem and severely impacts yields. Conventional CRMD detection and treatment methods are...

  • Article
  • Open Access
5 Citations
2,455 Views
13 Pages

24 January 2025

Tan spot (Pyrenophora tritici-repentis) and stripe rust (Puccinia striiformis f. sp. tritici) are major foliar diseases of wheat, causing significant yield losses globally. This study evaluated the efficacy of fungicide seed treatments in managing th...

  • Review
  • Open Access
12 Citations
12,142 Views
99 Pages

A Global Overview of Diversity and Phylogeny of the Rust Genus Uromyces

  • Ajay Kumar Gautam,
  • Shubhi Avasthi,
  • Rajnish Kumar Verma,
  • Sushma,
  • Mekala Niranjan,
  • Bandarupalli Devadatha,
  • Ruvishika S. Jayawardena,
  • Nakarin Suwannarach and
  • Samantha C. Karunarathna

14 June 2022

Uromyces is the second-largest plant pathogenic rust genus, is responsible for numerous diseases, and has major effects on both agricultural and non-agricultural plants. The genus is generally characterized by its unicellular teliospores that help to...

  • Article
  • Open Access
3 Citations
1,819 Views
21 Pages

16 June 2024

Between 2020 and 2023, rust fungus specimens were collected from the primary forested regions of the Sanjiangyuan area in Qinghai Province, resulting in over 300 samples. A taxonomic and phylogenetic study of the rust fungi from these forests was con...

  • Brief Report
  • Open Access
1 Citations
2,066 Views
14 Pages

Fungal Diversity Detected by ITS-5.8S from Coffea arabica Leaves Infected by Rust (Hemileia vastatrix) in Southern Ecuador

  • Darío Cruz,
  • Andrea Jaramillo-Riofrío,
  • Paulo Herrera,
  • Ruth Aguinsaca and
  • Marianela Chamba

10 October 2024

Coffee production worldwide is affected by the pathogen Hemileia vastatrix, which causes the “coffee rust” disease and may be associated with other fungi. Ecuador lacks studies on fungal diversity associated with coffee rust, which could...

  • Review
  • Open Access
25 Citations
6,740 Views
25 Pages

RNAi Technology: A New Path for the Research and Management of Obligate Biotrophic Phytopathogenic Fungi

  • Isabel Padilla-Roji,
  • Laura Ruiz-Jiménez,
  • Nisrine Bakhat,
  • Alejandra Vielba-Fernández,
  • Alejandro Pérez-García and
  • Dolores Fernández-Ortuño

Powdery mildew and rust fungi are major agricultural problems affecting many economically important crops and causing significant yield losses. These fungi are obligate biotrophic parasites that are completely dependent on their hosts for growth and...

  • Communication
  • Open Access
3 Citations
2,153 Views
14 Pages

Mycoviruses in the Rust Fungus Uromyces fabae

  • Janina M. Seitz,
  • Ralf T. Voegele and
  • Tobias I. Link

4 August 2023

Uromyces fabae, the causal agent of broad bean rust, is a major cause of yield losses in North and East Africa, China, and Australia. It has also served as an important model species for research on rust fungi. Early EST sequencing in U. fabae showed...

  • Article
  • Open Access
127 Citations
12,188 Views
21 Pages

Image-Based Wheat Fungi Diseases Identification by Deep Learning

  • Mikhail A. Genaev,
  • Ekaterina S. Skolotneva,
  • Elena I. Gultyaeva,
  • Elena A. Orlova,
  • Nina P. Bechtold and
  • Dmitry A. Afonnikov

21 July 2021

Diseases of cereals caused by pathogenic fungi can significantly reduce crop yields. Many cultures are exposed to them. The disease is difficult to control on a large scale; thus, one of the relevant approaches is the crop field monitoring, which hel...

  • Article
  • Open Access
385 Views
17 Pages

The AP-1 Sigma Subunit Gene PsAP1 Acts as a Key Pathogenicity Factor by Regulating Metabolic Reprogramming in Puccinia striiformis f. sp. tritici

  • Beibei Liu,
  • Jianing Wu,
  • Guoshuai Zhang,
  • Jianghua Chen,
  • Guangkuo Li,
  • Xintong Wang,
  • W. G. Dilantha Fernando,
  • Haifeng Gao and
  • Yue Li

12 January 2026

Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), poses a severe threat to global wheat production. The adaptor protein complex AP-1 plays a crucial role in vesicular trafficking, yet its function in rust fungi remains poorly un...

