Diversity

21 pages, 1795 KB

Open AccessEditor’s ChoiceArticle

Geographical Variation in the Sand Cat, Felis margarita (Carnivora: Felidae)

by Andrew C. Kitchener, Alexei V. Abramov, Géraldine Veron, Lisa Banfield, Helen Senn, Nobuyuki Yamaguchi and Andrey Yu. Puzachenko

Diversity 2024, 16(10), 635; https://doi.org/10.3390/d16100635 - 11 Oct 2024

Cited by 2 | Viewed by 7791

Abstract

Sand cats, Felis margarita, range from northern Africa and the Arabian Peninsula to Central Asia. Their apparently discontinuous distribution is recognized as comprising four subspecies. Recent genetic research found little differentiation between subspecies except for the North African form. In this study, [...] Read more.

Sand cats, Felis margarita, range from northern Africa and the Arabian Peninsula to Central Asia. Their apparently discontinuous distribution is recognized as comprising four subspecies. Recent genetic research found little differentiation between subspecies except for the North African form. In this study, 90 skins and 88 skulls were analyzed from the four subspecies. A discriminant function analysis of the scores, ranging from 1 to 4, of four pelage characteristics revealed differentiation between putative subspecies, except between Turkmenian and Pakistani sand cats. Northern African and Arabian sand cats tend to be spotted and striped, while Turkmenian and Pakistani sand cats are less spotted and have a dorsal crest of fur. Nonmetric multidimensional scaling (NMDS) models generated from 21 skull measurements revealed an overlap in morphospace between all subspecies, except for larger Turkmenian sand cats; northern African sand cats were smallest. Therefore, both pelage characteristics and skull morphometrics support up to three subspecies. However, considering recent genetic research, it is likely that two subspecies should be recognized, F. m. margarita from northern Africa and F. m. thinobia from the Arabian Peninsula, and Southwest and Central Asia. Widening of the dataset and nuclear DNA evidence are required to increase our understanding of geographical variation in this little studied species. Full article

(This article belongs to the Special Issue Ecology and Evolution of Mammals)

► Show Figures

Figure 1

21 pages, 29272 KB

Open AccessEditor’s ChoiceArticle

Terrestrial Aerophytic Cyanobacteria in the Canary Island Laurel-Forest (Laurisilva): Discovery of Brasilonema novocanariensis sp. nov. and Rhizonema melkonianarum sp. nov. from the Laurus Phyllosphere

by Nereida M. Rancel-Rodríguez, Christophe Vieira and Marta Sansón

Diversity 2024, 16(10), 625; https://doi.org/10.3390/d16100625 - 10 Oct 2024

Cited by 4 | Viewed by 2436

Abstract

Cyanobacteria, known for their remarkable adaptability, are a diverse group of oxygenic photoautotrophic organisms found in various habitats worldwide. While their presence in aquatic ecosystems has been extensively studied, research on terrestrial and aerophytic cyanobacteria remains relatively limited, particularly concerning their taxonomic diversity [...] Read more.

Cyanobacteria, known for their remarkable adaptability, are a diverse group of oxygenic photoautotrophic organisms found in various habitats worldwide. While their presence in aquatic ecosystems has been extensively studied, research on terrestrial and aerophytic cyanobacteria remains relatively limited, particularly concerning their taxonomic diversity and molecular characteristics. In this study, utilizing morphological and molecular data derived from the 16S rRNA gene, we unveiled and described two new species of filamentous cyanobacteria growing epiphytically on Laurus novocanariensis in the laurel forest (laurisilva) of the Canary Islands. The first species, Brasilonema novocanariensis sp. nov., belongs to a genus of aerophytic and subaerophytic nostocalean cyanobacteria. The second, Rhizonema melkonianarum sp. nov., belongs to the genus Rhizonema. The discovery of a new species of Brasilonema from the Canary Islands related to species initially found on the opposite side of the Atlantic Ocean, and recently in Asia, Europe, and Portugal, raises questions about their dispersal mechanisms, whether through natural means or human-mediated processes, prompting the need for future studies to investigate these propagation patterns. In the case of Rhizonema melkonianarum sp. nov., the transition from adapting to a basidiolichen host to inhabiting the phyllosphere of angiosperms raises ecological and evolutionary adaptation questions regarding cyanobacterial adaptability and their ecological roles in diverse habitats. This research expands our understanding of the diversity and geographic distribution of these terrestrial phyllosphere-associated cyanobacteria. Full article

(This article belongs to the Section Biodiversity Conservation)

