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16 pages, 3570 KiB

Open AccessArticle

Insights into the Regulatory Role of MicroRNAs in Penaeus monodon Under Moderately Low Salinity Stress

by Jianzhi Shi, Song Jiang, Yangyang Ding, Hongshan Diao, Wenzhe Li, Yundong Li, Jianhua Huang, Lishi Yang, Qibin Yang and Falin Zhou

Biology 2025, 14(4), 440; https://doi.org/10.3390/biology14040440 - 18 Apr 2025

Viewed by 153

Abstract

MicroRNAs (miRNAs) play crucial roles in regulating various biological processes in crustaceans, including stress responses. Under acute low salinity stress conditions, miRNAs exhibit dynamic expression patterns that significantly influence the physiological and molecular responses of the shrimp. However, research on miRNAs in P. [...] Read more.

MicroRNAs (miRNAs) play crucial roles in regulating various biological processes in crustaceans, including stress responses. Under acute low salinity stress conditions, miRNAs exhibit dynamic expression patterns that significantly influence the physiological and molecular responses of the shrimp. However, research on miRNAs in P. monodon is very limited, and their functions under low salinity stress remain unclear. In this study, by using high-throughput sequencing technology, we identified miRNAs and investigated their regulatory mechanism in P. monodon under low salinity stress. A total of 118 miRNAs were differentially expressed after low salinity exposure. These miRNAs were found to target genes involved in metabolism, pathogen infection, immune response and stress signaling pathways. By modulating the expression of these target genes, miRNAs were able to fine-tune the stress response of P. monodon, thereby enhancing its tolerance to low salinity. This study provides new insights into the regulatory roles of miRNAs in the stress response of aquatic organisms and suggests potential targets for genetic improvement to enhance stress tolerance in P. monodon aquaculture. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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22 pages, 12414 KiB

Open AccessArticle

Cryopreservation Protocol Optimization for Penaeus monodon Sperm: Reagent Screening and Parameter Refinement

by Dewei Kong, Song Jiang, Jianzhi Shi, Qibin Yang, Jianhua Huang, Yundong Li, Yangyang Ding, Jieyi Wang, Xinyu Qi, Tianmi Liu and Falin Zhou

Biology 2025, 14(4), 408; https://doi.org/10.3390/biology14040408 - 11 Apr 2025

Viewed by 166

Abstract

Penaeus monodon (black tiger shrimp) is one of the important shrimp species in aquaculture. Cryopreserving its sperm not only provides technical support for breeding but also effectively prevents the decline of genetic resources, promoting the sustainable development of its aquaculture industry. This study [...] Read more.

Penaeus monodon (black tiger shrimp) is one of the important shrimp species in aquaculture. Cryopreserving its sperm not only provides technical support for breeding but also effectively prevents the decline of genetic resources, promoting the sustainable development of its aquaculture industry. This study screened different types of diluents, cryoprotectants, and concentrations and explored equilibration time, cooling protocols, and thawing conditions, ultimately determining the optimal cryopreservation protocol for P. monodon sperm. The results showed that the optimal cryopreservation protocol involved using natural seawater as the diluent with 10% dimethyl sulfoxide (DMSO) as the cryoprotectant, in which the sperm suspension and cryoprotectant were mixed at a 1:1 (v/v) ratio and equilibrated at 4 °C for 30 min. Subsequently, cooling was performed using a programmable controlled-rate freezer: the temperature was reduced to −20 °C at −5 °C/min and held for 5 min; then cooled to −80 °C at −10 °C/min and held for 5 min; finally, the temperature was reduced to −180 °C at −20 °C/min. After cooling, the sperm samples were transferred to liquid nitrogen for long-term storage. The results demonstrated that thawing in a 37 °C water bath achieved the highest sperm motility compared to conditions at 27 °C, 32 °C, 42 °C, and 60 °C. After 15 days of liquid nitrogen storage, the sperm survival rate was 53.33 ± 9.18%. Scanning electron microscopy (SEM) and transmission electron microscopy (TEM) observations revealed that the sperm structure was intact before freezing, with a rounded head, a distinct acrosomal spike anterior to the head, a concentrated nucleus in the head, dense chromatin, and a smooth cell membrane surface. However, after freezing and thawing, the acrosomal spikes of some sperm were fractured, and the membrane structure was damaged. Enzyme activity analysis showed that during liquid nitrogen storage from 0 to 15 days, the enzyme activity of alkaline phosphatase (AKP) and acid phosphatase (ACP) in sperm gradually increased with significant differences observed compared to day 0 (p < 0.05). The activity of malondialdehyde (MDA) showed a gradual increase at 0, 5, and 10 days, but then decreased at day 15. The enzyme activity of catalase (CAT) showed no significant changes from 0 to 10 days (p > 0.05) but significantly increased on day 15 (p < 0.05). The activity of total superoxide dismutase (T-SOD) showed no significant changes from 0 to 5 days (p > 0.05) but significantly increased from days 10 to 15 (p < 0.05). These findings provide valuable insights into the cryopreservation of P. monodon sperm and will guide the optimization of cryoprotectant combinations and freezing protocols aimed at improving sperm survival rates. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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21 pages, 3211 KiB

