Lineage diversity can refer to the number of genetic lineages within species or to the number of deeper evolutionary lineages, such as genera or families, within a community or assemblage of species. Here, we study the latter, which we refer to as assemblage lineage diversity (ALD), focusing in particular on its richness dimension. ALD is of interest to ecologists, evolutionary biologists, biogeographers, and those setting conservation priorities, but despite its relevance, it is not clear how to best quantify it. With North American tree assemblages as an example, we explore and compare different metrics that can quantify ALD. We show that both taxonomic measures (e.g., family richness) and Faith’s phylogenetic diversity (PD) are strongly correlated with the number of lineages in recent evolutionary time, but have weaker correlations with the number of lineages deeper in the evolutionary history of an assemblage. We develop a new metric, time integrated lineage diversity (TILD), which serves as a useful complement to PD, by giving equal weight to old and recent lineage diversity. In mapping different ALD metrics across the contiguous United States, both PD and TILD reveal high ALD across large areas of the eastern United States, but TILD gives greater value to the southeast Coastal Plain, southern Rocky Mountains and Pacific Northwest, while PD gives relatively greater value to the southern Appalachians and Midwest. Our results demonstrate the value of using multiple metrics to quantify ALD, in order to highlight areas of both recent and older evolutionary diversity. Full article

Understanding the complex diversity of species and their potential uses in traditional agroforestry systems is crucial for enhancing the productivity of tropical systems and ensuring the sustainability of the natural resource base. The aim of this study is the evaluation of the role of home gardens and parklands, which are prominent tropical agroforestry systems, in the conservation and management of biodiversity. Our study quantified and compared the diversity of woody and herbaceous perennial species and their uses in traditional home gardens and parkland agroforestry systems under a sub-humid climate in western Ethiopia. A sociological survey of 130 household respondents revealed 14 different uses of the species, mostly for shade, fuelwood, food, and as traditional medicine. Vegetation inventory showed that the Fisher’s α diversity index and species richness were significantly higher in home gardens (Fisher’s α = 5.28 ± 0.35) than in parklands (Fisher’s α = 1.62 ± 0.18). Both systems were significantly different in species composition (Sørenson’s similarity coefficient = 35%). The differences occurred primarily because of the high intensity of management and the cultivation of exotic tree species in the home gardens, whereas parklands harbored mostly native flora owing to the deliberate retention and assisted regeneration by farmers. In home gardens, Mangifera indica L. was the most important woody species, followed by Cordia africana Lam. and Coffea arabica L. On the other hand, Syzygium guineense Wall. was the most important species in parklands, followed by C. africana and M. indica. The species diversity of agroforestry practices must be further augmented with both indigenous and useful, non-invasive exotic woody and herbaceous species, particularly in parklands that showed lower than expected species diversity compared to home-gardens. Full article

Salicaceae is a family of temperate woody plants in the Northern Hemisphere that are highly valued, both ecologically and economically. China contains the highest species diversity of these plants. Despite their widespread human use, how the species diversity patterns of Salicaceae plants formed remains mostly unknown, and these may be significantly affected by global climate warming. Using past, present, and future environmental data and 2673 georeferenced specimen records, we first simulated the dynamic changes in suitable habitats and population structures of Salicaceae. Based on this, we next identified those areas at high risk of habitat loss and population declines under different climate change scenarios/years. We also mapped the patterns of species diversity by constructing niche models for 215 Salicaceae species, and assessed the driving factors affecting their current diversity patterns. The niche models showed Salicaceae family underwent extensive population expansion during the Last Inter Glacial period but retreated to lower latitudes during and since the period of the Last Glacial Maximum. Looking ahead, as climate warming intensifies, suitable habitats will shift to higher latitudes and those at lower latitudes will become less abundant. Finally, the western regions of China harbor the greatest endemism and species diversity of Salicaceae, which are significantly influenced by annual precipitation and mean temperature, ultraviolet-B (UV-B) radiation, and the anomaly of precipitation seasonality. From these results, we infer water–energy dynamic equilibrium and historical climate change are both the main factors likely regulating contemporary species diversity and distribution patterns. Nevertheless, this work also suggests that other, possibly interacting, factors (ambient energy, disturbance history, soil condition) influence the large-scale pattern of Salicaceae species diversity in China, making a simple explanation for it unlikely. Because Southwest China likely served as a refuge for Salicaceae species during the Last Glacial Maximum, it is a current hotspot for endemisms. Under predicted climate change, Salicaceae plants may well face higher risks to their persistence in southwest China, so efforts to support their in-situ conservation there are urgently needed. Full article