► Show Figures

Graphical abstract

73 pages, 77432 KB

Open AccessEditor’s ChoiceReview

The Portofino Promontory: 200 Years of History of Marine Biology

by Giorgio Bavestrello, Federico Betti, Carlo Nike Bianchi, Valentina Cappanera, Mariachiara Chiantore, Nicola Corradi, Monica Montefalcone, Mauro Giorgio Mariotti, Carla Morri, Paolo Povero, Giulio Relini, Stefano Schiaparelli and Marzia Bo

Diversity 2024, 16(10), 629; https://doi.org/10.3390/d16100629 - 10 Oct 2024

Cited by 5 | Viewed by 10892

Abstract

This paper outlines the history of scientific research developed in the Portofino Promontory, located in the centre of the Ligurian Sea. The chronicles span over two centuries, from the late 18th century to the present day. Portofino is now recognised as one of [...] Read more.

This paper outlines the history of scientific research developed in the Portofino Promontory, located in the centre of the Ligurian Sea. The chronicles span over two centuries, from the late 18th century to the present day. Portofino is now recognised as one of the best-known areas in the world regarding marine biological communities and their temporal dynamics, particularly in relation to current climate changes. In addition, since 1999, with the establishment of the Marine Protected Area, significant research related to marine environment conservation has developed in Portofino. The role of the University of Genoa, the Natural History Museum, other important institutions, and the researchers involved in the Portofino area has been outlined. Full article

(This article belongs to the Section Marine Diversity)

► Show Figures

Figure 1

31 pages, 5654 KB

Open AccessEditor’s ChoiceArticle

The Radiation of Landhoppers (Crustacea, Amphipoda) in New Zealand

by Olivier J.-P. Ball, Alan A. Myers, Stephen R. Pohe and Lara D. Shepherd

Diversity 2024, 16(10), 632; https://doi.org/10.3390/d16100632 - 10 Oct 2024

Cited by 6 | Viewed by 4671

Abstract

A synopsis of current knowledge of the diversity of the New Zealand landhopper fauna is provided. A combination of morphological and molecular analysis was employed on material from across New Zealand. Thirteen new endemic genera soon to be formally described have been discovered, [...] Read more.

A synopsis of current knowledge of the diversity of the New Zealand landhopper fauna is provided. A combination of morphological and molecular analysis was employed on material from across New Zealand. Thirteen new endemic genera soon to be formally described have been discovered, including four belonging to the widespread families Talitridae and Arcitalitridae. These are families that had not been previously reported from New Zealand. We document the existence of at least 48 new provisional native species. This number far exceeds the 28 species currently described. Some described species are now shown to be species complexes, and a few of these are very diverse with numerous cryptic species. Six changes to the existing taxonomy are proposed. Dallwitzia simularis (Hurley, 1957) is transferred from Makawidae Myers & Lowry, 2020 to Talitridae Rafinesque, 1815; Kellyduncania hauturu (Duncan, 1994) is reinstated as a member of Dana Lowry, 2011; Kellyduncania (Lowry & Myers, 2019) is relegated to a synonym of Dana Lowry, 2011; Kanikania Duncan, 1994 is transferred from Makawidae Myers & Lowry, 2020 to Arcitalitridae Myers & Lowry, 2020; Parorchestia longicornis is transferred to Kanikania Duncan, 1994; Waematau kaitaia (Duncan, 1994) is transferred to Kohuroa Lowry, Myers & Nakano, 2019; and Waematau unuwhao (Duncan, 1994) is transferred to Omaiorchestia Lowry & Myers, 2019. This reduces the number of described New Zealand genera from 17 to 16. Full article

(This article belongs to the Special Issue Diversity and Evolution within the Amphipoda)

► Show Figures

Figure 1

25 pages, 2521 KB

Open AccessEditor’s ChoiceArticle

A Comparative Analysis of Island vs. Mainland Arthropod Communities in Coastal Grasslands Belonging to Two Distinct Regions: São Miguel Island (Azores) and Mainland Portugal

by Hugo Renato M. G. Calado, Paulo A. V. Borges, Ruben Heleno and António O. Soares

Diversity 2024, 16(10), 624; https://doi.org/10.3390/d16100624 - 9 Oct 2024

Cited by 5 | Viewed by 3648

Abstract

Coastal grasslands host diverse arthropod communities and provide important ecosystem services. Islands, being isolated environments, are expected to have simpler ecosystems than continental areas, with the few successful colonizing species often attaining high densities; however, these patterns are still poorly documented for coastal [...] Read more.