Open AccessArticle

Life History Traits and Fishery Dynamics of Speckled Shrimp, Metapenaeus monoceros (Fabricius, 1798), Along the Saudi Arabian Red Sea Coast

by Sheeja Gireesh, Eyüp Mümtaz Tıraşın, Goutham Bharathi Muthu Palani, Santhosh Kumar Charles, Sirajudheen Thayyil Kadengal, Ronald Grech Santucci, Ricardo Clapis Garla, Zahra Okba, Adel M. S. Adam and Mark Dimech

Biology 2025, 14(4), 406; https://doi.org/10.3390/biology14040406 - 11 Apr 2025

Viewed by 796

Abstract

Metapenaeus monoceros is the second most abundant commercially important shrimp species caught along the Saudi Arabian Red Sea coast. However, knowledge of its life history and population dynamics in the region remains limited, posing challenges for sustainable management. This study assessed the growth, [...] Read more.

Metapenaeus monoceros is the second most abundant commercially important shrimp species caught along the Saudi Arabian Red Sea coast. However, knowledge of its life history and population dynamics in the region remains limited, posing challenges for sustainable management. This study assessed the growth, maturity, and mortality of M. monoceros based on fishery-independent samples collected from shrimp trawling grounds off Al Qunfudhah and Jizan (October 2022–September 2023). Altogether, 10,859 specimens were examined, with a carapace length (CL) ranging from 7.98 to 49.10 mm and a total weight (W) in the range of 0.41 to 41.28 g. The observed sex ratio was 1.56:1 in favor of females. The CL–W relationship was W = 0.0024∙CL^2.58. The seasonalized von Bertalanffy growth parameters were CL_∞ = 50.66 mm, K = 0.35 year⁻¹, t_anchor = 0.43 years, C = 0.64, and t_s = 0.61 years for females, and CL_∞ = 38.97 mm, K = 0.55 year⁻¹, t_anchor = 0.51 years, C = 0.84, and t_s = 0.39 years for males. Females reached their first sexual maturity at 21.12 mm CL. The exploitation rates (0.60 for both sexes) indicated overfishing. Spawning potential ratio analysis showed that the current fishing pressure reduces the spawning stock biomass to 23% of unexploited levels. A 50% reduction in fishing effort, extended seasonal closures, and selective gear modifications are recommended to rebuild the stock and ensure sustainability. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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23 pages, 5126 KiB

Open AccessArticle

Investigation of the Influence of Hypercapnia on the Physiology of Ovigerous West Coast Rock Lobsters, Jasus lalandii, and Their Embryonic Development

by Annika Ritter, Christopher R. Bridges and Lutz Auerswald

Biology 2025, 14(2), 132; https://doi.org/10.3390/biology14020132 - 27 Jan 2025

Viewed by 779

Abstract

The West Coast rock lobster, Jasus lalandii, is a key ecological species and provides an important fishery resource in South Africa and Namibia. It is found along the west coast of southern Africa in the dynamic Benguela Current upwelling system. The low [...] Read more.

The West Coast rock lobster, Jasus lalandii, is a key ecological species and provides an important fishery resource in South Africa and Namibia. It is found along the west coast of southern Africa in the dynamic Benguela Current upwelling system. The low seawater pH of this system is expected to decline further due to ocean acidification and increase in upwelling in terms of frequency and severity. The lobster has therefore to respond to frequent and rapid changes in pH and other environmental impacts that are predicted to become more adverse in future. Although responses to such conditions are known for mature male and juvenile lobsters, there is a lack of information on mature females and later embryonic development. We addressed this by analysing the sensitivity of ovigerous (“berried”) female WCRLs and their eggs/embryos to hypercapnia (high pCO₂, low pH) and formulated the following research questions: (1) Can berried female WCRLs respond swiftly to large changes in pH? (2) What physiological mechanisms facilitate a potential response to a rapidly declining pH, i.e., acute hypercapnia? (3) Does a potential response persist during prolonged hypercapnia? (4) Are eggs/embryos impacted by hypercapnia? To investigate this, we exposed berried WCRLs to acute (pH 7.5) and chronic (up to 60 days at pH 7.5 and 7.8) hypercapnia. We applied extracellular acid–base analysis, microscopic examination of egg growth and development, and SEM of female exoskeleton structure and egg membranes. The results revealed that berried females efficiently respond to acute and chronic hypercapnia by means of increasing bicarbonate concentrations in the haemolymph. Moreover, embryo growth and development are not impacted by chronic hypercapnia, but growth shows geographical area-specific differences. We conclude that females and embryos of J. lalandii are as resilient to hypercapnia as previously shown for males and juveniles. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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26 pages, 14325 KiB

