Editor’s Choice Articles

Globally, over 85% of oyster reefs have been lost, and the combined effects of climate change, ocean acidification, and environmental degradation, including pollution and mangrove overharvesting, could further reduce global oyster fisheries in the coming decades. To understand the level of impact of climate change on the oyster fishery in West Africa, an expert-based vulnerability assessment to climate change was conducted for the West African mangrove oyster (Crassostrea tulipa, Lamarck 1819). Using a combination of the exposure of the oyster to climatic stressors (estuarine temperature, salinity, river flow, surface run-off, sea level rise, and estuarine circulation) together with an assessment of sensitivity to these stressors, we estimate the overall vulnerability of C. tulipa to climate change. A very high overall climate vulnerability score of 12 on a scale of 16 was calculated for C. tulipa. While the overall climate exposure score in the West African coastal region remained high, the high sensitivity of C. tulipa to hydrographic conditions of its habitat, in particular salinity, coupled with its sessile and habitat-specific nature, pushed the overall vulnerability to very high. Early life history settlement requirements, adult mobility, and sensitivity to salinity were the three most important biological and sensitivity attributes that determined the vulnerability score. By leaving each of these three sensitivity attributes out of the analysis, the overall vulnerability score was reduced to 9 (i.e., from very high to high). A negative directional effect of climate change, coupled with a low potential for change in distribution, threatens the C. tulipa fishery in a long-term adverse climate scenario. We recommend management efforts that incorporate climate resilience and adaptation practices to prioritize recruitment success, as well as the development of breeding lines with climate-resilient traits. Full article

Accurate checklists of species are essential for evaluating their conservation status and for understanding more about their distribution, biology and ecology and, therefore, the first step in order to effectively protect them. According to the existing literature, the Greek seas are rich in chondrichthyan biodiversity and herein, we update the most recent chondrichthyan checklist for the country regarding the species that are present in the Greek waters, correct unvalidated miscellaneous sightings and observations and provide guidelines about future research to improve their conservation. In total, 330 sources were collected from which 276 were used for further analysis, resulting in 1485 records of 67 species, among which 61 are confirmed by experts, including 34 sharks, 26 batoids and one chimaera. We are further listing six species as “Questionable/Not Confirmed”. Full article

Zebrafish (Danio rerio) are becoming one of the most important model organisms in behavioural neuroscience. It has been shown repeatedly that different zebrafish strains show large behavioural differences. These divergent behavioural profiles may have a genetic basis, but environmental factors and previous experience are also known to greatly affect the behavioural phenotype of zebrafish. It could be expected that behavioural differences at the larval stage should be less affected by environmental factors and experience. In the present study, we screened larvae of zebrafish of the AB strain and offspring of wild-caught zebrafish for boldness, using an open field test. In order to follow the behavioural development, we studied larvae at the age of 5-, 7-, 12- and 30-days post fertilization (dpf). Behaviour, as well as behavioural development, clearly differed between the larvae of the different strains. Wild larvae showed larger total distance moved than AB larvae, both at light and dark conditions. These differences were already present at 12 dpf but became more pronounced with age. Wild larvae had a greater variance compared to AB larvae for most of the variables. We have previously shown that bold and shy adult zebrafish differ in the brain expression of dopamine and opioid receptors. The results of the current study show that wild larvae display significantly higher brain expression of drd2b than AB larvae at 30 dpf, a difference that could be related to differences in activity. We did not detect any differences in the expression of opioid receptors. Full article

Climate change is a growing threat to marine organisms and ecosystems, and it is already modifying ocean properties by, for example, increasing temperature and decreasing pH. Increasing water temperature may also lead to an impairment of primary productivity and an overall depletion of available zooplankton. Understanding how the crossover between warming and zooplankton availability impacts fish populations has paramount implications for conservation and mitigation strategies. Through a cross factorial design to test the effects of ocean temperature and food availability in a temperate marine teleost, Pomatochistus flavescens, we showed that hindered feeding impacted sheltering and avoidance behaviour. Also, low food availability impaired fish reproduction, particularly male reproduction, as the expression of cyp11b1, a gene with a pivotal role in the synthesis of the most important fish androgen, 11-ketotestosterone, was significantly reduced under a low food regime. In contrast, temperature alone did not affect reproductive success, but offspring showed increased saturated fatty acid content (embryos) and increased lipid peroxidation (larvae). Altogether, food availability had a stronger effect on fitness, showing that coping with elevated temperatures, an ability that may be expected in shallow-water fish, can be indirectly impacted, or even overwhelmed, by the effects of ocean warming on primary productivity and downstream ecological processes. Full article

Fish represent an excellent source of animal protein as well as a biomedical research model as a result of their evolutionary relatedness and similarity with the human genome. Commercial and ornamental fish culture has achieved popularity, but reproductive dysfunctions act as a limiting factor for quality fry production, interfering with the sustainability of the aquaculture industry. Fish reproduction is crucial for any species’ existence, and reproductive performance can potentially be improved through applications of epigenetics and probiotics. Epigenetics is a highly sensitive molecular approach that includes chromatin structure and function alteration, DNA methylation, and modification of non-coding RNA molecules for the transfer of desired information from parents to offspring. DNA methyltransferase improves reproductive cyp11a1, esr2b, and figla gene expression and feminizes zebrafish (Danio rerio). Moreover, epigenetics also contributes to genome stability, environmental plasticity, and embryonic development. However, methylation of specific genes can negatively affect sperm quality, resulting in poor fertilization. Probiotic administration is able to induce responsiveness of incompetent follicles to maturation-inducing hormones and can change oocyte chemical composition during vitellogenic development. The positive role of probiotics on testicular cells is validated by upregulating the transcription levels of leptin, bdnf, and dmrt1 genes facilitating the spermatogenesis. This review not only discusses the effects and mechanism of epigenetics and probiotics for improving fish reproduction, but also presents an overview of the causal factors and current techniques used to eradicate dysfunction. Moreover, key genes and hormones related to fish reproduction along with research gaps and future prospects are also considered. This review provides an overview of necessary information for students, scientists, researchers, and breeders to resolve fish reproduction-related problems to ensure profitable and sustainable aquaculture. Full article

This study aimed to explore the feasibility of using an upper beak microstructure to estimate the age of purpleback flying squid (Sthenoteuthis oualaniensis). From these microstructures, the age and growth of squid caught from January to March and May to August in 2018, 2019, and 2020 in the waters surrounding the Xisha Islands in the South China Sea were determined. We found three typical growth zones (the hood region, crest region, and axis), abnormal increments (checks), and erosion in the beak examination. The average dorsal mantle length (ML) of males and females was 112.13 (±15.23 mm) and 119.67 mm (±24.50 mm), respectively, and no squid were older than 10 months. The peak hatching dates, according to back calculations, were from October to January of the next year. All sampled squid belonged to the autumn/winter cohort. Significant sex differences were found in the relationship between ML and age in squid with similar growth patterns. Exponential models best described the relationships of ML with age and body weight (BW) for both sexes. However, a linear model best described the relationship between age and upper rostrum length (URL). The maximum absolute daily growth rates (AGR) of BW were reached during days 240–270 for both sexes. The maximum AGRs in ML were reached during days 180–210 and 240–270 for males and females, respectively. The period of 120–150 days (4–5 months) was considered the sub-adult stage of S. oualaniensis in the Xisha Islands waters of the South China Sea. This study confirmed that the beak microstructure provides good age estimates for purpleback flying squid (S. oualaniensis). Full article

