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Metabolites, Volume 9, Issue 7

2019 July - 33 articles

Cover Story: Protein glycosylation is a ubiquitous form of protein modification. It plays a central role in most complex disorders. Yet, the biological processes involved in establishing the human “glycan code” are not well understood. Until we develop tools to study the glycoproteome, we are forced to analyze the glycome and the proteome independently, which makes them difficult to combine. In this study, we linked these two omics layers for the first time by correlating the levels of over one thousand blood-circulating proteins with more than 100 protein N-glycan traits. Our study included almost 400 samples from an ethnically diverse population of Arab, South-Asian, Filipino, and European ancestries and reveals complex relationships between the blood proteome and its N-glycome, suggesting new avenues for the investigation of their roles and functions in the many associated diseases. View this paper.
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Articles (33)

  • Article
  • Open Access
25 Citations
5,099 Views
17 Pages

Metabolic changes in sorghum seedlings in response to Paenibacillus alvei (NAS-6G6)-induced systemic resistance against Fusarium pseudograminearum crown rot were investigated by means of untargeted ultra-high performance liquid chromatography-high de...

  • Article
  • Open Access
36 Citations
6,740 Views
16 Pages

Residual feed intake (RFI) is designed to estimate net efficiency of feed use, so low RFI animals are considered for selection to reduce feeding costs. However, metabolic profiling of cows and availability of predictive metabolic biomarkers for RFI a...

  • Article
  • Open Access
37 Citations
5,763 Views
17 Pages

storage Banana fruit after harvest is susceptible to chilling injury, which is featured by peel browning during cold, and it easily loses its nutrition and economic values. This study investigated the role of fibroin treatment in delaying peel browni...

  • Article
  • Open Access
2 Citations
5,200 Views
16 Pages

Untargeted Metabolomics Approach Reveals Diverse Responses of Pastinaca Sativa to Ozone and Wounding Stresses

  • Gianni Galati,
  • Anthony Gandin,
  • Yves Jolivet,
  • Romain Larbat and
  • Alain Hehn

Stresses such as wounding or atmospheric pollutant exposure have a significant impact on plant fitness. Since it has been widely described that the metabolome directly reflects plant physiological status, a way to assess this impact is to perform a g...

  • Article
  • Open Access
48 Citations
6,783 Views
18 Pages

The Ruminal Microbiome and Metabolome Alterations Associated with Diet-Induced Milk Fat Depression in Dairy Cows

  • Hongbo Zeng,
  • Changzheng Guo,
  • Daming Sun,
  • Hossam-eldin Seddik and
  • Shengyong Mao

Milk fat depression (MFD) syndrome represents a significant drawback to the dairy industry. The aim of this study was to unravel the ruminal metabolome-microbiome interaction in response to diet-induced MFD in dairy cows. Twelve healthy second parity...

  • Article
  • Open Access
4 Citations
3,504 Views
11 Pages

Pharmacometabolomic Pathway Response of Effective Anticancer Agents on Different Diets in Rats with Induced Mammary Tumors

  • Zhijun Cao,
  • Mark Steven Miller,
  • Ronald A. Lubet,
  • Clinton J. Grubbs and
  • Richard D. Beger

Metabolomics is an effective approach to characterize the metabotype which can reflect the influence of genetics, physiological status, and environmental factors such as drug intakes, diet. Diet may change the chemopreventive efficacy of given agents...

  • Communication
  • Open Access
20 Citations
6,113 Views
11 Pages

Intracellular Staphylococcus aureus Elicits the Production of Host Very Long-Chain Saturated Fatty Acids with Antimicrobial Activity

  • Natalia Bravo-Santano,
  • James K. Ellis,
  • Yolanda Calle,
  • Hector C. Keun,
  • Volker Behrends and
  • Michal Letek

As a facultative intracellular pathogen, Staphylococcus aureus is able to invade and proliferate within many types of mammalian cells. Intracellular bacterial replication relies on host nutrient supplies and, therefore, cell metabolism is closely bou...

  • Article
  • Open Access
12 Citations
5,249 Views
21 Pages

1H HR-MAS NMR-Based Metabolomics of Cancer Cells in Response to Treatment with the Diruthenium Trithiolato Complex [(p-MeC6H4iPr)2Ru2(SC6H4-p-But)3]+ (DiRu-1)

  • Hedvika Primasová,
  • Lydia E. H. Paul,
  • Gaëlle Diserens,
  • Ester Primasová,
  • Peter Vermathen,
  • Martina Vermathen and
  • Julien Furrer

The trithiolato bridged diruthenium complex DiRu-1 [(p-MeC6H4iPr)2Ru2(SC6H4-p-But)3]+ is highly cytotoxic against various cancer cell lines, but its exact mode of action remains unknown. The present 1H HR-MAS NMR-based metabolomic study was performed...