Coastal grasslands host diverse arthropod communities and provide important ecosystem services. Islands, being isolated environments, are expected to have simpler ecosystems than continental areas, with the few successful colonizing species often attaining high densities; however, these patterns are still poorly documented for coastal grassland arthropods. We conducted a comparative study of the biodiversity of arthropod communities in two distinct coastal grassland ecosystems (Portugal mainland and the Azores) with the following objectives: (a) to investigate the arthropod community composition in both locations; (b) to compare the diversity profiles in both locations; (c) to investigate potential density compensation in the island’s arthropod communities. For four months, arthropods were collected on the Island of São Miguel, Setúbal Peninsula, and Sine’s region and subsequently classified into taxonomic groups. With the data collected, Hill Numbers were calculated for each region. We confirmed that the richness on the mainland was higher than in the Azores, and we found some apparent abundance compensation in the Azores. At the same time, we also observed that many species in the Azores are also present in the continental coastal grasslands of mainland Portugal. Full article

► Show Figures

Figure 1

18 pages, 2191 KB

Open AccessEditor’s ChoiceArticle

Meta-Analysis Reveals Behavioral Plasticity, Not Agonistic Behavior, Facilitates Invasion of Brown Anoles (Anolis sagrei) and Replacement of Green Anoles (Anolis carolinensis)

by Maya A. Jackson and Sonny S. Bleicher

Diversity 2024, 16(10), 620; https://doi.org/10.3390/d16100620 - 8 Oct 2024

Cited by 2 | Viewed by 5432

Abstract

In a meta-analysis, we examined the behavioral portfolio of invasive brown anoles (Anolis sagrei) and native green anoles (Anolis carolinensis) in urban and non-urban environments. We hypothesized that invasive anoles would display more agonistic and bold signals (head bobbing, [...] Read more.

In a meta-analysis, we examined the behavioral portfolio of invasive brown anoles (Anolis sagrei) and native green anoles (Anolis carolinensis) in urban and non-urban environments. We hypothesized that invasive anoles would display more agonistic and bold signals (head bobbing, dewlap extensions, and pushups) than their native-range counterparts and their native competitors. We found that in urban settings, anoles of both species signaled more with dewlap extensions than with head bobs. Brown anoles displayed significantly more in non-urban habitats and their native range compared to urban habitats and invasive ranges. The outcome of our analysis suggests that brown anoles have plastic behavioral portfolios, whereas green anoles have relatively balanced preferences for head bobbing, irrespective of the habitat in which the populations were collected. We attribute the success of the brown anole invasion to the flexible strategy in the face of higher mate competition, higher predation risks, and less resource competition in both urban and invasive ranges. Lastly, we observed publication biases. More studies were conducted with urban and invasive brown anoles and specifically in manipulative mesocosm experimental settings—transplanting populations from native field settings. We show this altered the display rates across all studied signals. Full article

(This article belongs to the Special Issue Ectotherms in a Dynamic Environment: Understanding Patterns of Ecology, Distribution, Evolution, and Threats to Species)

► Show Figures

Figure 1

21 pages, 3480 KB

Open AccessEditor’s ChoiceReview

Patterns of Zoological Diversity in Iran—A Review

by Sajad Noori, Reza Zahiri, Gholam Hosein Yusefi, Mahdi Rajabizadeh, Oliver Hawlitschek, Ehsan Rakhshani, Martin Husemann and Hossein Rajaei

Diversity 2024, 16(10), 621; https://doi.org/10.3390/d16100621 - 8 Oct 2024

Cited by 20 | Viewed by 8499

Abstract

Iran is a country characterized by high biodiversity and complex biogeographic patterns. Its diverse landscape and steep climatic gradients have resulted in significant faunal diversity and high level of endemism. To better understand these patterns, we investigated the historical environmental drivers that have [...] Read more.