  • Communication
  • Open Access
4 Citations
3,028 Views
9 Pages

First Description of Simplicillium lanosoniveum, a Potential Antagonist of the Coffee Leaf Rust from Cuba

  • Yamilé Baró Robaina,
  • Isel González Marrero,
  • María Elena Lorenzo Nicao,
  • Rafael F. Castañeda Ruiz,
  • De-Wei Li,
  • Amaia Ponce de la Cal,
  • Haifa Ben Gharsa,
  • Romina G. Manfrino,
  • Christina Schuster and
  • Andreas Leclerque

(1) The fungal genus Simplicillium (Cordycipitaceae: Hypocreales) has an extensive distribution and a broad spectrum of hosts and substrates. The species Simplicillium lanosoniveum is a mycoparasite with potential for biological control of coffee lea...

  • Article
  • Open Access
15 Citations
4,575 Views
13 Pages

10 June 2022

Wheat rust outbreaks have caused significantly economic losses all over the world. Puccinia striiformis f. sp. tritici (Pst) is an obligate biotrophic fungus causing stripe rust on wheat. Application of fungicides may cause environmental problems. Th...

  • Article
  • Open Access
7 Citations
2,967 Views
13 Pages

Antifungal Activity of Phyllospheric Bacteria Isolated from Coffea arabica against Hemileia vastatrix

  • Katty Ogata-Gutiérrez,
  • Carolina Chumpitaz-Segovia,
  • Jesus Lirio-Paredes and
  • Doris Zúñiga-Dávila

Peru is one of the leading countries that produce and export specialty coffees, favorably positioned in the international markets for its physical and organoleptic cup qualities. In recent years, yellow coffee rust caused by the phytopathogenic fungu...

  • Editorial
  • Open Access
7 Citations
6,446 Views
8 Pages

5 September 2023

Crop fungal diseases are a major threat to crop health and food security worldwide. The epidemiology is the basis for effective and sustainable control of crop fungal diseases. Safe, effective, sustainable, and eco-friendly disease control measures h...

  • Article
  • Open Access
11 Citations
6,748 Views
16 Pages

25 November 2014

Rice (Oryza sativa L.) is the only widely cultivated gramineous crops that cannot be infected by rust fungi. To decipher the molecular basis of rice nonhost resistance (NHR) to Puccinia striiformis f. sp. tritici (Pst), the causal agent of wheat stri...

  • Review
  • Open Access
3,577 Views
19 Pages

A Comprehensive Account of the Rust Genus Skierka (Skierkaceae)

  • Acharya Balkrishna,
  • Ajay Kumar Gautam,
  • Shubhi Avasthi,
  • Mekala Niranjan,
  • Rajnish Kumar Verma,
  • Vedpriya Arya,
  • Ashwani Kumar,
  • Samantha C. Karunarathna and
  • Nakarin Suwannarach

24 November 2022

The rust genus Skierka belonging to the phylum Basidiomycota was described in 1900 by Raciborski with Skierka canarii as the type species. The published literature on this rust genus reveals its ambiguity in taxonomic placement. It was challengi...

  • Article
  • Open Access
6 Citations
2,341 Views
15 Pages

Hypoxylaceous fungi are abundant in China, but their discovery and report are uneven in various provinces, with more fungi in Yunnan and Hainan and fewer fungi in Tibet. During the investigation of macro-fungi in Motuo county, Tibet Autonomous Region...

  • Review
  • Open Access
13 Citations
5,193 Views
22 Pages

21 January 2023

Plant-pathogenic fungi are responsible for many of the most severe crop diseases in the world and remain very challenging to control. Improving current protection strategies or designating new measures based on an overall understanding of molecular h...

  • Article
  • Open Access
14 Citations
3,633 Views
15 Pages

Expression Profiling of the Slow Rusting Resistance Genes Lr34/Yr18 and Lr67/Yr46 in Common Wheat (Triticum aestivum L.) and Associated miRNAs Patterns

  • Julia Spychała,
  • Agnieszka Tomkowiak,
  • Aleksandra Noweiska,
  • Roksana Bobrowska,
  • Jan Bocianowski,
  • Michał Książkiewicz,
  • Aleksandra Sobiech and
  • Michał Tomasz Kwiatek

29 June 2023

The main efforts in common wheat (Triticum aestivum L.) breeding focus on yield, grain quality, and resistance to biotic and abiotic stresses. One of the major threats affecting global wheat cultivation and causing significant crop production losses...