The silky shark, Carcharhinus falciformis is one of the most heavily exploited sharks, being the main by-catch species in both tuna longline and purse-seine fisheries in tropical waters worldwide. Despite this severe exploitation, little is known about the species’ life history and population status. Silky sharks, like many other sharks, exhibit slow growth and low fecundity, indicating the urgency of developing assessment studies to aid in the implementation of conservation plans for their stocks. Because information on the catch and effort of this species is scarce, some length-based data-limited methods were applied in the present study to provide estimates of the status of the tropical Pacific silky shark population. As evident from the LBSPR analysis, the current spawning potential ratio (SPR) was found to be below the target reference point of SPR 40% and slightly above the limit reference point of SPR 20%. In addition, the LBB model also confirmed that this stock’s status is overfished with relatively low biomass levels. Furthermore, both models showed estimates of size selectivity at 50% and 95% that were lower than the estimated size at sexual maturity. In conclusion, the data-limited models developed in this study indicated that the silky shark stock in the tropical Pacific Ocean may be at risk of further decline. Additionally, the results show that growth and recruitment overfishing may be occurring in the silky shark’s population calling for immediate intensification of monitoring programs for these sharks as a pre-requisite to develop efficient management and conservation plans in the Pacific Ocean. Full article

After collapsing in the late 1990s, the southern Gulf of St. Lawrence population of striped bass (Morone saxatilis) is recovering. Here, we evaluate the use of under-ice eDNA sampling to monitor the population and confirm overwintering locations. From 2018 to 2020, water samples were collected from transects spanning 35 km of the Miramichi River system, accounting for the effects of sampling site, month, sampling depth and tidal influence on eDNA concentration. We examined the distribution of eDNA in a complex tidal river system with a time series consisting of 12 h of continuous sampling throughout a tidal cycle, in conjunction with the use of artificial DNA tracers and acoustic Doppler current profiler flow measurements. The eDNA distribution correctly identified overwintering grounds based on acoustic tag data, including a perceptible upstream shift in 2020. Overall, there was no significant effect of year, sampling month (February or March), sampling depth or tidal phase on eDNA concentrations. The tidal time series revealed only weak patterns of eDNA recirculation. Monitoring eDNA concentration and distribution allows for a relative comparison of population size and location between years, and has the potential to be expanded to other river systems more easily than traditional acoustic fish tags and surveys. Full article

Brown trout of non-native lineages have been stocked into Croatian streams and rivers primarily to meet angler demand. The diet of brown trout in the Black Sea Basin of Croatia is poorly understood, and there are no studies examining feeding competition between the Atlantic (AT) and Danube (DA) lineages of brown trout and their hybrids (HY). The aim of this study was to examine the natural diet of brown trout of both lineages and their hybrids and to compare feeding overlap. Canonical correspondence analysis was used to investigate the relationships between feeding habits of fish from different streams and of different genetic origin. The differences in variation of the consumed prey items were analysed by canonical variate analysis, and diet overlap was assessed by the Schoener index. The results indicate that stocked brown trout (AT) adapt rapidly to new habitat and food, as revealed by the consumption of a wide range of available food items and competition for food and space by taking on the feeding behaviour of wild native conspecifics. Diet overlap was also detected between brown trout of the DA and AT lineages. This study highlights the need to implement control measures to preserve and protect the native diversity of this species. Full article

At present, the resources of anadromous fish in the world are drastically reduced and one of the solutions to promote its recovery may be to identify and protect its feeding grounds. To determine whether the feeding grounds of anadromous Coilia nasus in the Yangtze River are still in the sea area, the quantitative line analysis of Sr and Ca contents (Sr/Ca ratios) and the area distribution analysis of Sr content in the otoliths of C. nasus in three water areas (Poyang Lake, Yangtze River estuary and Shengsi Sea area) were carried out by electron probe microanalysis (EPMA) to analyze the habitat use and the migratory patterns of different estuarine C. nasus. These results showed that the Sr/Ca ratios of all otoliths fluctuated significantly. By comparison, it was found that C. nasus of Yangtze River might exist in the Shengsi Sea area, and the Shengsi Sea area might be one of the feeding grounds of migratory C. nasus. Therefore, it is urgent to carry out a comprehensive investigation on the distribution of related groups in the Shengsi Sea area and the influence of potential threat factors, such as fishing and harsh habitat, to effectively protect the resources and habitats of C. nasus in the Shengsi Sea area. Full article

Merluccius merluccius is one of the most important Mediterranean benthopelagic predators. It represents a key species for the ecosystem’s functioning due to its fundamental role in the energy transferal between different domains and depth strata. The aim of this study was to explore the feeding habits of European hakes in the southern and central Mediterranean Sea, and also to analyze timescale variations and ontogenetic shift in five size length classes. A total of 411 stomachs collected from 2018 to 2020 were analyzed to assess diet and feeding habits. Results confirmed hakes’ role as a generalist benthopelagic predator, preying both in the suprabenthic layer and in the entire water column. Concerning the ontogenetic diet shift, juvenile hakes prefer zooplanktonic prey, while larger hakes have a diet mainly based on teleosts and decapods. The variations in diet composition between years, characterized by a fluctuation of cephalopods, bioluminescent teleost species and mesopelagic crustaceans, have highlighted the ability of European hake to model its diet to the geographical and prey availability. These features make analysis of the diet of M. merluccius essential to understanding the trophic dynamic existing in bentho-meso-pelagic environments, to improve ecosystem conservation in accordance with ecosystem-based fishery management. Full article

2,4-Dichlorophenoxyacetic acid (2,4-D) is commonly used to control invasive aquatic macrophytes, including Eurasian watermilfoil (Myriophyllum spicatum) (EWM). Potential influences of 2,4-D on non-target organisms are poorly understood; however, research has suggested the possibility of lethal effects on certain fish species. Lake Ellwood, Wisconsin was treated with 2,4-D to control EWM annually during 2003–2012. Fish surveys following treatment revealed natural recruitment failures of several regionally thriving species, including largemouth bass (Micropterus salmoides) and bluegill (Lepomis macrochirus). We hypothesized that these species had been negatively influenced by the chemical treatments. We monitored the post-chemical treatment fish community and aquatic ecosystem for responses during 2013–2019. Similar data were collected from Cosgrove (EWM absent) and Seidel lakes (EWM present, no chemical treatment) as reference systems. Limnological and submersed aquatic vegetation conditions did not change on Lake Ellwood post-chemical treatment. Total zooplankton density increased immediately post-chemical treatment on Lake Ellwood and then stabilized, whereas total zooplankton density did not change on the reference lakes over time. Analyses indicated immediate increases in recruitment post-chemical treatment for largemouth bass, smallmouth bass (Micropterus dolomieu), bluegill, and yellow perch (Perca flavescens). Back calculation of year class strength confirmed failures occurred during treatment for northern pike (Esox lucius), largemouth bass, bluegill, and black crappie (Pomoxis nigromaculatus). Our results provide evidence to suggest long-term 2,4-D treatments may negatively influence fish through lethal and sublethal mechanisms. Thus, there remains a critical need for directed research on whole-lake herbicide treatment side-effects. Full article