Open AccessArticle

Genome-Wide Identification and Expression of Neuropeptides and Their Expression Patterns After RNAi of CHH Genes in Pacific White Shrimp Litopenaeus vannamei

by Long Zhang, Lichao Sun, Guanghao Song, Beibei Wang, Yanting Cui, Fei Liu, Yuquan Li and Zhongkai Wang

Biology 2024, 13(12), 1038; https://doi.org/10.3390/biology13121038 - 11 Dec 2024

Viewed by 997

Abstract

Neuropeptides are pivotal in regulating a broad spectrum of developmental, physiological, and behavioral processes throughout the life cycle of crustaceans. In this comprehensive study, we utilized a multiomics approach to characterize neuropeptide precursors and to assess the expression profiles of neuropeptide-encoding genes across [...] Read more.

Neuropeptides are pivotal in regulating a broad spectrum of developmental, physiological, and behavioral processes throughout the life cycle of crustaceans. In this comprehensive study, we utilized a multiomics approach to characterize neuropeptide precursors and to assess the expression profiles of neuropeptide-encoding genes across various tissues and developmental stages in the Pacific white shrimp, Litopenaeus vannamei. Additionally, we explored the differential expression of neuropeptide genes in the eyestalk before and after the RNA interference-mediated suppression of crustacean hyperglycemic hormone (CHH) and vitellogenesis-inhibiting hormone (VIH) gene expression. Our study identified a total of 125 neuropeptide-encoding genes in L. vannamei, with 54 of these genes previously uncharacterized in the genome. Notably, certain neuropeptide-encoding gene families showed significant expansion, as demonstrated by the discovery of 10 adipokinetic hormone/corazonin-like peptide (ACP) genes, 55 CHH superfamily genes, and 13 pigment-dispersing hormone (PDH) genes. Alternative splicing was also found to play a crucial role in generating functionally diverse neuropeptides; for example, the agatoxin and calcitonin genes undergo alternative splicing that leads to the production of three distinct agatoxin neuropeptides and two distinct calcitonin neuropeptides, respectively. Neuropeptide genes are predominantly expressed in neuroendocrine tissues, including the eyestalk, cerebral ganglia, thoracic ganglia, and ventral ganglia. During the embryonic development of L. vannamei, with the exception of the molt-inhibiting hormone (MIH) gene, all monitored genes display minimal expression from the zygote stage through to the larval in membrane (Lim) stage. In contrast, the majority of these genes exhibit a steady uptick in expression from the nauplius stage onwards, culminating in the post-larval stage. Furthermore, comparative transcriptomic analysis of the eyestalk revealed that the expression of the majority of neuropeptide genes was downregulated following the suppression of CHH and VIH gene expression. This downregulation was significantly associated with the enrichment of pathways related to amino acid metabolism and hormone synthesis. The findings of this study provide valuable insights for future research aimed at elucidating the role of neuropeptides in regulating physiological functions in L. vannamei, potentially leading to advancements in shrimp aquaculture practices. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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14 pages, 1523 KiB

Open AccessArticle

A Comprehensive Assessment of the Nutritional Value, Antioxidant Potential, and Genetic Diversity of Fenneropenaeus merguiensis from Three Different Regions in China

by Yundong Li, Juan Chen, Siyao Cao, Ziyi Jiang, Song Jiang, Qibin Yang, Lishi Yang, Jianhua Huang, Jianzhi Shi, Zhenhua Ma and Falin Zhou

Biology 2024, 13(12), 1002; https://doi.org/10.3390/biology13121002 - 2 Dec 2024

Cited by 2 | Viewed by 924

Abstract

Fenneropenaeus merguiensis is one of the largest species of penaeid shrimp. It has a wide distribution of germplasm resources in the South China Sea and the southeastern coastal regions of China, yet its germplasm characteristics remain insufficiently understood. Therefore, we conducted analyses of [...] Read more.

Fenneropenaeus merguiensis is one of the largest species of penaeid shrimp. It has a wide distribution of germplasm resources in the South China Sea and the southeastern coastal regions of China, yet its germplasm characteristics remain insufficiently understood. Therefore, we conducted analyses of basic nutritional components, amino acids, fatty acids, antioxidant indices, and genetic diversity in three F. merguiensis populations (FmRP, FmSZ, FmSY). The results showed a significant difference in ash content, with FmSZ having the highest ash content (1.77 g/100 g) (p < 0.05). A total of 17 amino acids were detected, and FmSZ exhibited higher concentrations of most amino acids, especially essential amino acids (p < 0.05). The analysis of fatty acid composition revealed significant differences between the populations, with FmSY potentially having a nutritional advantage overall (p < 0.05). In terms of antioxidant capacity and genetic diversity, there were no significant differences in total antioxidant capacity (T-AOC), catalase (CAT), or superoxide dismutase (SOD) among the populations (p > 0.05). However, genetic analysis indicated that FmSZ had the lowest inbreeding coefficient and relatively higher genetic diversity. In conclusion, among the three F. merguiensis populations, FmSZ has relatively higher nutritional quality and genetic diversity, and F. merguiensis is a high-quality aquatic product worth promoting. The analysis and characterization of various aspects of F. merguiensis from the three locations provide important information and data support for germplasm resources and genetic breeding efforts. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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12 pages, 2678 KiB