Salvage logging after wind disturbance of a mixed conifer-hardwood forest results in sapling compositional changes but no changes to species diversity six years post-disturbance. Several conceptual frameworks allow for predictions of the effects of forest disturbances on composition, but fewer yield predictions of species diversity. Following compound disturbance, tree species diversity and composition is predicted to shift to early successional species. Because of the greater cumulative severity, diversity should be lower in areas experiencing windthrow + salvage logging than in similar sites experiencing windthrow alone. We examined the effects of wind disturbance and salvage logging on diversity parameters over six years. We hypothesized that the effects of salvage logging on diversity would be short-lived, but that species composition would be altered six years post-disturbance. Sampling plots were established in a mixed-hardwood forest in north Georgia, USA, after a 2011 EF3 tornado and surveyed in 2012 and 2017. Nineteen 20 × 20 m plots were surveyed (10 unsalvaged, 9 salvaged) for parameters including Shannon diversity, species richness, and composition. Ordinations were used to visualize tree and sapling species composition in salvage logged plots. We found that there was no significant difference in Shannon diversity between salvaged and unsalvaged plots before disturbance, <1 post-disturbance, or 6 years post-disturbance. The disturbances altered the tree and sapling species compositions, with salvaged plots having more mid-successional saplings but few true pioneer species. There appears to be an emerging pattern in the wind disturbance + salvaging literature which our study supports– salvaging does not affect tree species diversity but shifts species composition over time. Full article

Foundation species define and structure ecological communities but are difficult to identify before they are declining. Yet, their defining role in ecosystems suggests they should be a high priority for protection and management while they are still common and abundant. We used comparative analyses of six large forest dynamics plots spanning a temperate-to-tropical gradient in the Western Hemisphere to identify statistical “fingerprints” of potential foundation species based on their size-frequency and abundance-diameter distributions, and their spatial association with five measures of diversity of associated woody plant species. Potential foundation species are outliers from the common “reverse-J” size-frequency distribution, and have negative effects on alpha diversity and positive effects on beta diversity at most spatial lags and directions. Potential foundation species also are more likely in temperate forests, but foundational species groups may occur in tropical forests. As foundation species (or species groups) decline, associated landscape-scale (beta) diversity is likely to decline along with them. Preservation of this component of biodiversity may be the most important consequence of protecting foundation species while they are still common. Full article

The use of silvicultural systems that emulate aspects of natural disturbance regimes, including natural disturbance severities and scales, has been advocated as a strategy for restoring and conserving forest biodiversity in forests managed for wood products. Nonetheless, key information gaps remain regarding the impacts of these approaches on a wide range of taxa, including understory plant species. We investigated the 6- or 7-year response of herbaceous vegetation to natural disturbance-based silvicultural harvest gaps in a northern hardwood forest in Northeastern Minnesota. These results indicate that harvest gaps are effective in conserving understory plant diversity by promoting conditions necessary for disturbance-dependent understory plant species. However, harvest gaps also contained non-native invasive plant species. Full article

This study presents a new metric for quantifying structural complexity using the diversity of tree damage types in forests that have experienced wind disturbance. Structural complexity studies of forests have to date not incorporated any protocol to address the variety of structural damage types experienced by trees in wind disturbances. This study describes and demonstrates such a protocol. Damage diversity, defined as the richness and evenness of types of tree damage, is calculated analogously to species diversity using two common indices, and termed a ‘Shannon Damage Heterogeneity Index’ (Sh-DHI) and an inverse Simpson Damage Heterogeneity Index (iSi-DHI). The two versions of the DHI are presented for >400 plots across 18 distinct wind disturbed forests of eastern North America. Relationships between DHI and pre-disturbance forest species diversity and size variability, as well as wind disturbance severity, calculated as the fraction of basal area downed in a wind disturbance event, are examined. DHIs are only weakly related to pre-disturbance tree species diversity, but are significantly positively related to pre-disturbance tree size inequality (size diversity). Damage diversity exhibits a robust curvilinear relationship to severity; both versions of the DHI show peaks at intermediate levels of wind disturbance severity, suggesting that in turn structural complexity may also peak at intermediate levels of severity. Full article