Recent efforts have provided convincing evidence for the use of fish scale cortisol concentration in the assessment of long-term stress in fishes. However, cortisol alone is not sufficient to fully describe this state of long-term stress. Dehydroepiandrosterone (DHEA) is an androgen with actions that oppose those of cortisol. The means by which DHEA negates the effects of cortisol occurs in part via changes in the metabolism of cortisol to cortisone. The quantitation of cortisol, DHEA and cortisone could therefore provide a more comprehensive assessment of the overall status of physiological stress. As DHEA and cortisone have yet to be quantified within the fish scale, our first objective was to ensure our sample processing protocol for cortisol was applicable to cortisone and DHEA. Following this, we induced a state of long-term stress in goldfish (Carassius auratus). Some degree of elevation in all hormones was observed in the stressed fish scales. Additionally, cortisol and cortisone were significantly elevated in the stressed fish serum in comparison to controls while DHEA was undetectable in either group. Overall, these results suggest that fish scales provide an appropriate medium for the assessment of long-term stress in fishes via the quantitation of relevant steroid hormones. Full article

Given the European eel population’s marked decrease since the 1980s, it has become urgent to collect information describing its regional population structure to improve management plans. The Minho River (NW-Portugal, SW-Europe) is an important basin for the eel at the southern limit of its distribution, but the species is poorly described. Thus, we aimed to study the structure of the European eel population in the Minho River using otolith shape analysis, which has proven to be effective in discriminating fish groups experiencing different environmental conditions through ontogeny. Our results showed complete discrimination between the two main types of habitats studied (tributaries and estuaries). Otoliths of eels from the estuary were rectangular and elliptic, whereas in the tributaries they presented a more round and circular form. Eels collected in both habitats were mostly yellow-stage eels with a similar age range, but the eels from the tributaries showed smaller length-at-age and lower body condition than those collected in the estuary. Additionally, the sex ratio was skewed towards males in the tributaries and females in the estuary. This study reveals that there are at least two distinct groups of eels in this basin, likely with different development characteristics. Full article

This perspective presents current and updated advances in research on nutrients and bioactive compounds in seafood. It is based on a literature quantitative research analysis approach. The main features of seafood components are introduced. This perspective aims at providing a current framework that relates nutrients, bioactive compounds, and seafood in a novel integrated and multidisciplinary manner, highlighting the current knowledge, the main research lines, and emerging strategies. The literature search was carried out by means of the Scopus database, and 22,542 documents were retrieved in the period from 1932 to 2024. Particularly, from the perspective of nutrition and health outputs, the main terms correlated with research on the relationship between seafood and nutritional and bioactive components, and the main existing research lines focused on this topic, were identified. The top recurring keywords were human/s, female, diet, nutrition, fish, male, adult, food intake. Full article

Every year, marine scientists around the world read thousands of otolith or scale images to determine the age structure of commercial fish stocks. This knowledge is important for fisheries and conservation management. However, the age-reading procedure is time-consuming and costly to perform due to the specialized expertise and labor needed to identify annual growth zones in otoliths. Effective automated systems are needed to increase throughput and reduce cost. DeepOtolith is an open-source artificial intelligence (AI) platform that addresses this issue by providing a web system with a simple interface that automatically estimates fish age by combining otolith images with convolutional neural networks (CNNs), a class of deep neural networks that has been a dominant method in computer vision tasks. Users can upload otolith image data for selective fish species, and the platform returns age estimates. The estimates of multiple images can be exported to conduct conclusions or further age-related research. DeepOtolith currently contains classifiers/regressors for three fish species; however, more species will be included as related work on ageing will be tested and published soon. Herein, the architecture and functionality of the platform are presented. Current limitations and future directions are also discussed. Overall, DeepOtolith should be considered as the first step towards building a community of marine ecologists, machine learning experts, and stakeholders that will collaborate to support the conservation of fishery resources. Full article

The present paper represents the first description of abnormal hermaphroditism in Galeus melastomus (Rafinesque, 1810). The black mouth cat shark specimen, collected in summer from southern Tyrrhenian Sea at the entrance of Salerno gulf, showed a basic intersexuality characterized by the presence of male secondary and female primary sexual characters. The reproductive system has been described with an accurate morphological analysis, also including a histological assessment of oocytes. Results showed the presence of only right clasper, not exceeding the pelvic fin in length, with the absence of internal males’ sexual organs. Concerning the female primary characters, the analysis of histological assessment showed the structure of mature oocyte, confirming the maturity stage of a mature female in active extruding stage, as highlighted by the macroscopic morphological analysis. Despite in many marine organisms’ hermaphroditism is a physiological condition showed by specimens during their lifecycle, in Elasmobranchs this is considered an abnormal condition, with some exceptions. The lack of information on hermaphroditism in elasmobranchs form the Mediterranean Sea requires an increase of scientific community’s attention, improving the knowledge on the reproductive biology of this sensitive taxon. This is essential to enhance the conservation of elasmobranchs populations in the entire Mediterranean basin. Full article

In this study, a microsatellite-based multiplex PCR panel for meagre (Argyrosomus regius) was developed as a useful and single tool in parental assignment and population studies. Twenty-one specific and interspecific microsatellites from different aquaculture species of meagre (Argyrosomus regius), Japanese meagre (A. japonicus), red drum (Sciaenops ocellatus) and yellow meagre (Acoupa weakfish) were assessed for genetic variability, allelic range and genotype reliability. Finally, a SuperMultiplex for Argyrosomus regius (SMAr) was designed with only the best eight microsatellite markers. The panel assessment was performed using a batch of brood stock from one company and a sample of 616 offspring. It was possible to assign 95% of the offspring to a single pair of parents using the exclusion method. It is therefore considered an easy procedure, and a powerful and low-cost tool for parental assignment to support companies’ breeding programs and to exchange information between research groups. Full article

As climate change and extreme weather intensify, forecasting natural environmental changes involves high uncertainty and variation. Planned policy changes and the ability of fisheries to withstand these changes and impacts are major challenges in regard to addressing future climate hazards in Taiwan. Taiwan’s geographic location is favourable for the marine fishery industry, which is an important primary industry and a source of animal protein for residents of Taiwan. Recently, both long-term climate change and extreme climate hazards have led to shocks in the marine fishery industry. The resulting instability of the industry directly affects the market supply of and demand for seafood. We conduct a case study of a marine fishery industry in Taiwan that incorporates social concern assessments of risk perception and judgements of risk acceptance through risk management processes. Furthermore, we incorporate stakeholder participatory processes to reduce the gap in awareness of adaptation and to increase the opportunity to reach consensus and develop an integrated risk management model that enables decision-makers to better meet the needs of society. These measures will enhance all parties’ willingness to adapt and help achieve the goal of public–private collaboration in facing climate change challenges. Full article

Fishery by-products (FBPs) have been increasingly investigated for the extraction and production of a vast array of active molecules. The aim of this study was to produce phenazine compounds from FBPs via microbial fermentation and assess their novel antinematode effect. Among various FBPs, squid pen powder (SPP) was discovered as the most suitable substrate for phenazine production by Pseudomonas aeruginosa TUN03 fermentation. Various small-scale experiments conducted in flasks for phenazine production indicated that the most suitable was the newly designed liquid medium which included 1% SPP, 0.05% MgSO₄, and 0.1% Ca₃(PO₄)₂ (initial pH 7). Phenazines were further studied for scale-up bioproduction in a 14 L bioreactor system resulting in a high yield (22.73 µg/mL) in a much shorter cultivation time (12 h). In the fermented culture broth, hemi-pyocyanin (HPC) was detected as a major phenazine compound with an area percentage of 11.28% in the crude sample. In the bioactivity tests, crude phenazines and HPC demonstrate novel potential nematicidal activity against black pepper nematodes, inhibiting both juveniles (J2) nematodes and egg hatching. The results of this work suggest a novel use of SPP for cost-effective bioproduction of HPC, a novel potential nematodes inhibitor. Moreover, the combination of MgSO₄ and Ca₃(PO₄)₂ was also found to be a novel salt composition that significantly enhanced phenazine yield by P. aeruginosa fermentation in this work. Full article