Iran is a country characterized by high biodiversity and complex biogeographic patterns. Its diverse landscape and steep climatic gradients have resulted in significant faunal diversity and high level of endemism. To better understand these patterns, we investigated the historical environmental drivers that have shaped Iran’s current geological and climatological conditions, and, consequently, have shaped the current zoological distribution patterns. Furthermore, we provide an overview of the country’s zoological diversity and zoogeography by reviewing published studies on its fauna. We analyzed nearly all available catalogs, updated checklists, and relevant publications, and synthesized them to present a comprehensive overview of Iran’s biodiversity. Our review reports approximately 37,500 animal species for Iran. We also demonstrated that the country serves as a biogeographic transition zone among three zoogeographical realms: the Palearctic, Oriental, and Saharo-Arabian, where distinct faunal elements intersect. This biogeographic complexity has made it challenging to delineate clear zoogeographical zones, leading to varying classifications depending on the taxon. The uplift of mountain ranges, in particular, has played a crucial role in shaping faunal diversity by serving as barriers, corridors, and glacial refugia. These mountains are largely the result of orogeny and plate collisions during the Mesozoic and Cenozoic eras, coupled with the development of the Tethyan Sea and the uplift of several ranges during the Miocene. Despite these insights, our understanding of biodiversity distribution in Iran remains incomplete, even for some well-studied taxa, such as certain vertebrate families and arthropods. We highlight the existing gaps in knowledge regarding zoogeographical patterns and propose approaches to address these gaps, particularly concerning less-studied species and the highly diverse group of insects. Full article

(This article belongs to the Section Animal Diversity)

► Show Figures

Figure 1

29 pages, 19422 KB

Open AccessEditor’s ChoiceArticle

Palaeoenvironmental Analysis of the Southern Part of the Danube–Tisza Interfluve (Hungary): The Northern Loess Wall of Katymár and the Hay Meadows and Loess Banks of Hajós

by Tamás Zsolt Vári, Elemér Pál-Molnár and Pál Sümegi

Diversity 2024, 16(10), 619; https://doi.org/10.3390/d16100619 - 6 Oct 2024

Cited by 3 | Viewed by 3599

Abstract

This study presents a comprehensive palaeoenvironmental reconstruction of the southern part of the Danube–Tisza interfluve in the Carpathian Basin from the Late Pleistocene to Early Holocene, addressing the region’s response to global climate forcings and local environmental factors based on multi-proxy analyses of [...] Read more.

This study presents a comprehensive palaeoenvironmental reconstruction of the southern part of the Danube–Tisza interfluve in the Carpathian Basin from the Late Pleistocene to Early Holocene, addressing the region’s response to global climate forcings and local environmental factors based on multi-proxy analyses of two key protected areas: the Katymár brickyard and the hay meadows and loess banks of Hajós. By integrating radiocarbon-dated malacological, macrobotanical, pollen, phytolith, geochemical, and sedimentological analyses, it was possible to provide a picture of past climate–ecosystem interactions. The Katymár North sequence provides an extended chronology from Marine Isotope Stage 3 (MIS3, ca. 36,000 cal BP) through the Last Glacial Maximum (LGM) and into the Early Holocene, while the Hajós sequence offers high-resolution data for the LGM–Holocene transition. By the late Ice Age, humidity and surface moisture superseded temperature as primary palaeoecological limiting factors, promoting ecotone-like forest–steppe environments during cooling periods. Full article

► Show Figures

Figure 1

15 pages, 4560 KB

Open AccessEditor’s ChoiceArticle

Influence of Biofloc Technology and Continuous Flow Systems on Aquatic Microbiota and Water Quality in Japanese Eel Aquaculture

by Hyunjun Choi, Jun Seong Park, Ju-Ae Hwang, Shin-Kwon Kim, Yehyeon Cha and Seung-Yoon Oh

Diversity 2024, 16(10), 601; https://doi.org/10.3390/d16100601 - 1 Oct 2024

Cited by 5 | Viewed by 3874

Abstract

Biofloc technology (BFT) systems heavily rely on microbiota to mitigate ammonia toxicity and manage essential nutrient cycling. Understanding the diversity and functional role of microbiota within BFT-applied aquaculture systems is crucial for ensuring sustainable operations. Though some studies exist on BFT microbiota, research [...] Read more.

Biofloc technology (BFT) systems heavily rely on microbiota to mitigate ammonia toxicity and manage essential nutrient cycling. Understanding the diversity and functional role of microbiota within BFT-applied aquaculture systems is crucial for ensuring sustainable operations. Though some studies exist on BFT microbiota, research on microbial differences in Japanese eel aquaculture is still limited, hindering the wider application of BFT systems. In this study, we analyzed the characteristics of water quality factors and microbiota in Japanese eel (Anguilla japonica) breeding water, applying the BFT system. Using a metabarcoding approach, the diversity and community structure of aquatic microbiota were compared between BFT and continuous flow (CF) systems. The pH was significantly higher in CF water, while total ammonia nitrogen (TAN) and nitrite (NO₂⁻-N) was higher in BFT water. Alpha diversity was significantly higher in BFT compared to CF systems, and it was correlated significantly with pH and TAN. In both BFT and CF water, the phyla Proteobacteria and Bacteroidota were found to be the most abundant. In the BFT water, a diverse array of bacterial taxa, including BFT-specific clades, were consistently present, while the microbiota in CF water was more variable and contained fewer specific taxa. In addition, bacterial functions related to nitrate reduction, sulfur compound oxidation, and chitinolysis were significantly more abundant in BFT than in CF systems. These findings highlight differences in water quality and microbiota between aquaculture systems, which can inform future research on the use of BFT for sustainable fish farming. Full article