Climate change has been linked to distribution shifts and population declines of numerous animal and plant species, particularly in montane ecosystems. The majority of studies suggest both that low-elevation avian and small mammal species are shifting up in elevation and that high-elevation avian communities are either shifting further upslope or relocating completely with an increase in average local temperatures. However, recent research suggests numerous high elevation montane species are either not shifting or are shifting down in elevation despite the local increasing temperature trends, perhaps as a result of the increased precipitation at high elevations. In this study, we examine common vertebrate species distributions across the Hubbard Brook valley in the White Mountain National Forest, including resident and migratory songbirds and small mammals, in relation to historic spring temperature and precipitation. We found no directional change in distributions through time for any of the species. However, we show that the majority of low-elevation bird species in our study area respond to warm spring temperatures by shifting upslope. All bird species that shifted were long-distance migrants. Each low-elevation migrant species responded differently to warm spring temperatures, through upslope distribution expansion, downslope distribution contraction, or total distribution shift upslope. In contrast, we found a majority of high-elevation bird species and both high- and low-elevation mammal species did not shift in response to spring temperature or precipitation and may be subject to more complex climate trends. The heterogeneous response to climate change highlights the need for more comprehensive studies on the subject and careful consideration for appropriate species and habitat management plans in northeastern montane regions. Full article

Tree species diversity can positively affect the multifunctionality of forests. This is why conifer monocultures of Scots pine and Norway spruce, widely promoted in Central Europe since the 18th and 19th century, are currently converted into mixed stands with naturally dominant European beech. Biodiversity is expected to benefit from these mixtures compared to pure conifer stands due to increased abiotic and biotic resource heterogeneity. Evidence for this assumption is, however, largely lacking. Here, we investigated the diversity of vascular plants, bryophytes and lichens at the plot (alpha diversity) and at the landscape (gamma diversity) level in pure and mixed stands of European beech and conifer species (Scots pine, Norway spruce, Douglas fir) in four regions in Germany. We aimed to identify compositions of pure and mixed stands in a hypothetical forest landscape that can optimize gamma diversity of vascular plants, bryophytes and lichens within regions. Results show that gamma diversity of the investigated groups is highest when a landscape comprises different pure stands rather than tree species mixtures at the stand scale. Species mainly associated with conifers rely on light regimes that are only provided in pure conifer forests, whereas mixtures of beech and conifers are more similar to beech stands. Combining pure beech and pure conifer stands at the landscape scale can increase landscape level biodiversity and conserve species assemblages of both stand types, while landscapes solely composed of stand scale tree species mixtures could lead to a biodiversity reduction of a combination of investigated groups of 7 up to 20%. Full article

Ecologists have studied geographic gradients in biodiversity for decades and recently mapped the intensity of the “human footprint” around the planet. The combination of these efforts have identified some global hotspots of biodiversity that are heavily impacted by human-caused land cover change and infrastructure. However, other hotspots of biodiversity experience less intense modifications from humans. Relationships between species diversity and the human footprint may be driven by covarying factors, like climate, soils, or topography, that coincidentally influence patterns of biodiversity and human land use. Here, I investigated relationships between tree species richness and the degree of human modification among Forest Service ranger districts within the contiguous US. Ranger districts with more tree species tended to experience greater human modification. Using data on climate, soils, and topography, I explored mechanisms explaining the positive relationship between tree richness and human modification. I found that climate is related to both tree richness and human modification, which may be indirectly mediated through climate’s role governing productivity. Ranger districts with more productive climates support more species and greater human modification. To explore potential conservation consequences of these relationships, I also investigated whether the amount of area designated within highly protected conservation lands were related to climate, productivity, and topography. Less productive ranger districts with steeper slopes tended to experience the greatest relative amounts of conservation protection. Combined, these results suggest that complex relationships explain the geographic patterns of biodiversity and the human footprint, but that climate and topography partially govern patterns of each. Full article

Poplar plantations have the capacity to improve the properties of soils in muddy coastal areas; however, our understanding of the impacts of plantation development on soil arthropods remains limited. For this study, we determined the community dynamics of soil dwelling arthropods across poplar plantations of different ages (5-, 10-, and 21-years) over the course of one year in Eastern Coastal China. The total abundance of soil arthropods differed with stand development. Further, there were some interactions that involved the sampling date. On average, total abundance was highest in the 10-year-old stands and lowest in the 5-year-old stands. Total abundance exhibited strong age-dependent trends in June and September, but not in March or December. The abundance of Prostigmata and Oribatida increased in the 5- to 21-year-old stands, with the highest levels being in the 10-year-old stands. The abundance of Collembola increased with stand development; however, the stand age had no significant impact on the abundance of epedapic, hemiedaphic, and euedaphic Collembola. Order richness (Hill number q = 0) curve confidence intervals overlapped among three stand ages. Shannon and Simpson diversity (Hill numbers q = 1 and q = 2) differed between 10- and 21-year-old stand age. They showed almost similar trends, and the highest and lowest values were recorded in the 21- and 10-year-old stand ages, respectively. Permutational multivariate analysis of variance demonstrated that composition also varied significantly with the sampling date and stand age, and the 10-year-old stands that were sampled in June stood well-separated from the others. Indicator analysis revealed that Scolopendromorpha and Prostigmata were indicators in June for the 10-year-old stands, while Collembola were indicators for the 21-year-old stands sampled in September. Our results highlight that both stand development and climate seasonality can significantly impact soil arthropod community dynamics in the reclaimed coastal saline soils of managed poplar plantations. Full article