Open AccessArticle

Development of DNA Markers for Acute Hepatopancreatic Necrosis Disease Tolerance in Litopenaeus vannamei through a Genome-Wide Association Study

by Sukhuman Whankaew, Phassorn Suksri, Ammara Sinprasertporn, Jumroensri Thawonsuwan and Ponsit Sathapondecha

Biology 2024, 13(9), 731; https://doi.org/10.3390/biology13090731 - 18 Sep 2024

Viewed by 1535

Abstract

Shrimp aquaculture is facing a serious disease, acute hepatopancreatic necrosis disease (AHPND), caused by Vibrio paraheamolyticus (Vp_APHND). For sustainable shrimp aquaculture, massive losses of shrimp infected with Vp_APHND must be prevented. Research and selection of shrimp tolerant to Vp_APHND [...] Read more.

Shrimp aquaculture is facing a serious disease, acute hepatopancreatic necrosis disease (AHPND), caused by Vibrio paraheamolyticus (Vp_APHND). For sustainable shrimp aquaculture, massive losses of shrimp infected with Vp_APHND must be prevented. Research and selection of shrimp tolerant to Vp_APHND infection is a sustainable approach to reducing the risk of AHPND. This study focused on the identification and development of potential DNA markers associated with AHPND using DArT sequencing (DArTSeq) and a genome-wide association study. Three populations of post-larval Litopenaeus vannamei were immersed in Vp_APHND to collect susceptible (D) and tolerant (S) samples. The 45 D and 48 S shrimp had their genotypes analyzed using DArTSeq. A total of 108,983 SNPs and 17,212 InDels were obtained from the DArTseq data, while the biallelic 516 SNPs and 2293 InDels were finally filtered with PIC < 0.1, MAF < 0.05, and a call rate ≥ 80%. The filtered variants were analyzed for their association with AHPND tolerance. Although there were no significantly associated SNPs and InDels above the Bonferroni correction threshold, candidate variants, four SNPs and 17 InDels corresponding to p < 0.01, were provided for further validation of the AHPND tolerance trait. The candidate SNPs are located on an exon of the zinc finger protein 239-like gene, an intron of an uncharacterized gene, and in intergenic regions. Most of the candidate InDels are in the intergenic regions, with fewer in the intronic and exonic regions. This study provides information on SNPs and InDels for white shrimp. These markers will support the variant database of shrimp and be useful in shrimp aquaculture for breeding selection. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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17 pages, 1880 KiB

Open AccessArticle

Comparative Study of Nutritional Composition, Physiological Indicators, and Genetic Diversity in Litopenaeus vannamei from Different Aquaculture Populations

by Yundong Li, Siyao Cao, Shigui Jiang, Jianhua Huang, Qibin Yang, Song Jiang, Lishi Yang and Falin Zhou

Biology 2024, 13(9), 722; https://doi.org/10.3390/biology13090722 - 14 Sep 2024

Cited by 4 | Viewed by 1674

Abstract

This study aimed to evaluate the quality and genetic diversity of farmed Litopenaeus vannamei across three distinct populations from Maoming City (MM), Zhanjiang City (ZJ), and Yangjiang City (YJ) in Guangdong Province. Muscle tissues from L. vannamei were analyzed for phenotypic traits, conventional [...] Read more.

This study aimed to evaluate the quality and genetic diversity of farmed Litopenaeus vannamei across three distinct populations from Maoming City (MM), Zhanjiang City (ZJ), and Yangjiang City (YJ) in Guangdong Province. Muscle tissues from L. vannamei were analyzed for phenotypic traits, conventional nutrients, amino acids, and fatty acids, while genetic diversity was assessed using whole genome sequencing techniques. The analysis revealed that the crude protein content in shrimp across the three populations ranged from 20.87 to 21.95 g/100 g, crude fat content ranged from 0.90 to 1.50 g/100 g, essential amino acid content ranged from 5.55 to 5.86 g/100 g, total amino acid content ranged from 14.73 to 15.27 g/100 g, total fatty acid content ranged from 682.73 to 793.97 mg/100 g, total antioxidant capacity (T-AOC) ranged from 2.68 to 2.72 μmol/g, superoxide dismutase (SOD) activity ranged from 1021.97 to 1057.21 U/g, and catalase (CAT) activity ranged from 78.65 to 81.33 μmoL/min. No significant differences were observed in ash and crude fat levels among conventional nutrients, nor in the biochemical indexes T-AOC, CAT, and SOD. Genetic analysis showed that the single nucleotide polymorphism density (SNP/Kb) ranged from 15.323 to 17.461, nucleotide diversity (π) ranged from 2.98 × 10⁻⁵ to 15.84 × 10⁻⁵, polymorphism information content (PIC) ranged from 0.300 to 0.317, heterozygosity (Ho) ranged from 0.033 to 0.048, and inbreeding coefficients (FIS) ranged from 0.834 to 0.887. The genetic differentiation index (FST) values among the three populations ranged from 0.056 to 0.106. This study provides an evaluation of the germplasm resources and genetic diversity of farmed L. vannamei, offering insights for the efficient management and sustainable utilization of this species’ germplasm resources. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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12 pages, 3795 KiB