  • Article
  • Open Access
9 Citations
2,895 Views
19 Pages

3 February 2024

Apple rust, caused by Gymnosporangium yamadae, poses a significant challenge to apple production. Prior studies have underscored the pivotal role played by endophytic microbial communities, intimately linked with the host, in influencing plant diseas...

  • Article
  • Open Access
7 Citations
3,074 Views
16 Pages

Rust fungi cause significant damage to wheat production worldwide. In order to mitigate disease impact and improve food security via durable resistance, it is important to understand the molecular basis of host–pathogen interactions. Despite a...

  • Feature Paper
  • Review
  • Open Access
20 Citations
6,612 Views
23 Pages

Towards an Eco-Friendly Coffee Rust Control: Compilation of Natural Alternatives from a Nutritional and Antifungal Perspective

  • Nora E. Torres Castillo,
  • Yovanina Aguilera Acosta,
  • Lizeth Parra-Arroyo,
  • María Adriana Martínez-Prado,
  • Verónica M. Rivas-Galindo,
  • Hafiz M. N. Iqbal,
  • A. Damiano Bonaccorso,
  • Elda M. Melchor-Martínez and
  • Roberto Parra-Saldívar

17 October 2022

Hemileia vastatrix (HV) is the pathogen responsible for the coffee leaf rust (CLR) disease that has spread globally. CLR causes losses of up to a billion dollars annually and affects all types of crops regardless of their production regime (organic o...

  • Article
  • Open Access
6 Citations
4,593 Views
14 Pages

5 August 2018

Designer niches in which environmental variables are controlled are useful in forest restoration to enhance survival of planted tree seedlings. Here, we evaluate particular manipulated habitats, on site variables, and pre-seedling conditions hypothes...

  • Review
  • Open Access
18 Citations
8,522 Views
23 Pages

Prospects for Durable Resistance Against an Old Soybean Enemy: A Four-Decade Journey from Rpp1 (Resistance to Phakopsora pachyrhizi) to Rpp7

  • Subhash Chander,
  • Alejandro Ortega-Beltran,
  • Ranajit Bandyopadhyay,
  • Parvender Sheoran,
  • Gbemisola Oluwayemisi Ige,
  • Marta W. Vasconcelos and
  • Ana Luisa Garcia-Oliveira

Soybean rust (SBR), caused by Phakopsora spp., is a major global concern for soybean producers. SBR causing fungi are polycyclic and obligate biotrophs, rendering the study of their biology particularly tedious. Over the past four decades, substantia...

  • Article
  • Open Access
562 Views
22 Pages

4 December 2025

Epigenetic DNA modification is a key component of the defense system against invading nucleic acids such as transposons. TET/JBP dioxygenases oxidize 5-methylcytosine and lead to its replacement by cytosine in mammals. Expansion of TET/JBP genes and...

  • Article
  • Open Access
21 Citations
6,021 Views
17 Pages

The Ustilago hordei–Barley Interaction is a Versatile System for Characterization of Fungal Effectors

  • Bilal Ökmen,
  • Daniela Schwammbach,
  • Guus Bakkeren,
  • Ulla Neumann and
  • Gunther Doehlemann

27 January 2021

Obligate biotrophic fungal pathogens, such as Blumeria graminis and Puccinia graminis, are amongst the most devastating plant pathogens, causing dramatic yield losses in many economically important crops worldwide. However, a lack of reliable tools f...

  • Article
  • Open Access
1 Citations
1,516 Views
16 Pages

3 November 2024

Rainfall, particularly in continental climates with a monsoonal tendency, impacts the microbial niches during the growth of mountain cultivated ginseng. With shifts in the microbial community, diseases in ginseng cultivated and protected under rain s...

  • Communication
  • Open Access
3 Citations
2,240 Views
10 Pages

Antifungal Activity of Rue Essential Oil and Commercial Chitosan on Native Corn Foliar Diseases

  • Luis Fernando Ceja-Torres,
  • Sigifredo López-Díaz,
  • María Guadalupe Silva-Ramos,
  • José Teodoro Silva-García,
  • José Roberto Medina-Medrano and
  • Germán Fernando Gutiérrez-Hernández

28 September 2023

Native corn in Cherán, Michoacán, southwestern Mexico, represents a high-impact economic, social, and religious support, although its yield is low due to fungal diseases. Fungicides are mainly used for their control, but the fungi invol...