  • Article
  • Open Access
14 Citations
5,205 Views
10 Pages

Anion Inhibition Profile of the β-Carbonic Anhydrase from the Opportunist Pathogenic Fungus Malassezia restricta Involved in Dandruff and Seborrheic Dermatitis

  • Sonia Del Prete,
  • Andrea Angeli,
  • Cynthia Ghobril,
  • Julien Hitce,
  • Cécile Clavaud,
  • Xavier Marat,
  • Claudiu T. Supuran and
  • Clemente Capasso

Carbonic anhydrases (CAs, EC 4.2.1.1) are ubiquitous metalloenzymes, which catalyze the crucial physiological CO2 hydration/dehydration reaction (CO2 + H2O ⇌ HCO3 + H+) balancing the equilibrium between CO2, H2CO3, HCO3 and CO32−....

  • Article
  • Open Access
35 Citations
9,848 Views
21 Pages

Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS)

  • Mary C. Playdon,
  • Amit D. Joshi,
  • Fred K. Tabung,
  • Susan Cheng,
  • Mir Henglin,
  • Andy Kim,
  • Tengda Lin,
  • Eline H. van Roekel,
  • Jiaqi Huang and
  • Oana A. Zeleznik
  • + 14 authors

The application of metabolomics technology to epidemiological studies is emerging as a new approach to elucidate disease etiology and for biomarker discovery. However, analysis of metabolomics data is complex and there is an urgent need for the stand...

  • Article
  • Open Access
316 Citations
26,115 Views
25 Pages

MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools

  • Madeleine Ernst,
  • Kyo Bin Kang,
  • Andrés Mauricio Caraballo-Rodríguez,
  • Louis-Felix Nothias,
  • Joe Wandy,
  • Christopher Chen,
  • Mingxun Wang,
  • Simon Rogers,
  • Marnix H. Medema and
  • Justin J.J. van der Hooft
  • + 1 author

Metabolomics has started to embrace computational approaches for chemical interpretation of large data sets. Yet, metabolite annotation remains a key challenge. Recently, molecular networking and MS2LDA emerged as molecular mining tools that find mol...

  • Article
  • Open Access
8 Citations
4,447 Views
14 Pages

1H-NMR Metabolomics Identifies Significant Changes in Metabolism over Time in a Porcine Model of Severe Burn and Smoke Inhalation

  • Cole Hendrickson,
  • Katharina Linden,
  • Stefan Kreyer,
  • Gregory Beilman,
  • Vittorio Scaravilli,
  • Daniel Wendorff,
  • Corina Necsoiu,
  • Andriy I. Batchinsky,
  • Leopoldo C. Cancio and
  • Elizabeth R. Lusczek
  • + 1 author

Burn injury initiates a hypermetabolic response leading to muscle catabolism and organ dysfunction but has not been well-characterized by high-throughput metabolomics. We examined changes in metabolism over the first 72 h post-burn using proton nucle...

  • Review
  • Open Access
69 Citations
11,340 Views
15 Pages

Statistical Workflow for Feature Selection in Human Metabolomics Data

  • Joseph Antonelli,
  • Brian L. Claggett,
  • Mir Henglin,
  • Andy Kim,
  • Gavin Ovsak,
  • Nicole Kim,
  • Katherine Deng,
  • Kevin Rao,
  • Octavia Tyagi and
  • Susan Cheng
  • + 8 authors

High-throughput metabolomics investigations, when conducted in large human cohorts, represent a potentially powerful tool for elucidating the biochemical diversity underlying human health and disease. Large-scale metabolomics data sources, generated...

  • Article
  • Open Access
14 Citations
5,447 Views
17 Pages

Ancient Danish Apple Cultivars—A Comprehensive Metabolite and Sensory Profiling of Apple Juices

  • Nunzia Iaccarino,
  • Camilla Varming,
  • Mikael Agerlin Petersen,
  • Nanna Viereck,
  • Birk Schütz,
  • Torben Bo Toldam-Andersen,
  • Antonio Randazzo and
  • Søren Balling Engelsen

In recent decades, intensive selective breeding programs have allowed the development of disease-resistant and flavorsome apple cultivars while leading to a gradual decline of a large number of ancient varieties in many countries. However, the re-eva...

  • Article
  • Open Access
44 Citations
6,812 Views
19 Pages

Metabolic Regulation of Glycolysis and AMP Activated Protein Kinase Pathways during Black Raspberry-Mediated Oral Cancer Chemoprevention

  • Thomas J. Knobloch,
  • Nathan M. Ryan,
  • Lei Bruschweiler-Li,
  • Cheng Wang,
  • Matthew C. Bernier,
  • Arpad Somogyi,
  • Pearlly S. Yan,
  • Jessica L. Cooperstone,
  • Xiaokui Mo and
  • Steve Oghumu
  • + 2 authors

Oral cancer is a public health problem with an incidence of almost 50,000 and a mortality of 10,000 each year in the USA alone. Black raspberries (BRBs) have been shown to inhibit oral carcinogenesis in several preclinical models, but our understandi...