Open AccessArticle

Corazonin Stimulates Ecdysteroid Synthesis during the Molting Process of the Swimming Crab, Portunus trituberculatus

by Xi Xie, Jun Zhang, Shisheng Tu, Qi Zhou and Dongfa Zhu

Biology 2024, 13(8), 630; https://doi.org/10.3390/biology13080630 - 18 Aug 2024

Cited by 2 | Viewed by 1263

Abstract

The neuropeptide corazonin (Crz) exerts diverse physiological effects in insects, yet its role in crustaceans remains elusive. The abundant expression of Crz receptor (CrzR) in the Y-organs of several crustaceans suggests a potential involvement of Crz in regulating ecdysteroid synthesis. In this study, [...] Read more.

The neuropeptide corazonin (Crz) exerts diverse physiological effects in insects, yet its role in crustaceans remains elusive. The abundant expression of Crz receptor (CrzR) in the Y-organs of several crustaceans suggests a potential involvement of Crz in regulating ecdysteroid synthesis. In this study, we examined the effects of PtCrz on ecdysteroid synthesis during the molting period of Portunus trituberculatus through PtCrz treatments and PtCrzR silencing. Our results showed that PtCrz peptide stimulates ecdysteroid levels and the gene expression involved in ecdysteroidogenesis both in vitro and in vivo, whereas dsPtCrzR treatments had opposite effects on ecdysteroid levels and associated gene expression. Thus, our study suggests that PtCrz may modulate ecdysteroid synthesis via Y-organ-expressed PtCrzR. Furthermore, we also discovered the involvement of PtCrz/PtCrzR signaling in regulating PtETH expression. Notably, the inhibitory effect of dsPtCrzR on ecdysteroid synthesis or PtETH expression can be reversed by PtCrz treatment, suggesting the potential existence of multiple receptors for PtCrz. This study provides new insights into the function of crustacean Crz and, for the first time, elucidates the presence of a neuropeptide that can stimulate ecdysteroid synthesis in crustaceans. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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19 pages, 12201 KiB

Open AccessArticle

Effects of Different Salinity Stress on the Transcriptomic Responses of Freshwater Crayfish (Procambarus clarkii, Girard, 1852)

by Lei Luo, Li-Shi Yang, Jian-Hua Huang, Shi-Gui Jiang, Fa-Lin Zhou, Yun-Dong Li, Song Jiang and Qi-Bin Yang

Biology 2024, 13(7), 530; https://doi.org/10.3390/biology13070530 - 16 Jul 2024

Cited by 2 | Viewed by 1859

Abstract

Salinization of freshwater ecosystems is a pressing global issue. Changes in salinity can exert severe pressure on aquatic animals and jeopardize their survival. Procambarus clarkii is a valuable freshwater aquaculture species that exhibits some degree of salinity tolerance, making it an excellent research [...] Read more.

Salinization of freshwater ecosystems is a pressing global issue. Changes in salinity can exert severe pressure on aquatic animals and jeopardize their survival. Procambarus clarkii is a valuable freshwater aquaculture species that exhibits some degree of salinity tolerance, making it an excellent research model for freshwater aquaculture species facing salinity stress. In the present study, crayfish were exposed to acute low salt (6 ppt) and high salt (18 ppt) conditions. The organisms were continuously monitored at 6, 24, and 72 h using RNA-Seq to investigate the mechanisms of salt stress resistance. Transcriptome analysis revealed that the crayfish responded to salinity stress with numerous differentially expressed genes, and most of different expression genes was observed in high salinity group for 24h. GO and KEGG enrichment analyses indicated that metabolic pathways were the primary response pathways in crayfish under salinity stress. This suggests that crayfish may use metabolic pathways to compensate for energy loss caused by osmotic stress. Furthermore, gene expression analysis revealed the differential expression of immune and antioxidant-related pathway genes under salinity stress, implying that salinity stress induces immune disorders in crayfish. More genes related to cell proliferation, differentiation, and apoptosis, such as the Foxo, Wnt, Hippo, and Notch signaling pathways, responded to high-salinity stress. This suggests that regulating the cellular replication cycle and accelerating apoptosis may be necessary for crayfish to cope with high-salinity stress. Additionally, we identified 36 solute carrier family (SLC) genes related to ion transport, depicting possible ion exchange mechanisms in crayfish under salinity stress. These findings aimed to establish a foundation for understanding crustacean responses to salinity stress and their osmoregulatory mechanisms. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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11 pages, 8056 KiB

Open AccessArticle

Statocyst Ultrastructure in the Norwegian Lobster (Nephrops norvegicus)

by Marta Solé

Biology 2024, 13(5), 325; https://doi.org/10.3390/biology13050325 - 7 May 2024

Viewed by 1661

Abstract

Statocyst anatomy and fine morphology in Norwegian lobster (Nephrops norvegicus) are studied for the first time using scanning and transmission electron microscopy. N. norvegicus exhibits sensory setae projecting from the statocyst inner cavity floor into a mass of sand granules (statoconia) [...] Read more.