Neuropeptide Y (Npy) is an intricate neuropeptide regulating numerous physiological processes. It is a highly conserved peptide known to improve feed intake in many vertebrates, including fishes. To enlighten the mechanism of Npy in spotted scat feed intake control, we cloned and identified the Npy cDNA sequence. We further examined its expression in some tissues and explored its expression effects at different time frames (hours and days). Here, we discovered that spotted scat Npy comprised a 300 bp open reading frame (ORF) and a 99 amino acid sequence. Npy was identified to be expressed in all tissues examined. Using in situ hybridization examination, we proved that npy has a wide expression in the brain of the spotted scat. Furthermore, the expression of npy in the hypothalamus significantly increased one hour after feeding (p < 0.05). Further, it was revealed that npy expression significantly increased in fish that were fasted for up to 5 days and significantly increased after refeeding from the 8th to the 10th day. This suggests that Npy is an orexigenic peptide, and hence, it increases food intake and growth in the spotted scat. Additionally, results from in vitro and in vivo experiments revealed that Npy locally interacts with other appetite-regulating peptides in the spotted scat hypothalamus. This research aimed to set a fundamental study in developing the feed intake regulation, improving growth and reproduction, which is significant to the aquaculture industry of the spotted scat. Full article

Milkfish, Chanos chanos, is one of the major inland cultured fish species in Taiwan. Variations in land resources and climate have led to the application of two distinct culture practices of milkfish polycultures with white shrimp, Penaeus indicus. This study applies a translog cost function model to analyze the production scale economy and input demand price elasticity of four milkfish polyculture systems with two different culture periods (OWC and NOWC) and two different white shrimp–milkfish fry stocking ratios (low SMR: 10–55 fry/ha; high SMR: 56–100 fry/ha). The findings show that the four milkfish polyculture systems require different operational adjustments to increase production while reducing the average culture cost. More specifically, overwinter cultures (OWC) have economies of scale. Farmers may reduce the average cost by expanding the production scale. Non-overwinter polycultures (NOWC) with high SMR are at the stage of decreasing return to scale, meaning that gains in output of milkfish cannot reduce the average cost. In terms of input factor use, farmers of OWC systems with high SMR are sensitive to fluctuations in the fry price since fry constitutes the input factor exhibiting the highest own-price elasticity. Moreover, fry and feed of OWC households with high SMR have high levels of substitutability, whereas fry and other input exhibit substitutability in OWC systems with low SMR. In NOWC farming households with high SMR, fry and capital have substitutability. It is thus recommended to modify the input factor use according to the culture mode and the white shrimp–milkfish stocking density ratio. Moreover, the study found that NOWCs have considerably higher SMR than OWCs, which may lead to a deterioration of the water quality in NOWC fishponds and lower survival rates. It is thus recommended to reduce the SMR to 31:1 to achieve economies of scale in production and increase the survival rate of milkfish and white shrimp. Full article

Brook trout populations in Prince Edward Island, Canada, have experienced over 50 pesticide-related fish kills since the 1960s. Life history evaluation of large sea-run brook trout recovered following two fish kill events was compared with a reference river using strontium:calcium otolith microchemistry. This study examined the dual hypotheses that anadromous brook trout are more likely to arise from sea-run mothers, and that freshwater entry timing makes them vulnerable to pesticide-induced fish kills. A total 89% of the fish exhibited an anadromous life history, and 77% of these were offspring of anadromous mothers, suggesting that anadromy is dominant in progeny of sea-run mothers. This study adds to our understanding of the maternal inheritance of anadromy in sea-run brook trout populations. Additionally, freshwater entry precedes the majority of fish kill events, illustrating that the overlap between migration and pesticide runoff contributes to the cumulative population risks to sea-run brook trout. Full article

The European sardine’s condition is reflected in its reproductive potential, and therefore, in its status as a fishery resource. These values depend on the stock’s distribution and resource availability, which is highly determined by environmental characteristics. Sardines from the productive Gulf of Trieste (in the North Adriatic), located in the northernmost section of the most septentrional Mediterranean sub-basin in which sardine exploitation has traditionally been intensive, were analysed. The reproductive cycle and gonadosomatic index (GSI) were studied. Tissue and mesenteric fat values, as well as vacuity (% V), relative condition (Kn), and hepatosomatic (HSI) indices were evaluated due to their potential relationships with reproductive performance. The results suggested opposite patterns between fat reserves and GSI, while Kn showed a relationship neither with GSI, nor with reproductive stage, which led us to conclude that it is more advisable to apply direct lipid indices to project their contribution to reproductive potential. Moreover, the females’ condition was generally better than that of the males, added to an advanced gonadal development during spring and summer, albeit males and females reached the spawning season together. Moreover, females’ GSIs were significantly higher during active spawning. Furthermore, correlation analyses showed that SST was related with the parameters evaluated, as well as the available portion of productivity for the fish (OPFish), which may explain the sardines’ better condition and GSIs than their chlorophyll concentration. Full article

The small-spotted catshark, Scyliorhinus canicula, provides an optimal model organism to include chondrichthyans in studies comparing morphology or physiology through vertebrate evolution. In particular, for investigations with ontogenetic aspects, there are only a limited number of alternative taxa. Therefore, a detailed staging system is a prerequisite to allowing comparison between different studies. This study supplements information on the latest stages of the established system by Ballard and colleagues in 1993 and complements the respective staging system by including the latest pre-hatching stages. During this phase, some significant ontogenetic shifts happen, e.g., reduction of external gill filament length and complete flattening of rostral angle until Size Class 6, change in the ratio of pre- to post-vent length, and establishment of body pigmentation in Size Classes 7 and 8. All these shifts finally transform the embryo into a hatchling prepared for living outside the eggshell. This study provides a framework allowing comparison of investigations on pre-hatchings of the small-spotted catshark. Full article

Teleost otoliths provide a pivotal medium for studying changes in population structure and population dynamics of fish. Understanding the otolith-fish size relationship and intraspecies variation in otolith morphology is essential for the accurate assessment and management of fishery resources. In our study, we aimed to estimate the relationships between otolith morphological measurements and fish length, and detect differences in the otolith morphology of planktivorous and benthivorous morphs of Schizopygopsis thermalis in Lake Amdo Tsonak Co on the Qinghai-Tibet Plateau (QTP). Both morphs exhibited strong linear otolith-fish size relationships; otolith morphology was sexually dimorphic in each morph; the morphs differed significantly in otolith shape and size (e.g., posterior side, the region between the posterior and ventral otolith, otolith length, circularity, and surface density). In addition, we found that the differences in otolith morphology between morphs are related to habitat preferences, diet, and growth. Basic data on the biology of S. thermalis are essential for poorly studied Lake Amdo Tsonak Co, and our study emphasizes that intraspecific variation in otolith morphology should be taken into consideration when differentiating stocks, populations, and age classes based on otolith morphology. Full article

The Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis, YFP) is a critically endangered small odontocete species, mainly distributed in the middle and lower reaches of the Yangtze River, Poyang Lake, and Dongting Lake. Under the influence of human activities, many factors are threatening the survival and reproduction of YFPs in their natural habitat. Ex situ conservation is of great significance to strengthen the rescuing conservation of YFPs by providing suitable alternative habitats and promoting the reproduction and growth of the ex situ population. To reveal the differences in gene expression of YFPs in natural and ex situ protected waters, and to investigate the effects of environmental factors on YFPs and their mechanisms, we performed transcriptome sequencing for blood tissues of YFPs collected from natural waters and ex situ protected waters. Using RNA-seq we identified 4613 differentially expressed genes (DEGs), of which 4485 were up-regulated and 128 were down-regulated in the natural population. GO analysis showed that DEGs were significantly enriched in entries related to binding, catalytic activity, and biological regulation; KEGG analysis showed that DEGs were enriched mainly in signal transduction, endocrine system, immune system, and sensory system-related pathways. Further analysis revealed that water pollution in natural waters may affect the hormone secretion of YFPs by altering the expression pattern of endocrine genes, thus interfering with normal endocrine activities; noise pollution may induce oxidative stress and inflammatory responses in YFPs, thus impairing the auditory function of YFPs. This study provides a new perspective for further research on the effect of habitat conditions on the YFPs and suggests that improving the habitat environment may help in the conservation of YFPs. Full article

To study the effects of Bacillus subtilis supplementation in a high-fat diet on the gut microbiota and nonalcoholic fatty liver disease in grass carp (Ctenopharyngodon idella), juveniles (60 ± 5 g) were fed three diets: (a) a control diet (CON), (b) a high-fat diet (HFD) and (c) a high-fat diet supplemented with B. subtilis (HFD + BS). After 8 weeks of feeding, fish growth, serum biochemical indices and total liver lipid content were measured, and gut microbiota analysis was performed using the MiSeq250 high-throughput sequencing platform. The results of this study showed that B. subtilis could improve growth and blood serum indices and reduce lipid deposition in the fish liver, preventing fatty liver disease. A grass carp model of fatty liver induced by a high-fat diet was successfully established. Moreover, B. subtilis altered the intestinal microbiota of HFD-fed grass carp, making it more similar to that of the control group. This study revealed the important effects of B. subtilis on grass carp with fatty liver induced by a high-fat diet and provides the foundation for the application of probiotics in grass carp farming. Full article

To identify key nonspecific organisational characteristics of the mid-trophic pelagic communities, which remain a challenge, we work with sound scattering layers (SSLs). Application was tested in the three African Atlantic Large Marine Ecosystems (AALMEs) to assess the utility of adapting and developing new acoustic variables. Our methodology allowed comparison between Large Marine Ecosystems (LMEs) based on 14 morphological, spatial and acoustic variables to characterize SSLs over time. These original variables were effective in monitoring and comparing the LMEs, and even allowed us to discriminate different organisations inside the Canary Current LME. Common traits identified for all AALMEs included the importance of the shallowest SSL. However, we identified an unexpected night-time pattern in SSL distributions in the Benguela Current LME which reflect a major difference in diel vertical migration mechanisms relative to other AALMEs. We also highlighted the predominance of elementary sampling unit (ESUs) with a single SSL and an unoccupied tiny layer close to the bottom, even if some ESUs presented up to six SSLs. Inter-annual changes in SSL organisation are highlighted by adaptation of original variables as the proportion of the water column occupied by SSLs and the relative importance of the shallowest SSL. SSL variables have been used mostly in deep water; here, we applied them on the continental shelf. SSL variables can be used to standardize the monitoring of marine ecosystems and capture change in spatial structure and function of mid-trophic pelagic marine ecosystems worldwide, even in data-poor areas where species identification of lower-trophic pelagic organism remains a challenge. Full article

Otolith morphological variability is used as a reliable indicator to discriminate fish that experience different environmental conditions during their lifetimes. The present study examined the effects of developmental temperature (DT) during the egg and yolk-sac larval period on the otolith shape and asymmetry of Gilthead seabream in the later metamorphosis (56–58 days post-hatching, dph) and the early juvenile stage (93–95 dph). The experimental populations were reared at different water temperatures (17, 20, or 23 °C DT) from epiboly onset to the end of the yolk-sac larval stage (5–7 days post-fertilization, dpf) and then at a common rearing temperature (20 °C), up to the end of the trials (93–95 dph). Otolith shape and bilateral asymmetry were analyzed at metamorphosis (20–21 mm standard length, SL) and the early juvenile stage (31–32 mm SL). The results of elliptic Fourier analysis showed that DT significantly affected the otolith shape at both stages examined. Furthermore, elevated DT significantly increased the asymmetry levels of seabream otoliths in the early juvenile stage. The results are discussed in terms of the thermally induced long-term changes of seabream otolith morphology and the potential effects of the raised otolith asymmetry on wild seabream juveniles. Full article

The age determination of fish is fundamental to marine resource management. This task is commonly done by analysis of otoliths performed manually by human experts. Otolith images from Greenland halibut acquired by the Institute of Marine Research (Norway) were recently used to train a convolutional neural network (CNN) for automatically predicting fish age, opening the way for requiring less human effort and availability of expertise by means of deep learning (DL). In this study, we demonstrate that applying a CNN model trained on images from one lab (in Norway) does not lead to a suitable performance when predicting fish ages from otolith images from another lab (in Iceland) for the same species. This is due to a problem known as dataset shift, where the source data, i.e., the dataset the model was trained on have different characteristics from the dataset at test stage, here denoted as target data. We further demonstrate that we can handle this problem by using domain adaptation, such that an existing model trained in the source domain is adapted to perform well in the target domain, without requiring extra annotation effort. We investigate four different approaches: (i) simple adaptation via image standardization, (ii) adversarial generative adaptation, (iii) adversarial discriminative adaptation and (iv) self-supervised adaptation. The results show that the performance varies substantially between the methods, with adversarial discriminative and self-supervised adaptations being the best approaches. Without using a domain adaptation approach, the root mean squared error (RMSE) and coefficient of variation (CV) on the Icelandic dataset are as high as 5.12 years and 28.6%, respectively, whereas by using the self-supervised domain adaptation, the RMSE and CV are reduced to 1.94 years and 11.1%. We conclude that careful consideration must be given before DL-based predictors are applied to perform large scale inference. Despite that, domain adaptation is a promising solution for handling problems of dataset shift across image labs. Full article

This study investigated, for the first time, the integrated effects of dietary protein source and protein/carbohydrate (P/CH) ratio on gilthead seabream gut histomorphology, microbiota composition, digestive enzymes activity, and immunological and oxidative stress-related gene expressions. Four isolipidic diets: two fishmeal-based (FM) and two plant feedstuff (PF)-based diets, with P/CH ratios of 50/10 or 40/20 each (FM-P50/CH10; FM-P40/CH20; PF-P50/CH10; PF-P40/CH20), were tested. PF-based diets lead to more histomorphological alterations than FM-based diets. P/CH ratio had no relevant effect on gut histomorphology. Gut mucosa of fish fed PF-based diets presented a higher number of operational taxonomic units, and richness and diversity indices, while the P/CH ratio did not affect those parameters. The α-amylase activity was lower in fish fed with PF-based diets and in fish fed the P40/CH20 diets. Regarding the immune-related genes, only cyclooxygenase-2 was affected, being higher in fish fed the P50/CH10 diets than the P40/CH20 diets. Fish fed the FM-based diets presented higher expression of glutathione reductase and glutathione peroxidase, while fish fed the P50/CH10 diet had higher expression of superoxide dismutase. In conclusion, PF-based diets can compromise gut absorptive and digestive metabolism, but decreasing the dietary P/CH ratio had little effect on the parameters measured. Full article