(This article belongs to the Section Microbial Diversity and Culture Collections)

► Show Figures

Figure 1

14 pages, 3138 KB

Open AccessEditor’s ChoiceArticle

Reassessing the Diversity of the Arthropod-Pathogenic Genus Pandora Batko (Entomophthoromycotina; Erynioideae)

by Ann E. Hajek, Andrii P. Gryganskyi, Svetlana Y. Gouli, Tonya D. Bittner, Cheryl F. Sullivan and Bruce L. Parker

Diversity 2024, 16(10), 603; https://doi.org/10.3390/d16100603 - 1 Oct 2024

Cited by 6 | Viewed by 2842

Abstract

The fungal order Entomophthorales occurs worldwide, with most species infecting arthropods as pathogens. Species in this order can cause epizootics and change the behavior of infected hosts. Molecular data are available only for 20% of the known species, and distributions of species are [...] Read more.

The fungal order Entomophthorales occurs worldwide, with most species infecting arthropods as pathogens. Species in this order can cause epizootics and change the behavior of infected hosts. Molecular data are available only for 20% of the known species, and distributions of species are seldom summarized. Significant diversity of hosts, poor molecular data availability, and poor resolution of the phylogenetic relationships within this fungal order suggest that the diversity of these fungi is not sufficiently described. The subfamily Erynioideae includes 111 arthropod pathogens, divided among six genera, with the genus Pandora being one of the most diverse genera. Sequences of 18S, 28S, and ITS for two species are used to place these Pandora species in a phylogenic tree of the subfamily; this tree also supports our synonymy of the genus Furia with Pandora. Among the two species specifically covered in this paper, Pandora gloeospora was observed during epizootics occurring in mushroom flies (Diptera: Sciaridae) on Agaricus bisporus cultures in Pennsylvania, Delaware, and Maryland (US) mushroom farms and also in Florida on Pleurotus sp. Outside the US, P. gloeospora was found infecting several Nematocera (Diptera) in Europe (France) and Asia (China). Pandora sylvestris n. sp. was collected during epizootics occurring in larvae of hickory tussock moths, Lophocampa caryae (Lepidoptera: Erebidae), in hardwood forests in Michigan and Vermont. Full article

(This article belongs to the Section Phylogeny and Evolution)

► Show Figures

Figure 1

35 pages, 6301 KB

Open AccessEditor’s ChoiceArticle

Multi-Biomarker Analysis Uncovers High Spatio-Temporal Stability of a Subarctic Rhodolith (Lithothamnion glaciale) Bed Food Web

by Sean Hacker Teper, Christopher C. Parrish and Patrick Gagnon

Diversity 2024, 16(10), 597; https://doi.org/10.3390/d16100597 - 27 Sep 2024

Cited by 2 | Viewed by 3306

Abstract

We used lipid, fatty acid, and stable isotope analyses to investigate variation, over nine months, in the trophodynamics of 10 dominant cryptofaunal, macroalgal/algal, and environmental components from two sites within a rhodolith (Lithothamnion glaciale) bed in southeastern Newfoundland (Canada). There was [...] Read more.

We used lipid, fatty acid, and stable isotope analyses to investigate variation, over nine months, in the trophodynamics of 10 dominant cryptofaunal, macroalgal/algal, and environmental components from two sites within a rhodolith (Lithothamnion glaciale) bed in southeastern Newfoundland (Canada). There was an overall shift from a diatom-based food web following the spring phytoplankton bloom to a kelp/algae-based food web during fall, accompanied by preferred use of EPA (20:5ω3) over DHA (22:6ω3) in most cryptofauna. The food web contained three trophic levels that encompassed: (1) direct feeding relationships from primary producers (e.g., rhodoliths, macroalgae) to second-order consumers (e.g., sea stars, polychaetes); (2) trophic subsidy from within and outside the rhodolith bed via settlement, resuspension, and consumption of macroalgal fragments and other detrital organic matter; and (3) strong pelagic/benthic coupling. Riverine input did not affect cryptofaunal diets, as shown by the lack of terrestrial biomarkers at the study site nearest to the riverine input, and there were minor differences in trophodynamics between both study sites. The present study’s findings, applicable to relatively broad spatial and temporal domains, as well as those of complementary studies of the same rhodolith bed, uncover high spatio-temporal stability of the rhodolith bed framework and of resident cryptofaunal abundance, diversity, and trophodynamics. Full article