Statocyst anatomy and fine morphology in Norwegian lobster (Nephrops norvegicus) are studied for the first time using scanning and transmission electron microscopy. N. norvegicus exhibits sensory setae projecting from the statocyst inner cavity floor into a mass of sand granules (statoconia) embedded in a gelatinous substance. The setae are distributed in four areas: a curved field made up of an inner single row and an outer double row that run on a circle around the medial and lateral rim of the central depression, a small setal field in the posterior part, a large setal field, opposite to the small field, and a short row, running internally and lying parallel to the inner single row, next to the small setal field. A study of the fine morphology of the statocyst sensory setae shows that the structure of the setae in the different areas is similar, with a bulb (the proximal portion of the sensillum), a setal shaft, a tooth (the smooth portion of the bulb), a fulcrum (a transverse fold), and filamentous hairs. The hair cells are firmly implanted within the cuticular layer. Although the type of innervation of the statocyst was not determined in the present study, the close taxonomic position of the lobster to that of the crayfish and crab would suggest that the setae in N. norvegicus are pure mechanoreceptors rather than sensory cells. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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14 pages, 1720 KiB

Open AccessArticle

Analysis of Elimination Effects of Inbreeding on Genotype Frequency in Larval Stages of Chinese Shrimp

by Qiang Fu, Jingxin Zhou, Sheng Luan, Ping Dai, Ding Lyu, Baolong Chen, Kun Luo, Jie Kong and Xianhong Meng

Biology 2024, 13(4), 268; https://doi.org/10.3390/biology13040268 - 17 Apr 2024

Viewed by 1933

Abstract

Marine animals possess genomes of considerable complexity and heterozygosity. Their unique reproductive system, characterized by high fecundity and substantial early mortality rates, increases the risk of inbreeding, potentially leading to severe inbreeding depression during various larval developmental stages. In this study, we established [...] Read more.

Marine animals possess genomes of considerable complexity and heterozygosity. Their unique reproductive system, characterized by high fecundity and substantial early mortality rates, increases the risk of inbreeding, potentially leading to severe inbreeding depression during various larval developmental stages. In this study, we established a set of inbred families of Fenneropenaeus chinensis, with an inbreeding coefficient of 0.25, and investigated elimination patterns and the manifestations of inbreeding depression during major larval developmental stages. Reduced-representation genome sequencing was utilized to explore the genotype frequency characteristics across two typical elimination stages. The results revealed notable mortality in hatching and metamorphosis into mysis and post-larvae stages. Inbreeding depression was also evident during these developmental stages, with depression rates of 24.36%, 29.23%, and 45.28%. Segregation analysis of SNPs indicated an important role of gametic selection before hatching, accounting for 45.95% of deviation in the zoea stage. During the zygotic selection phase of larval development, homozygote deficiency and heterozygote excess were the main selection types. Summation of the two types explained 82.31% and 89.91% of zygotic selection in the mysis and post-larvae stage, respectively. The overall distortion ratio decreased from 22.37% to 12.86% in the late developmental stage. A total of 783 loci were identified through selective sweep analysis. We also found the types of distortion at the same locus could change after the post-larvae stage. The predominant shifts included a transition of gametic selection toward normal segregation and other forms of distortion to heterozygous excess. This may be attributed to high-intensity selection on deleterious alleles and genetic hitchhiking effects. Following larval elimination, a greater proportion of heterozygous individuals were preserved. We detected an increase in genetic diversity parameters such as expected heterozygosity, observed heterozygosity, and polymorphic information content in the post-larvae stage. These findings suggest the presence of numerous recessive deleterious alleles and their linkage and suggest a major role of the partial dominance hypothesis. The results provide valuable insights into the mechanisms of inbreeding depression in marine animals and offer guidance for formulating breeding strategies in shrimp populations. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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23 pages, 3201 KiB

Open AccessArticle

Effects of Dietary Gracilaria lichenoides and Bacillus amyloliquefaciens on Growth Performance, Antioxidant Capacity, and Intestinal Health of Penaeus monodon

by Jialin Tian, Yun Wang, Jianhua Huang, Hailiang Yan, Yafei Duan, Jun Wang, Chuangpeng Zhou and Zhong Huang

Biology 2024, 13(4), 252; https://doi.org/10.3390/biology13040252 - 9 Apr 2024

Cited by 1 | Viewed by 2220

Abstract

This research sought to assess the effects of dietary supplements with Gracilaria lichenoides and Bacillus amyloliquefaciens, either individually or combined, on the growth performance, antioxidant capacity, and intestinal function of Penaeus monodon. A total of 840 shrimps were randomly assigned to [...] Read more.