In recent years, much attention has been focused on the impact of climate change, particularly via ocean acidification (OA), on marine organisms. Studying the impact of OA on long-living organisms, such as sharks, is especially challenging. When the ocean waters absorb anthropogenic carbon dioxide (CO₂), slow-growing shark species with long generation times may be subjected to stress, leading to a decrease in functionality. Our goal was to examine the behavioral and physiological responses of sharks to OA and the possible impacts on their fitness and resilience. We conducted a systematic review in line with PRISMA-Analyses, of previously reported scientific experiments. We found that most studies used CO₂ partial pressures (pCO₂) that reflect representative concentration pathways for the year 2100 (e.g., pH ~7.8, pCO₂ ~1000 μatm). Since there is a considerable knowledge gap on the effect of OA on sharks, we utilized existing data on bony fish to synthesize the available knowledge. Given the similarities between the behaviors and physiology of these two superclasses’ to changes in CO₂ and pH levels, there is merit in including the available information on bony fish as well. Several studies indicated a decrease in shark fitness in relation to increased OA and CO₂ levels. However, the decrease was species-specific and influenced by the intensity of the change in atmospheric CO₂ concentration and other anthropogenic and environmental factors (e.g., fishing, temperature). Most studies involved only limited exposure to future environmental conditions and were conducted on benthic shark species studied in the laboratory rather than on apex predator species. While knowledge gaps exist, and more research is required, we conclude that anthropogenic factors are likely contributing to shark species’ vulnerability worldwide. However, the impact of OA on the long-term stability of shark populations is not unequivocal. Full article

Germplasm repositories can benefit sustainable aquaculture by supporting genetic improvement, assisted reproduction, and management of valuable genetic resources. Lack of reliable quality management tools has impeded repository development in the past several decades. Microfabricated open-hardware devices have emerged as a new approach to assist repository development by providing standardized quality assessment capabilities to enable routine quality control. However, prototyping of microfabricated devices (microdevices) traditionally relies on photolithography techniques that are costly, time intensive, and accessible only through specialized engineering laboratories. Although resin 3-D printing has been introduced into the microfabrication domain, existing publications focus on customized or high-cost (>thousands of USD) printers. The goal of this report was to identify and call attention to the emerging opportunities to support innovation in microfabrication by use of low-cost (<USD 350) resin 3-D printing for rapid prototyping. We demonstrate that low-cost mask-based stereolithography (MSLA) 3-D printers with straightforward modifications can provide fabrication quality that approaches traditional photolithography techniques. For example, reliable feature sizes of 20 µm with dimensional discrepancy of <4% for lateral dimensions and <5% for vertical dimensions were fabricated with a consumer-level MSLA printers. In addition, alterations made to pre-processing, post-processing, and printer configuration steps improved print quality as demonstrated in objects with sharper edges and smoother surfaces. The prototyping time and cost of resin 3-D printing (3 h with USD 0.5/prototype) were considerably lower than those of traditional photolithography (5 d with USD 80/prototype). With the rapid advance of consumer-grade printers, resin 3-D printing can revolutionize rapid prototyping approaches for microdevices in the near future, facilitating participation in interdisciplinary development of innovative hardware to support germplasm repository development for aquatic species. Full article

Exosomes are important mediators of intercellular communication and modulate many physiological and pathological processes. Knowledge of secretion, content, and biological functions of fish exosomes during pathological infection is still scarce due to lack of suitable standardized isolation techniques. In this study, we aimed to isolate exosomes from the plasma of marine fish, rock bream (Oplegnathus fasciatus), by two isolation methods: differential ultracentrifugation (UC) and a commercial membrane affinity spin column technique (kit). Morphological and physicochemical characteristics of the isolated exosomes were determined by these two methods, and the efficiencies of the two methods were compared. Exosomes isolated by both methods were in the expected size range (30–200 nm) and had a characteristic cup-shape in transmission electron microscopy observation. Moreover, more intact exosomes were identified using the kit-based method than UC. Nanoparticle tracking analysis demonstrated a heterogeneous population of exosomes with a mean particle diameter of 114.6 ± 4.6 and 111.2 ± 2.2 nm by UC and a kit-based method, respectively. The particle concentration obtained by the kit method (1.05 × 10¹¹ ± 1.23 × 10¹⁰ particles/mL) was 10-fold higher than that obtained by UC (4.90 × 10¹⁰ ± 2.91 × 10⁹ particles/mL). The kit method had a comparatively higher total protein yield (1.86 mg) and exosome protein recovery (0.55 mg/mL plasma). Immunoblotting analysis showed the presence of exosome marker proteins (CD81, CD63, and HSP90) in the exosomes isolated by both methods and suggests the existence of exosomes. However, the absence of cytotoxicity or adverse immune responses to fish and mammalian cells by the exosomes isolated by the UC procedure indicates its suitability for functional studies in vitro. Overall, our basic characterization results indicate that the kit-based method is more suitable for isolating high-purity exosomes from fish plasma, whereas UC has higher safety in terms of yielding exosomes with low toxicity. This study provides evidence for the existence of typical exosomes in rock beam plasma and facilitates the selection of an efficient exosome isolation procedure for future applications in disease diagnosis and exosome therapy as fish medicine. Full article

Direct and indirect measures of individual movement provide valuable knowledge regarding a species’ resiliency to environmental change. Information on patterns of movement can inform species management and conservation but is lacking for many imperiled fishes. The Candy Darter, Etheostoma osburni, is an endangered stream fish with a dramatically reduced distribution in Virginia in the eastern United States, now known from only four isolated populations. We used visual implant elastomer tags and microsatellite DNA markers to directly describe movement patterns in two populations. Parentage analysis based on parent-offspring pairs was used to infer movement patterns of young-of-year and age-1 individuals, as well as the reproductive contribution of certain adults. Direct measurements of movement distances were generally similar between methods, but microsatellite markers revealed greater distances moved, commensurate with greater spatial frames sampled. Parent-offspring pairs were found throughout the species’ 18.8-km distribution in Stony Creek, while most parent-offspring pairs were in 2 km of the 4.25-km distribution in Laurel Creek. Sibship reconstruction allowed us to characterize the mating system and number of spawning years for adults. Our results provide the first measures of movement patterns of Candy Darter as well as the spatial distribution of parent-offspring pairs, which may be useful for selecting collection sites in source populations to be used for translocation or reintroductions. Our results highlight the importance of documenting species movement patterns and spatial distributions of related individuals as steps toward understanding population dynamics and informing translocation strategies. We also demonstrate that the reproductive longevity of this species is greater than previously described, which may be the case for other small stream fishes. Full article

Black bullheads Ameiurus melas are an environmentally tolerant omnivorous fish species that are found throughout much of North America and parts of Europe. Despite their prevalence, black bullheads are an infrequently studied species making their biology, ecology, and life history poorly understood. Although limited information has been published on black bullheads, evidence suggests that bullheads can dominate the fish biomass and have profound influences on the fish community in some north temperate USA lakes. The goal of our study was to provide additional information on black bullhead population demographics, growth rates, life history characteristics, and seasonal diet preferences in a northern Wisconsin lake. Using common fish collection gears (fyke netting, electrofishing), fish aging protocols, fecundity assessments, and diet indices, our results suggested that black bullheads exhibited relatively fast growth rates, early ages at maturity, moderate fecundity, and a diverse omnivorous diet. Due to these demographic and life history characteristics, black bullheads have the potential to dominate fish community biomass in their native and introduced range. Results from our study may inform the management of black bullhead as native and invasive species. Full article