(This article belongs to the Special Issue Marine Nearshore Biodiversity—2nd Edition)

► Show Figures

Figure 1

26 pages, 10119 KB

Open AccessEditor’s ChoiceArticle

An Ecomorphological Description of Amblyraja radiata (Rajiformes: Rajidae) in Waters of Eastern Canada

by David W. Kulka, Carolyn M. Miri, Sheila Atchison and Mark R. Simpson

Diversity 2024, 16(10), 595; https://doi.org/10.3390/d16100595 - 26 Sep 2024

Cited by 3 | Viewed by 2979

Abstract

We examine the distribution, habitat association, morphometrics, meristics, and reproductive attributes of Amblyraja radiata over much of its Canadian range, Grand Banks to Arctic waters. It is distributed widely on the shelf and upper slope between 30 and 1288 m, reaching highest density [...] Read more.

We examine the distribution, habitat association, morphometrics, meristics, and reproductive attributes of Amblyraja radiata over much of its Canadian range, Grand Banks to Arctic waters. It is distributed widely on the shelf and upper slope between 30 and 1288 m, reaching highest density in 100–400 m and occupying most available temperatures, between −1.0 and 8.8 °C, but concentrating in 1.6–3.5 °C. The maximum (and average) size decreases with increasing latitude in a continuum from 102 cm (55 cm) in the south, to 45 cm (20 cm) in the north. The proportion of mature fish increases with depth (40% at 0–50 m to 80% at 1150–1200 m) and temperature (35% at <0 °C to 55% at 5+ °C). The size at maturity decreases south to north; size at onset of maturity in males—43 (south) to 19 (north) cm, in females—49 to 23 cm; length at 50% maturity in males—74 to 44 cm, in females—66 to 40 cm. A. radiata maturity is also reflected in the rapid increase in the size of secondary sexual characteristics. Some meristics were consistent over the entire study area (spines near the spiracles and shoulders) while others varied with latitude (teeth rows, midline spines, spines near the eyes, % dorsal fins joined, spines between dorsal fins) or by fish length/maturity; the tail length/total length as a proportion of total length decreased during Stage 1 then increased at onset of maturity. Full article

(This article belongs to the Special Issue Recent Advances in Ecology, Evolution and Biodiversity of the Chondrichthyan Fauna)

► Show Figures

Graphical abstract

22 pages, 2104 KB

Open AccessEditor’s ChoiceArticle

Burrowing Owls Require Mutualist Species and Ample Interior Habitat Space

by K. Shawn Smallwood and Michael L. Morrison

Diversity 2024, 16(9), 590; https://doi.org/10.3390/d16090590 - 19 Sep 2024

Cited by 1 | Viewed by 3290

Abstract

Mitigating habitat loss of western burrowing owls (Athene cunicularia hypugaea) often involves relocation from California ground squirrel (Otospermophilus beecheyi) burrows to offsite nest boxes. Naval Air Station Lemoore (NASL), Kings and Fresno counties, California, initiated this approach to displace [...] Read more.

Mitigating habitat loss of western burrowing owls (Athene cunicularia hypugaea) often involves relocation from California ground squirrel (Otospermophilus beecheyi) burrows to offsite nest boxes. Naval Air Station Lemoore (NASL), Kings and Fresno counties, California, initiated this approach to displace a regionally important population from airfield grasslands. We examined monitoring data of burrowing owls and fossorial mammals at NASL to assess mitigation options. Occupied nests increased by 33 (61%), with 47 nest box installations in 1997–2001, peaked at 87 in 1999, then declined by 50 through 2013. Although ≥13 nest boxes were occupied in 2000, none were occupied in 2003–2013. Within a 43.1 ha isolated grassland monitored for 13 years, nest site reuse in ground squirrel burrows averaged only 17% between any 2 consecutive years. Compared to the average density across grassland study areas, ground squirrel burrow systems/ha numbered 43% higher within 60 m of occupied nests and non-breeding-season burrows. Vegetation clearing to restore kangaroo rat (Dipodomys n. nitratoides) habitat preceded a 7.4-fold increase in ground squirrel burrow systems and a 4-fold increase in occupied nests, but drought-induced extirpation of ground squirrels eliminated occupied nests from the 43.1 ha grassland study area. Ground cover near occupied nests averaged 58% of the mean vegetation height and 67% of the mean percentage of bare ground in the field. Both nest sites and non-breeding-season burrows occurred >60 m interior to field edges 1.4 times more than expected. Non-breeding-season burrows averaged 328 m from same-year nest sites, and only 7% of non-breeding-season burrows were also used as nest sites. Mitigating habitat loss should be made more effective by fostering natural burrow construction by fossorial mammals on patches of short-stature vegetation that is sufficiently expansive to support breeding colonies of ≥12 pairs averaging ≥60 m from the field’s edge and a separation between non-breeding-season burrows and nest burrows minimally equal to mean nearest-neighbor distances among nests. Full article