This research sought to assess the effects of dietary supplements with Gracilaria lichenoides and Bacillus amyloliquefaciens, either individually or combined, on the growth performance, antioxidant capacity, and intestinal function of Penaeus monodon. A total of 840 shrimps were randomly assigned to 28 tanks with an average initial weight of (1.04 ± 0.03) g (30 shrimp per tank) with 7 different treatment groups and 4 replicates per treatment. The control treatment (C) consisted of a basal diet; in contrast, the experimental groups were complement with varying levels of G. lichenoides (3% or 8%), either alone (S3 and S8) or in combination with B.amyloliquefaciens at different concentrations (3% G. lichenoides and 10⁹ CFU/g—S3B9; 8% G. lichenoides and 10¹¹ CFU/g B. amyloliquefaciens—S8B11; 10⁹ CFU/g B. amyloliquefaciens—S9; 10¹¹ CFU/g B. amyloliquefaciens—B11). The results indicated that the maximum values of final body weight (FBW) (10.49 ± 0.90) g, weight gain rate (WGR) (908.94 ± 33.58) g, and specific growth rate (SGR) (4.20 ± 0.06) g were perceived in the 3% G. lichenoide diet treatment, and compared with the control group, the difference was significant (p < 0.05). The whole-body lipid content of shrimp in the B9 group was significantly higher than that in the B11 group (p < 0.05), but no significant difference was observed when compared with shrimp fed other diets (p > 0.05). The ash content of shrimp in the B9 group was found to be significantly higher than that in the S3B9 group (p < 0.05). Furthermore, the lipase activity in the stomach and intestines of the experimental groups exhibited a statistically significantly increase compared to the control (p < 0.05). In comparison to the control group, the hepatopancreas of the S3 group exhibited a significant increase in the activities of glutathione peroxidase (GSH-Px), superoxide dismutase (SOD), and antioxidant genes [SOD, catalase (CAT), GSH-Px, thioredoxin (Trx), Hippo, and NF-E2-related factor 2 (Nrf2)] expression levels (p < 0.05). Additionally, the activities of total antioxidant capacity (T-AOC), SOD, peroxidase (POD), and antioxidant genes (CAT, GSH-Px, Trx, and Hippo) in the S3B9 treatment of hepatopancreas showed significant improvement (p < 0.05). The inclusion of dietary G. lichenoides and B. amyloliquefaciens resulted in enhanced relative expression of intestinal lipid metabolism genes (fatty acid synthetase (FAS), lipophorin receptor (LR), fatty acid transport protein 1 (FATP1)) and suppressed the expression of the long-chain fatty acid-CoA ligase 4 (LCL4) gene. Analysis of microbiota sequencing indicated improvements in composition and structure, with notable increases in Firmicutes at the phylum level and Vibrio at the genus level in the S3 group, as well as an increase in Tenericutes at the genus level in the S8B11 group. Overall, the inclusion of dietary G. lichenoides and B. amyloliquefaciens positively impacted the growth, antioxidant capacity, and microbial composition of shrimp, with particular enhancement observed in shrimp fed a supplementary 3% G. lichenoides diet. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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14 pages, 2989 KiB

Open AccessArticle

Comparative Transcriptome Analysis of the Response to Vibrio parahaemolyticus and Low-Salinity Stress in the Swimming Crab Portunus trituberculatus

by Dongfang Sun, Jianjian Lv, Yukun Li, Jie Wu, Ping Liu and Baoquan Gao

Biology 2023, 12(12), 1518; https://doi.org/10.3390/biology12121518 - 12 Dec 2023

Cited by 1 | Viewed by 2014

Abstract

Vibrio parahaemolyticus is one of the main pathogenic bacteria of Portunus trituberculatus and causes mass mortality of P. trituberculatus in aquaculture. In addition, low-salinity stimulation makes P. trituberculatus more susceptible to V. parahaemolyticus infections. In order to elucidate the molecular mechanism of resistance [...] Read more.