This study evaluated a diverse range of markers of feeding stress to obtain a more precise assessment of the welfare of rainbow trout in relation to inadequate husbandry conditions. A feeding stress model based on dietary soybean meal was employed to identify suitable minimally invasive “classical” stress markers, together with molecular signatures. In a 56-day feeding experiment, rainbow trout were fed diets containing different levels of soybean meal. The impact of these different soybean meal diets on rainbow trout was assessed by water quality analyses, clinical health observations, classic growth and performance parameters, gut histopathology, blood-parameter measurements and multigene-expression profiling in RNA from whole blood. Soybean meal-induced enteritis was manifested phenotypically by an inflammatory reaction in the posterior section of the intestine and by diarrhoea in some trout. These inflammatory changes were associated with decreased supranuclear vacuolation. The haematocrit values and the levels of plasma cortisol and circulating lymphocytes in the blood were increased in trout that had consumed high amounts of SBM. Notably, the increased haematocrit depended significantly on the bodyweight of the individual trout. The transcript levels of certain genes (e.g., MAP3K1, LYG, NOD1, STAT1 and HSP90AB) emerged as potentially useful indicators in the blood of rainbow trout providing valuable information about inadequate nutrition. The expression-profiling findings provide a basis for improved, minimally invasive monitoring of feeding regimens in trout farming and may stimulate the development of practical detection devices for innovative aquaculture operations. Full article

The effect of silkworm-derived polysaccharide silkrose on fish ectoparasites was investigated. When juvenile yellowtail (Seriola quinqueradiata) fed diets containing silkrose were artificially infected with Benedenia seriolae, a fish ectoparasite, the numbers of parasitized B. seriolae were significantly lower compared to that in fish in the control group without silkrose treatment. Furthermore, when juvenile yellowtails were severely infected with B. seriolae, no mortality was observed in the silkrose-treated group, compared to more than 60% in the control group. In field studies carried out at a fish farm with yellowtail and white trevally (Pseudocaranx dentex), oral treatment with silkrose significantly reduced B. seriolae parasitism in yellowtail and Caligus longipedis and Neobenedenia girellae parasitism in white trevally. Silkrose treatment also reduced blood levels of cortisol, a stress hormone in both species. The changes in gene expression in the epidermis of yellowtail by silkrose treatment were also investigated, showing that the expression of various genes, including factors involved in immunity, stress response, and wound healing, was changed by the treatment. These findings indicate that silkworm-derived silkrose effectively prevents infection by external parasites in yellowtail and white trevally. Full article

A stock reduction analysis (SRA) of bigeye croaker Micropogonias megalops was performed based on commercial catch data. SRA solutions were restricted to a 2011 bigeye croaker stock biomass estimate of 14,412 t. The viable solution indicated a reduction in stock of 73.6% from 1983 to 2020 with an initial biomass of 22,186 t. In addition, a possible effect of hyperstability of the stock was evaluated by applying different versions of the Cobb–Douglas catch function. The most probable function based on a multi-model selection procedure was the one wherein the catch does not depend on biomass and is directly proportional to the applied fishing effort of small boats (~7 m) and vessels (~24 m). This situation suggests that in a free access regime, fishing can deplete the resource until it collapses, without observing a significant reduction in its catches until the event is very close. Full article

The authentication of high-quality fishery products originating from specific geographical regions is urgently needed worldwide. Chinese mitten crabs (Eriocheir sinensis), originating from Yangcheng Lake, are prime counterfeiting targets for the same reasons. Foreign crabs that are cultured briefly in the lake, known as “bathed” crabs, are illegally marketed as natives, negatively impacting the product quality. To establish a method for distinguishing “bathed” and genuine crabs, in this paper we conduct a comparative investigation by an Agilent 7500ce ICP-MS on multi-mineral element profiling of the third pereiopod from genuine and one month deliberately “bathing” cultured crabs. The profiles of 11 elements were significantly different between the genuine and foreign crabs before and after bathing. The discriminant analysis reached 100% accuracy to separate the genuine and “bathed” crabs into different groups. Bathing culture was unable to converge element profiles between the genuine and foreign crabs. The biogeochemical profiles can be effective for distinguishing “bathed” crabs. Full article

The possibility of improving the nutritional quality of plant byproducts (brewers’ spent grain and rice bran) through an enzyme treatment was tested in a formulated feed for grey mullet (Mugil cephalus). The enzyme treatment was carried out by Solid-State Hydrolysis (SSH) using a commercial preparation including carbohydrases and phytase. A feed prepared without the treatment and a commercial feed for carp were used as controls. In a preliminary short-term trial carried out at laboratory facilities, fish receiving the enzyme-treated feed showed significant improvement in both FCR and SGR when compared to those obtained with the untreated diet, although both experimental diets presented worse values than those obtained with the commercial feed. Different metabolic indicators including higher values of muscle glycogen and plasmatic triglycerides supported the positive effect of the enzyme treatment on the nutritional condition of the fish over those fed on the diet containing non-treated ingredients. Results of growth and feed efficiency that were obtained in a second long-term trial developed for 148 days under real production conditions evidenced the equivalence among the experimental and commercial diets and confirmed that enzyme pretreatment of plant ingredients by SSH may be a useful procedure to improve the nutritive value of high fiber plant byproducts when included in practical diets for this species and others with similar nutritional features. Full article

Biodiversity loss is a global problem, accelerated by human-induced pressures. In the marine realm, one of the major threats to species conservation, together with climate change, is overfishing. In this context, having information on the conservation status of target commercial marine fish species becomes crucial for assuring safe standards. We put together fisheries statistics from the FAO, the IUCN Red List, FishBase, and RAM Legacy databases to understand to what extent top commercial species’ conservation status has been assessed. Levels of assessment for top-fished species were higher than those for general commercial or highly commercial species, but almost half of the species have outdated assessments. We found no relation between IUCN Red List traits and FishBase Vulnerability Index, depreciating the latter value as a guidance for extinction threat. The RAM database suggests good management of more-threatened species in recent decades, but more data are required to assess whether the trend has reverted in recent years. Outdated IUCN Red List assessments can benefit from reputed stock assessments for new reassessments. The future of IUCN Red List evaluations for commercial fish species relies on integrating new parameters from fisheries sources and improved collaboration with fisheries stakeholders and managers. Full article

In Korea, red sea bream iridovirus (RSIV), especially subtype II, has been the main causative agent of red sea bream iridoviral disease since the 1990s. Herein, we report two Korean RSIV isolates with different subtypes based on the major capsid protein and adenosine triphosphatase genes: 17SbTy (RSIV mixed subtype I/II) from Japanese seabass (Lateolabrax japonicus) and 17RbGs (RSIV subtype II) from rock bream (Oplegnathus fasciatus). The complete genome sequences of 17SbTy and 17RbGs were 112,360 and 112,235 bp long, respectively (115 and 114 open reading frames [ORFs], respectively). Based on nucleotide sequence homology with sequences of representative RSIVs, 69 of 115 ORFs of 17SbTy were most closely related to subtype II (98.48–100% identity), and 46 were closely related to subtype I (98.77–100% identity). In comparison with RSIVs, 17SbTy and 17RbGs carried two insertion/deletion mutations (ORFs 014R and 102R on the basis of 17SbTy) in regions encoding functional proteins (a DNA-binding protein and a myristoylated membrane protein). Notably, survival rates differed significantly between 17SbTy-infected and 17RbGs-infected rock breams, indicating that the genomic characteristics and/or adaptations to their respective original hosts might influence pathogenicity. Thus, this study provides complete genome sequences and insights into the pathogenicity of two newly identified RSIV isolates classified as a mixed subtype I/II and subtype II. Full article