(This article belongs to the Section Biodiversity Loss & Dynamics)

► Show Figures

Figure 1

22 pages, 10641 KB

Open AccessEditor’s ChoiceArticle

Systematic of a Massively Constructed Specimen of Iguanodon galvensis (Ornithopoda, Iguanodontidae) from the Early Barremian (Early Cretaceous) of Eastern Spain

by Josué García-Cobeña, Francisco J. Verdú and Alberto Cobos

Diversity 2024, 16(9), 586; https://doi.org/10.3390/d16090586 - 17 Sep 2024

Cited by 2 | Viewed by 7302

Abstract

Styracosternan ornithopods are plenty abundant in the Lower Cretaceous fossil record of Europe. In particular, Iguanodon, the second genus of dinosaurs described worldwide, has been found in UK, Belgium, France, Germany, and Spain, evidencing a wide geographical distribution. Currently, the genus Iguanodon [...] Read more.

Styracosternan ornithopods are plenty abundant in the Lower Cretaceous fossil record of Europe. In particular, Iguanodon, the second genus of dinosaurs described worldwide, has been found in UK, Belgium, France, Germany, and Spain, evidencing a wide geographical distribution. Currently, the genus Iguanodon comprises two species, the type species I. bernissartensis from the late Barremian–Aptian of Europe and I. galvensis from the early Barremian of Teruel, Spain. The latter species is well known mainly from perinate and juvenile specimens. Here, axial and appendicular fossils of an adult, large and massively constructed ornithopod from the lower Barremian (Lower Cretaceous) Camarillas Formation of Galve (province of Teruel, Spain) are described. Fossil dimensions and some osteological evidence reveal that the specimen was a large (roughly 10 m long) ornithopod. An autapomorphic feature in the ischium and other characters allow us to ascribe this specimen to I. galvensis. In addition, postcranial co-ossification and fusion of the neurocentral suture indicate that the specimen was skeletally mature. Part of the material studied here was unknown in adults of I. galvensis, providing a better knowledge of the axial and appendicular region of this species. Full article

► Show Figures

Figure 1

27 pages, 9128 KB

Open AccessEditor’s ChoiceArticle

Revalidation of the Arboreal Asian Snake Genera Gonyophis Boulenger, 1891; Rhynchophis Mocquard, 1897; and Rhadinophis Vogt, 1922, with Description of a New Genus and Tribe (Squamata: Serpentes: Colubridae)

by Van Wallach, Rune Midtgaard and Emma Hsiao

Diversity 2024, 16(9), 576; https://doi.org/10.3390/d16090576 - 13 Sep 2024

Cited by 4 | Viewed by 6057

Abstract

Based on the latest molecular phylogenies of Gonyosoma sensu lato, which recovered five clades with robust support, we utilize morphological characters to demonstrate the distinctiveness of each clade, resulting in the resurrection of three genera (Gonyophis Boulenger, 1891; Rhynchophis Mocquard, 1897; and [...] Read more.