Explaining the high diversity of tree species in tropical forests remains a persistent challenge in ecology. The analysis of spatial patterns of different species and their spatial diversity captures the spatial variation of species behaviors from a ‘plant’s eye view’ of a forest community. To measure scale-dependent species-species interactions and species diversity at neighborhood scales, we applied uni- and bivariate pair correlation functions and individual species area relationships (ISARs) to two fully mapped 2-ha plots of tropical evergreen forests in north-central Vietnam. The results showed that (1) positive conspecific interactions dominated at scales smaller than 30 m in both plots, while weak negative interactions were only observed in P2 at scales larger than 30 m; (2) low numbers of non-neutral interactions between tree species were observed in both study plots. The effect of scale separation by habitat variability on heterospecific association was observed at scales up to 30 m; (3) the dominance of diversity accumulators, the species with more diversity in local neighborhoods than expected by the null model, occurred at small scales, while diversity repellers, the species with less diversity in local neighborhoods, were more frequent on larger scales. Overall, the significant heterospecific interactions revealed by our study were common in highly diverse tropical forests. Conspecific distribution patterns were mainly regulated by topographic variation at local neighborhood scales within 30 m. Moreover, ISARs were also affected by habitat segregation and species diversity patterns occurring at small neighborhood scales. Mixed effects of limited dispersal, functional equivalence, and habitat variability could drive spatial patterns of tree species in this study. For further studies, the effects of topographical variables on tree species associations and their spatial autocorrelations with forest stand properties should be considered for a comprehensive assessment. Full article

Knowledge about how species richness varies along spatial and environmental gradients is important for the conservation and use of biodiversity. The Ericaceae is a major component of alpine and subalpine vegetation globally. However, little is known about the spatial pattern of species richness and the factors that drive that richness in Ericaceae. We investigated variation in species richness of Ericaceae along an elevational gradient in Yunnan, China, and used a variation partitioning analysis based on redundancy analysis ordination to examine how those changes might be influenced by the mid-domain effect, the species-area relationship, and climatic variables. Species richness varied significantly with elevation, peaking in the upper third of the elevational gradient. Of the factors examined, climate explained a larger proportion of the variance in species richness along the elevational gradient than either land area or geometric constraints. Species richness showed a unimodal relationship with mean annual temperature and mean annual precipitation. The elevational pattern of species richness for Ericaceae was shaped by the combined effects of climate and competition. Our findings contribute to a better understanding of the potential effects of climate change on species richness for Ericaceae. Full article

Research Highlights: Excess N from atmospheric deposition has been shown to decrease plant biodiversity of impacted forests, especially in its effects on herbaceous layer communities. This work demonstrates that one of the mechanisms of such response is in N-mediated changes in the response of herb communities to soil resources and light availability. Background and Objectives: Numerous studies in a variety of forest types have shown that excess N can cause loss of biodiversity of herb layer communities, which are typically responsive to spatial patterns of soil resource and light availability. The objectives of this study were to examine (1) gradients of temporal change in herb composition over a quarter century, and (2) spatial patterns of herb cover and diversity and how they are influenced by soil resources and canopy structure. Materials and Methods: This study used two watersheds (WS) at the Fernow Experimental Forest, West Virginia, USA: WS4 as an untreated reference and WS3 as treatment, receiving 35 kg N/ha/yr via aerial application. Herb cover and composition was measured in seven permanent plots/WS from 1991 to 2014. In 2011, soil moisture and several metrics of soil N availability were measured in each plot, along with measurement of several canopy structural variables. Backwards stepwise regression was used to determine relationships between herb cover/diversity and soil/canopy measurements. Results: Herb diversity and composition varied only slightly over time on reference WS4, in contrast to substantial change on N-treated WS3. Herb layer diversity appeared to respond to neither soil nor canopy variables on either watershed. Herb cover varied spatially with soil resources on WS4, whereas cover varied spatially with canopy structure on WS3. Conclusions: Results support work in many forest types that excess N can decrease plant diversity in impacted stands. Much of this response is likely related to N-mediated changes in the response of the herb layer to soil N and light availability. Full article