  • Article
  • Open Access
35 Citations
5,532 Views
19 Pages

Salivary Metabolome and Soccer Match: Challenges for Understanding Exercise induced Changes

  • Erica Pitti,
  • Greta Petrella,
  • Sara Di Marino,
  • Vincenzo Summa,
  • Marco Perrone,
  • Stefano D’Ottavio,
  • Andrea Bernardini and
  • Daniel Oscar Cicero

Saliva samples of seventeen soccer players were analyzed by nuclear magnetic resonance before and after an official match. Two different ways of normalizing data are discussed, using total proteins and total metabolite concentrations. Changes in mark...

  • Review
  • Open Access
39 Citations
5,918 Views
18 Pages

Imaging Mass Spectrometry: A New Tool to Assess Molecular Underpinnings of Neurodegeneration

  • Kevin Chen,
  • Dodge Baluya,
  • Mehmet Tosun,
  • Feng Li and
  • Mirjana Maletic-Savatic

Neurodegenerative diseases are prevalent and devastating. While extensive research has been done over the past decades, we are still far from comprehensively understanding what causes neurodegeneration and how we can prevent it or reverse it. Recentl...

  • Article
  • Open Access
16 Citations
6,668 Views
18 Pages

High-Intensity Interval Training Decreases Resting Urinary Hypoxanthine Concentration in Young Active Men—A Metabolomic Approach

  • Sina Kistner,
  • Manuela J. Rist,
  • Ralf Krüger,
  • Maik Döring,
  • Sascha Schlechtweg and
  • Achim Bub

High-intensity interval training (HIIT) is known to improve performance and skeletal muscle energy metabolism. However, whether the body’s adaptation to an exhausting short-term HIIT is reflected in the resting human metabolome has not been exa...

  • Communication
  • Open Access
22 Citations
6,274 Views
17 Pages

Blueberry-Based Meals for Obese Patients with Metabolic Syndrome: A Multidisciplinary Metabolomic Pilot Study

  • Anatoly Petrovich Sobolev,
  • Alessandra Ciampa,
  • Cinzia Ingallina,
  • Luisa Mannina,
  • Donatella Capitani,
  • Ilaria Ernesti,
  • Elisa Maggi,
  • Rita Businaro,
  • Maria Del Ben and
  • Alessandro Pinto
  • + 3 authors

A pilot study was carried out on five obese/overweight patients suffering from metabolic syndrome, with the aim to evaluate postprandial effects of high fat/high glycemic load meals enriched by blueberries. Postprandial urine samples were analyzed by...

  • Article
  • Open Access
50 Citations
7,659 Views
19 Pages

Metabolic Perturbations from Step Reduction in Older Persons at Risk for Sarcopenia: Plasma Biomarkers of Abrupt Changes in Physical Activity

  • Michelle Saoi,
  • Alice Li,
  • Chris McGlory,
  • Tanner Stokes,
  • Mark T. von Allmen,
  • Stuart M. Phillips and
  • Philip Britz-McKibbin

Sarcopenia is the age-related loss of skeletal muscle mass, strength and function, which may be accelerated during periods of physical inactivity. Declines in skeletal muscle and functionality not only impacts mobility but also increases chronic dise...

  • Article
  • Open Access
14 Citations
5,242 Views
12 Pages

Visualization and Interpretation of Multivariate Associations with Disease Risk Markers and Disease Risk—The Triplot

  • Tessa Schillemans,
  • Lin Shi,
  • Xin Liu,
  • Agneta Åkesson,
  • Rikard Landberg and
  • Carl Brunius

Metabolomics has emerged as a promising technique to understand relationships between environmental factors and health status. Through comprehensive profiling of small molecules in biological samples, metabolomics generates high-dimensional data obje...

  • Article
  • Open Access
22 Citations
5,324 Views
12 Pages

Ginkgo leaf extract (GLE) is a popular herbal medicine and dietary supplement for the treatment of various diseases, including cardiovascular disease. GLE contains a variety of secondary plant metabolites, such as flavonoids and terpenoids, as active...

  • Article
  • Open Access
12 Citations
5,266 Views
10 Pages

Eicosanoid Profile of Influenza A Virus Infected Pigs

  • Daniel Schultz,
  • Karen Methling,
  • KoInfekt Study Group,
  • Michael Rothe and
  • Michael Lalk

Respiratory tract infections caused by the Influenza A virus (IAV) are a worldwide problem for human and animal health. Within this study, we analyzed the impact of IAV infection on the immune-related lipidome (eicosanoids) of the pig as new infectio...