  • Review
  • Open Access
31 Citations
6,196 Views
27 Pages

Genetic Diversity of Barley Foliar Fungal Pathogens

  • Arzu Çelik Oğuz and
  • Aziz Karakaya

27 February 2021

Powdery mildew, net blotch, scald, spot blotch, barley stripe, and leaf rust are important foliar fungal pathogens of barley. Fungal leaf pathogens negatively affect the yield and quality in barley plant. Virulence changes, which can occur in various...

  • Article
  • Open Access
9 Citations
6,944 Views
13 Pages

18 January 2016

Needle pathogens of larch (Larix spp.) in the Nordic countries are under-studied. Their incidence in Finland tends to be low and local, and this may be a function of enemy release, since species of larch were introduced to the region. Here, the ecolo...

  • Article
  • Open Access
3 Citations
2,586 Views
22 Pages

25 September 2024

Plant disease identification is a crucial issue in agriculture, and with the advancement of deep learning techniques, early and accurate identification of plant diseases has become increasingly critical. In recent years, the rise of vision transforme...

  • Article
  • Open Access
2 Citations
1,909 Views
17 Pages

Assisted Stacking of Fungal Disease Resistance Genes in Central American Coffee Cultivars

  • Eduardo Granados Brenes,
  • Laércio Zambolim,
  • Dênia Pires de Almeida,
  • Poliane Marcele Ribeiro,
  • Bruna Lopes Mariz and
  • Eveline Teixeira Caixeta

18 January 2025

The main diseases that affect coffee production worldwide are coffee leaf rust (CLR) and coffee berry disease (CBD), caused by fungi Hemileia vastatrix and Colletotrichum kahawae, respectively. The identification of cultivars with stacking resistance...

  • Article
  • Open Access
2 Citations
2,872 Views
18 Pages

25 May 2022

Plant endosymbionts (endophytes) influence host plant health and express genotype-dependent ecological relationships with plant hosts. A fungal species intended to confer host plant resistance to a forest pathogen was used as inoculum to test for eff...

  • Review
  • Open Access
2,396 Views
26 Pages

The Enhancement of Fungal Disease Resistance in Major Staple Crops Using CRISPR-Cas Technology

  • Zagipa Sapakhova,
  • Rakhim Kanat,
  • Dias Daurov,
  • Ainash Daurova,
  • Malika Shamekova and
  • Kabyl Zhambakin

26 October 2025

Fungal pathogens represent a major constraint to global agricultural productivity, causing a wide range of plant diseases that severely affect staple crops such as cereals, legumes, and vegetables. These infections result in substantial yield losses,...

  • Article
  • Open Access
346 Views
19 Pages

Plant Microfungi Tranzschelia pruni-spinosae and Phragmidium rubi-idaei Demonstrate Allergenic Capabilities in Mouse Models of Asthma

  • Piotr Wlaź,
  • Katarzyna Socała,
  • Magdalena Krasowska-Kunach,
  • Marta Palusińska-Szysz,
  • Urszula Świderska,
  • Dominika Szczypior and
  • Agnieszka Szuster-Ciesielska

3 February 2026

Allergic conditions have surged to unprecedented levels globally, affecting approximately 30% of the global population. Fungi are among the most significant sources of allergens, accounting for approximately 6% of respiratory issues in the general po...

  • Article
  • Open Access
3 Citations
3,761 Views
12 Pages

Secondary Metabolites of Pseudomonas aeruginosa LV Strain Decrease Asian Soybean Rust Severity in Experimentally Infected Plants

  • Igor Matheus Oliveira dos Santos,
  • Valéria Yukari Abe,
  • Kenia de Carvalho,
  • André Riedi Barazetti,
  • Ane Stéfano Simionato,
  • Guilherme E. de Almeida Pega,
  • Sergio Henrique Matis,
  • Barbara Gionco Cano,
  • Martha Viviana Torres Cely and
  • Galdino Andrade
  • + 2 authors

21 July 2021

Asian Soybean Rust (ASR), a disease caused by Phakopsora pachyrhizi, causing yield losses up to 90%. The control is based on the fungicides which may generate resistant fungi. The activation of the plant defense system, should help on ASR control. In...

  • Article
  • Open Access
923 Views
10 Pages

In November 2022, black-root and stem-rot symptoms were observed on the strawberry cultivar ‘Ssanta’ in Hohhot, Inner Mongolia Autonomous Region, China. In order to identify the causing agent of strawberry root rot, and select effective f...

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