This study evaluates the genetic diversity of different meagre broodstocks sampled in Greece. A multiplex of twelve microsatellite markers was used to genotype 946 fish from eleven stocks and batches used for broodstock selection, and the genetic data was used to calculate genetic population parameters as well as to investigate the genetic differentiation between stocks. The results from a relatedness analysis were used as the guiding lines for a fine-tuned and overall evaluation of the genetic distance between stocks, and the choice of candidate breeders from some of them. The approach implemented in this study uses well-established population genetics methods to evaluate the selection of breeder candidates in aquaculture commercial conditions utilizing a descriptive genetic data set based on microsatellite analyses, and to outline an efficient methodology for establishing the basis of new breeding schemes. Full article

Probiotics for freshwater fish farming can be administered as single or multiple mixtures. The expected benefits of probiotics include disease prophylaxis, improved growth, and feed conversion parameters, such as the feed conversion rate (FCR) and specific growth rate (SGR). In the current work, we review the impact of probiotics on freshwater finfish aquaculture. Data were gathered from articles published during the last decade that examined the effects of probiotics on fish growth, FCR, and water quality in freshwater fishponds/tanks. While the expected benefits of probiotics are significant, the reviewed data indicate a range in the level of effects, with an average reduction in ammonia of 50.7%, SGR increase of 17.1%, and FCR decrease of 10.7%. Despite the variability in the reported benefits, probiotics appear to offer a practical solution for sustainable freshwater aquaculture. Disease prophylaxis with probiotics can reduce the need for antibiotics and maintain gut health and feed conversion. Considering that fish feed and waste are two significant parameters of the aquaculture ecological footprint, it can be argued that probiotics can contribute to reducing the environmental impact of aquaculture. In this direction, it would be beneficial if more researchers incorporated water quality parameters in future aquaculture research and protocols to minimize aquaculture’s environmental impact. Full article

The conventional methods of supplying feed to tilapia tanks are ineffective. It is better to find new a automatic feeder saving pellets from crushing and cohesion without hitting pellets during feeding at a predetermined interval of time and an accurate amount of food with a larger surface area covered by pellets. Developing-country fish farmers use manual feeding to be more cost-effective than with costly mechanized feeding, so this research aimed to design and construct an automatic fish feeder prototype to feed tilapia in a recirculation aquaculture system’s tank. The performance of the prototype was studied after it was designed and installed. The dispensed feed operated by a DC motor located underneath the pellet hopper and the feed material was discharged into the tank through a gate in the bottom of the feeder. Three pellet sizes, three rotation speeds, and three feeder heights from the water’s surface were used to test the automatic feeder’s efficiency. The results showed that the optimal speed for the automatic feeder was 14 rpm with a height of 70 cm, resulting in a distribution width of 26.6 cm and a high automatic feeder efficiency of 99.9%. Furthermore, the feeder used very little electricity and saved time, cost, labor, energy, and pellets. Full article

Parvalbumin is considered a major fish allergen. Here, we report the molecular evolution of the parvalbumin genes in bony fishes based on 19 whole genomes and 70 transcriptomes. We found unexpectedly high parvalbumin diversity in teleosts; three main gene types (pvalb-α, pvalb-β1, and pvalb-β2, including oncomodulins) originated at the onset of vertebrates. Teleosts have further multiplied the parvalbumin gene repertoire up to nine ancestral copies—two copies of pvalb-α, two copies of pvalb-β1, and five copies of pvalb-β2. This gene diversity is a result of teleost-specific whole-genome duplication. Two conserved parvalbumin genomic clusters carry pvalb-β1 and β2 copies, whereas pvalb-α genes are located separately in different linkage groups. Further, we investigated parvalbumin gene expression in 17 tissues of the common carp (Cyprinus carpio), a species with 21 parvalbumin genes in its genome. Two pvalb-α and eight pvalb-β2 copies are highly expressed in the muscle, while two alternative pvalb-α copies show expression in the brain and the testes, and pvalb-β1 is dominant in the retina and the kidney. The recent pairs of muscular pvalb-β2 genes show differential expression in this species. We provide robust genomic evidence of the complex evolution of the parvalbumin genes in fishes. Full article

Evidence of pain perception in fish is well established, but analgesic use in aquaculture is limited. The objective was to investigate the comparative pharmacokinetics of flunixin administered intramuscularly (IM) and meloxicam administered IM or orally (PO) in tilapia. Two hundred and seventy fish were assigned to 1 of 3 treatment groups: flunixin meglumine IM (2.2 mg/kg); meloxicam IM (1 mg/kg); or meloxicam PO (1 mg/kg). Blood and tissue samples were collected from 6 fish per treatment at 14 time points for 10 days. Drug concentrations were determined using ultra-high-pressure liquid chromatography coupled with mass spectroscopy. Plasma concentration versus time data were analyzed with a non-compartmental approach using a commercially available software. Flunixin reached a mean maximum concentration (C_max) of 4826.7 ng/mL at 0.5 h, had a terminal half-life (T¹/₂) of 7.34 h, and an area under the concentration–time curve extrapolated to infinity (AUC_{INF_obs}) of 25,261.62 h·ng/mL. Meloxicam IM had a T¹/₂ of 9.4 h after reaching a C_max of 11.3 ng/mL at 2 h, with an AUC_{INF_obs} of 150.31 h·ng/mL. Meloxicam PO had a T¹/₂ of 1.9 h after reaching a C_max of 72.2 ng/mL at 2 h, with an AUC_{INF_obs} of 400.83 h·ng/mL. Tissue concentrations of both drugs were undetectable by 9 h. Flunixin reached a sufficient plasma concentration to potentially have an analgesic effect, while meloxicam, when administered at the given dosage, likely would not. Full article

Evaluating the survival of discarded species is gaining momentum after the new European Common Fisheries Policy (Article 15 of the European Regulation No. 1380/2013). This regulation introduced a discard ban, with an exemption for those species with demonstrated high survival rates after their capture and release. Candidate species should be evaluated for each fishing gear and geographical area. In this study, we assessed not only survival, but also physiological recovery rates of blackspot seabream (Pagellus bogaraveo) below commercial size captured with a hookline called “voracera” in the Strait of Gibraltar (SW Atlantic waters of Europe). Experiments onboard a commercial fishing vessel were paralleled with studies in controlled ground-based facilities, where the capture process was mimicked, and physiological recovery markers were described. Our results confirmed that hookline capture induced acute stress responses in the target species, such as changes in plasma cortisol, lactate, glucose, and osmolality. However, 90.6% of the blackspot seabreams below commercial size captured with this fishing gear managed to survive, and evidenced physiological recovery responses 5 h after capture, with complete homeostatic recovery occurring within the first 24 h. Based on this study, the European Commission approved an exemption from the discard (EU Commission Delegated Regulation 6794/2018). Thus, the robust methodology described herein can be an important tool to mitigate the problem of discards in Europe. Full article