  • Article
  • Open Access
16 Citations
5,472 Views
13 Pages

Effects of Water Availability in the Soil on Tropane Alkaloid Production in Cultivated Datura stramonium

  • Abigail Moreno-Pedraza,
  • Jennifer Gabriel,
  • Hendrik Treutler,
  • Robert Winkler and
  • Fredd Vergara

Background: different Solanaceae and Erythroxylaceae species produce tropane alkaloids. These alkaloids are the starting material in the production of different pharmaceuticals. The commercial demand for tropane alkaloids is covered by extracting the...

  • Perspective
  • Open Access
28 Citations
7,695 Views
14 Pages

Unmet clinical diagnostic needs exist for many complex diseases, which it is hoped will be solved by the discovery of metabolomics biomarkers. However, as yet, no diagnostic tests based on metabolomics have yet been introduced to the clinic. This rev...

  • Article
  • Open Access
53 Citations
6,964 Views
22 Pages

Human Plasma Metabolomics in Age-Related Macular Degeneration: Meta-Analysis of Two Cohorts

  • Inês Laíns,
  • Wonil Chung,
  • Rachel S. Kelly,
  • João Gil,
  • Marco Marques,
  • Patrícia Barreto,
  • Joaquim N. Murta,
  • Ivana K. Kim,
  • Demetrios G. Vavvas and
  • Deeba Husain
  • + 5 authors

The pathogenesis of age-related macular degeneration (AMD), a leading cause of blindness worldwide, remains only partially understood. This has led to the current lack of accessible and reliable biofluid biomarkers for diagnosis and prognosis, and ab...

  • Protocol
  • Open Access
12 Citations
6,113 Views
7 Pages

A Single Visualization Technique for Displaying Multiple Metabolite–Phenotype Associations

  • Mir Henglin,
  • Teemu Niiranen,
  • Jeramie D. Watrous,
  • Kim A. Lagerborg,
  • Joseph Antonelli,
  • Brian L. Claggett,
  • Emmanuella J. Demosthenes,
  • Beatrice von Jeinsen,
  • Olga Demler and
  • Susan Cheng
  • + 3 authors

To assist with management and interpretation of human metabolomics data, which are rapidly increasing in quantity and complexity, we need better visualization tools. Using a dataset of several hundred metabolite measures profiled in a cohort of ~1500...

  • Article
  • Open Access
31 Citations
4,583 Views
14 Pages

Associations between multicollinear accelerometry-derived physical activity (PA) data and cardiometabolic health in children needs to be analyzed using an approach that can handle collinearity among the explanatory variables. The aim of this paper is...

  • Communication
  • Open Access
58 Citations
5,745 Views
8 Pages

Vitamin D deficiency is associated with not only cardiovascular disease itself but also cardiovascular risk factors, including obesity, hypertension, diabetes, hyperglycemia, and dyslipidemia. This study aimed to investigate the relationship between...

  • Review
  • Open Access
947 Citations
37,340 Views
39 Pages

NMR Spectroscopy for Metabolomics Research

  • Abdul-Hamid Emwas,
  • Raja Roy,
  • Ryan T. McKay,
  • Leonardo Tenori,
  • Edoardo Saccenti,
  • G. A. Nagana Gowda,
  • Daniel Raftery,
  • Fatimah Alahmari,
  • Lukasz Jaremko and
  • David S. Wishart
  • + 1 author

Over the past two decades, nuclear magnetic resonance (NMR) has emerged as one of the three principal analytical techniques used in metabolomics (the other two being gas chromatography coupled to mass spectrometry (GC-MS) and liquid chromatography co...

  • Article
  • Open Access
23 Citations
5,929 Views
19 Pages

Tissue-Specific Sample Dilution: An Important Parameter to Optimise Prior to Untargeted LC-MS Metabolomics

  • Zhanxuan E. Wu,
  • Marlena C. Kruger,
  • Garth J.S. Cooper,
  • Sally D. Poppitt and
  • Karl Fraser

When developing a sample preparation protocol for LC–MS untargeted metabolomics of a new sample matrix unfamiliar to the laboratory, selection of a suitable injection concentration is rarely described. Here we developed a simple workflow to add...

  • Article
  • Open Access
11 Citations
6,853 Views
13 Pages

Fine-Mapping of the Human Blood Plasma N-Glycome onto Its Proteome

  • Karsten Suhre,
  • Irena Trbojević-Akmačić,
  • Ivo Ugrina,
  • Dennis O. Mook-Kanamori,
  • Tim Spector,
  • Johannes Graumann,
  • Gordan Lauc and
  • Mario Falchi

Most human proteins are glycosylated. Attachment of complex oligosaccharides to the polypeptide part of these proteins is an integral part of their structure and function and plays a central role in many complex disorders. One approach towards deciph...

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Metabolites - ISSN 2218-1989