Genetic Susceptibility to Allergic Conditions: A Focus on Epigenetic Mechanisms

A special issue of Genes (ISSN 2073-4425). This special issue belongs to the section "Human Genomics and Genetic Diseases".

Deadline for manuscript submissions: closed (31 March 2020) | Viewed by 13179

Special Issue Editor


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Guest Editor
Tier II Canadian Research Chair Genetic Epidemiology of Common Complex Diseases, Faculty of Medicine, University of British Columbia, Vancouver, BC V6G 1Y6, Canada
Interests: developmental origins of human disease (DoHD); birth cohorts; family studies; genetic association; gene-gene/environment interactions and common complex diseases

Special Issue Information

Dear Colleagues,

It has long been speculated that childhood asthma and atopic disease originate in utero and/or early childhood. In recent years, various hypotheses have been put forward to explain the early childhood origins of asthma and allergic disease. Perhaps first and foremost among these is the hygiene hypothesis, whereby the increasing prevalence of asthma and allergic disease can be attributed to the cleaner environment that results in reduced exposure of a developing immune system. The hygiene hypothesis is complemented by the microbiota hypothesis and our increasing knowledge of the importance of the microbiome in disease development. The link between the hygiene hypothesis and the microbiome is in line with the Developmental Origins of Human Disease or DoHD, which speculates that many diseases have their origins in early life. Central to these arguments is the importance of early environmental exposures and epigenetic regulation of the genome. The latter not only supports these hypotheses but will also provide insights in the mechanisms of the early origins of many allergic phenotypes.

My personal research interests are in the study of gene–gene and gene–environment interactions.  During my career, I have conducted numerous genetic association studies and evaluations of environmental risk factors, but have been frustrated by the limited ability to examine gene–environment interactions. In the last several years, we have seen the growth of studies that incorporate the environment in their analyses, including the assessment of the epigenome, which is believed to modify gene expression in response to environmental exposures. This has given birth to a new study design, i.e., the epigenome-wide association study (EWAS).  With our ability to evaluate the epigenome come exciting opportunities to better understand gene–environment interactions involved in the development of common complex diseases. This Special Issue titled “Genetic Susceptibility to Allergic Conditions: a Focus on Epigenetic Mechanisms” will aim to understand the genetic and epigenetic mechanisms that contribute to the burden of allergic disease. 

We invite novel research and review articles relevant to this topic.

Prof. Denise Daley
Guest Editor

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Keywords

  • asthma
  • allergy
  • eczema
  • epigenetics
  • association
  • genetics

Published Papers (2 papers)

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Review

46 pages, 2869 KiB  
Review
Genetics and Epigenetics of Atopic Dermatitis: An Updated Systematic Review
by Maria J Martin, Miguel Estravís, Asunción García-Sánchez, Ignacio Dávila, María Isidoro-García and Catalina Sanz
Genes 2020, 11(4), 442; https://doi.org/10.3390/genes11040442 - 18 Apr 2020
Cited by 51 | Viewed by 7765
Abstract
Background: Atopic dermatitis is a common inflammatory skin disorder that affects up to 15–20% of the population and is characterized by recurrent eczematous lesions with intense itching. As a heterogeneous disease, multiple factors have been suggested to explain the nature of atopic dermatitis [...] Read more.
Background: Atopic dermatitis is a common inflammatory skin disorder that affects up to 15–20% of the population and is characterized by recurrent eczematous lesions with intense itching. As a heterogeneous disease, multiple factors have been suggested to explain the nature of atopic dermatitis (AD), and its high prevalence makes it necessary to periodically compile and update the new information available. In this systematic review, the focus is set at the genetic and epigenetic studies carried out in the last years. Methods: A systematic literature review was conducted in three scientific publication databases (PubMed, Cochrane Library, and Scopus). The search was restricted to publications indexed from July 2016 to December 2019, and keywords related to atopic dermatitis genetics and epigenetics were used. Results: A total of 73 original papers met the inclusion criteria established, including 9 epigenetic studies. A total of 62 genes and 5 intergenic regions were described as associated with AD. Conclusion: Filaggrin (FLG) polymorphisms are confirmed as key genetic determinants for AD development, but also epigenetic regulation and other genes with functions mainly related to the immune system and extracellular matrix, reinforcing the notion of skin homeostasis breakage in AD. Full article
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26 pages, 4861 KiB  
Review
Cell-Specific DNA Methylation Signatures in Asthma
by Andrée-Anne Hudon Thibeault and Catherine Laprise
Genes 2019, 10(11), 932; https://doi.org/10.3390/genes10110932 - 15 Nov 2019
Cited by 24 | Viewed by 5054
Abstract
Asthma is a complex trait, often associated with atopy. The genetic contribution has been evidenced by familial occurrence. Genome-wide association studies allowed for associating numerous genes with asthma, as well as identifying new loci that have a minor contribution to its phenotype. Considering [...] Read more.
Asthma is a complex trait, often associated with atopy. The genetic contribution has been evidenced by familial occurrence. Genome-wide association studies allowed for associating numerous genes with asthma, as well as identifying new loci that have a minor contribution to its phenotype. Considering the role of environmental exposure on asthma development, an increasing amount of literature has been published on epigenetic modifications associated with this pathology and especially on DNA methylation, in an attempt to better understand its missing heritability. These studies have been conducted in different tissues, but mainly in blood or its peripheral mononuclear cells. However, there is growing evidence that epigenetic changes that occur in one cell type cannot be directly translated into another one. In this review, we compare alterations in DNA methylation from different cells of the immune system and of the respiratory tract. The cell types in which data are obtained influences the global status of alteration of DNA methylation in asthmatic individuals compared to control (an increased or a decreased DNA methylation). Given that several genes were cell-type-specific, there is a great need for comparative studies on DNA methylation from different cells, but from the same individuals in order to better understand the role of epigenetics in asthma pathophysiology. Full article
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