Vibrio parahaemolyticus is one of the main pathogenic bacteria of Portunus trituberculatus and causes mass mortality of P. trituberculatus in aquaculture. In addition, low-salinity stimulation makes P. trituberculatus more susceptible to V. parahaemolyticus infections. In order to elucidate the molecular mechanism of resistance to V. parahaemolyticus in P. trituberculatus, comparative transcriptomic analysis of blood cells stimulated by low salinity and V. parahaemolyticus was carried out in this study. Transcriptome sequencing of low-salinity stress and pathogen infection at different time points was completed using Illumina sequencing technology. A total of 5827, 6432, 5362 and 1784 differentially expressed genes (DEGs) involved in pathways related to ion transport and immunoregulation were found under low-salinity stress at 12, 24, 48 and 72 h compared with the control at 0 h. In contrast, 4854, 4814, 5535 and 6051 DEGs, which were significantly enriched in Toll and IMD signaling pathways, were found at 12, 24, 48 and 72 h compared with the control at 0 h under V. parahaemolyticus infection. Among them, 952 DEGs were shared in the two treatment groups, which were mainly involved in apoptosis and Hippo signaling pathway. Cluster analysis screened 103 genes that were differentially expressed in two factors that were negatively correlated, including immunoglobulin, leukocyte receptor cluster family, scavenger receptor, macroglobulin and other innate-immune-related genes. These results provide data support for the analysis of the mechanisms of immunity to V. parahaemolyticus under low-salinity stress in P. trituberculatus and help to elucidate the molecular mechanisms by which environmental factors affect immunity. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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15 pages, 1488 KiB

Open AccessArticle

Evidence of Considerable Shifts in Catch Composition in the Artisanal Spiny Lobster Fishery in Kenya

by Abdirahman J. Kulmiye

Biology 2023, 12(12), 1477; https://doi.org/10.3390/biology12121477 - 29 Nov 2023

Cited by 1 | Viewed by 1757

Abstract

The artisanal lobster fishery in Kenya is small in world terms but important locally both in terms of supporting local fishing communities and generating revenue for the government. Despite its socioeconomic importance, detailed knowledge of many aspects of the fishery is lacking. The [...] Read more.

The artisanal lobster fishery in Kenya is small in world terms but important locally both in terms of supporting local fishing communities and generating revenue for the government. Despite its socioeconomic importance, detailed knowledge of many aspects of the fishery is lacking. The study reported herein aimed to investigate and provide information on the population structure and catch composition of spiny lobsters caught by artisanal fishers off six major landing sites along the coastline. A total of 2711 lobsters representing five palinurid species were collected during the study period (November 2000–March 2001). Among the five species, Panulirus longipes dominated the catches in Msambweni (75%) and Shimoni (58%), P. homarus in Mambrui (70%) and Kipini (72%), P. ornatus in Lamu (49%), and P. penicillatus in Kilifi (39%). P. versicolor was the rarest species observed in the catches across the six sites. The overall catch consisted of 33% P. ornatus, 32% P. homarus, 28% P. longipes, 6% P. penicillatus and 2% P. versicolor. Sitewise, Lamu contributed 31% of the overall catch, Kipini 23%, Shimoni 20%, Mambrui 13%, Msambweni 7%, and Kilifi 6%. A comparison of the results of this study and lobster abundance data from 1970s surveys revealed considerable shifts in the catch composition of artisanal landings over time. Future work on this fishery should concentrate on the lobster populations in the decades-old marine protected areas to obtain unfished reference data to assess the fishery and establish the underlying cause(s) of the observed shifts in catch composition. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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17 pages, 2496 KiB

Open AccessArticle

Molecular Phylogeny and Evolution of the Tuerkayana (Decapoda: Brachyura: Gecarcinidae) Genus Based on Whole Mitochondrial Genome Sequences

by Zhengfei Wang, Yuqing Zheng, Xinyue Zhao, Xinyi Xu, Zhiwen Xu and Chong Cui

Biology 2023, 12(7), 974; https://doi.org/10.3390/biology12070974 - 8 Jul 2023

Cited by 3 | Viewed by 2044

Abstract

Tuerkayana is of particular interest because it has been separated, in recent years, from Cardisoma and Discoplax but studies of its taxonomic status, especially from a whole mitochondrial genome perspective, have been lacking. In this study, the mitogenomes of four species (Tuerkayana [...] Read more.

Tuerkayana is of particular interest because it has been separated, in recent years, from Cardisoma and Discoplax but studies of its taxonomic status, especially from a whole mitochondrial genome perspective, have been lacking. In this study, the mitogenomes of four species (Tuerkayana magnum, Tuerkayana rotundum, Tuerkayana hirtipes, and Tuerkayana celeste) of Tuerkayana are sequenced and contrasted with other species in Brachyura for the first time. The phylogenetic tree of Brachyura, which includes 206 crab species (189 species of Brachyuran and 17 Anomura species) with a complete mitogenome, was constructed to evaluate the phylogenetic position of Tuerkayana and Gecarcinidae within Brachyuran, and explore the monophyly of Gecarcinidae. Furthermore, two single gene trees based on cox1 and 16SrRNA separately within interspecies of Gecarcinidae were reconstructed, providing molecular evidence for Tuerkayana and further clarifying the division of genera in Gecarcinidae. Based on the mitogenome dataset of 206 crabs, the branch-site model was utilized to explore selective pressure in individual codons with CodeML. The strong selective pressure shown in nad6 indicates that it may have played a significant role in the evolution of Gecarcinidae. Full article

(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)

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