Based on the latest molecular phylogenies of Gonyosoma sensu lato, which recovered five clades with robust support, we utilize morphological characters to demonstrate the distinctiveness of each clade, resulting in the resurrection of three genera (Gonyophis Boulenger, 1891; Rhynchophis Mocquard, 1897; and Rhadinophis Vogt, 1922) and a proposal of a new genus and a new tribe. A synopsis of the group, with descriptions and diagnoses, is provided for the five genera and eight species in addition to distribution maps and illustrations of the head of each taxon. An artificial key to the species and genera in the new tribe is presented in addition to the estimated origin times for each clade. Full article

(This article belongs to the Collection Feature Papers in Animal Diversity)

► Show Figures

Figure 1

26 pages, 10142 KB

Open AccessEditor’s ChoiceArticle

Dispersal Ecology of Golden Eagles (Aquila chrysaetos) in Northern Greece: Onset, Ranging, Temporary and Territorial Settlement

by Lavrentis Sidiropoulos, D. Philip Whitfield, Konstantinos Poirazidis, Elisabeth Navarrete, Dimitris P. Vasilakis, Anastasios Bounas, Elzbieta Kret and Vassiliki Kati

Diversity 2024, 16(9), 580; https://doi.org/10.3390/d16090580 - 13 Sep 2024

Cited by 6 | Viewed by 6103

Abstract

Natal dispersal is a crucial period for raptors with serious implications for individuals’ survival and population demography. In this study we analyzed data from 18 GPS-tracked golden eagles in order to describe their dispersal ecology in northern Greece, where the species feeds mostly [...] Read more.

Natal dispersal is a crucial period for raptors with serious implications for individuals’ survival and population demography. In this study we analyzed data from 18 GPS-tracked golden eagles in order to describe their dispersal ecology in northern Greece, where the species feeds mostly on tortoises. Young eagles in our population dispersed at 176 days post fledging, spent their first year of independence relatively close (40–60 kms) to their natal ranges and exhibited a variable temporary settlement behavior. Overall dispersal range sizes did not differ seasonally, but temporary settlement area range sizes were significantly larger in winter. Three eagles survived to territorial settlement and occupied ranges 20–60 kms from their natal areas. The application and refinement of the Scottish GET dispersal ranging model suggested that eagles used areas that had higher topographical relief and lower canopy cover during their natal dispersal. Habitat heterogeneity seems to also be influential during temporary settlement. Our study is the first to provide both such insights for golden eagles in southern eastern Europe and a method for delineating temporary settlement areas for the species. Our findings can be explained in terms of food and habitat availability. We highlight the importance of conserving heterogeneous open areas of complex topography and applying proactive management measures within temporary settlement areas for our population’s conservation. Full article

(This article belongs to the Special Issue Conservation and Ecology of Raptors—2nd Edition)

► Show Figures

Figure 1

10 pages, 1826 KB

Open AccessEditor’s ChoiceArticle

An Initial Genetic Assessment of the Emblematic Pumas of the Torres del Paine UNESCO Biosphere Reserve

by L. Mark Elbroch, Byron V. Weckworth, Kristine Pilgrim, Omar Ohrens, Nicolás Lagos, Stephanny Arroyo-Arce, Mauricio Montt, Dania Goic and Michael K. Schwartz

Diversity 2024, 16(9), 581; https://doi.org/10.3390/d16090581 - 13 Sep 2024

Cited by 1 | Viewed by 4069

Abstract

Physical and genetic isolation are recognized as significant threats to wildlife, especially in large carnivores inhabiting fragmented landscapes. We conducted an initial genetic assessment of pumas (Puma concolor) using 19 microsatellite loci for the emblematic puma population in the Torres del [...] Read more.

Physical and genetic isolation are recognized as significant threats to wildlife, especially in large carnivores inhabiting fragmented landscapes. We conducted an initial genetic assessment of pumas (Puma concolor) using 19 microsatellite loci for the emblematic puma population in the Torres del Paine UNESCO Biosphere Reserve in southernmost Chile, which exhibits some distinctive phenology that some local people speculate may be due to isolation and inbreeding depression. We extracted DNA from 385 scats collected in the field, of which 96 were identified as puma, representing 20 unique individuals. Torres del Paine pumas exhibited an H_o (0.51) only slightly lower than H_e (0.53), with 2 of the 19 loci significantly out of Hardy–Weinberg Equilibrium. Tests for a recent bottleneck of the population were not significant. The small sample size of individuals notwithstanding, these results seemingly do not support high levels of inbreeding. We also identified individual pumas in the field and assessed them for observable cowlicks (twirls of fur on their backs), a trait some have associated with genetic inbreeding depression in other puma populations. A total of 7 of 39 pumas exhibited cowlicks, consistent with geographic patterns of cowlicks within the species. Our tests exploring population structure among local pumas provided the most support for a single-population cluster, but we explored secondary structures as well, given its conservation implications. We encourage additional sampling in the region to further explore population structure and connectivity and determine the conservation status of the region’s pumas to guide the development of best strategies to ensure their persistence. Full article

(This article belongs to the Section Animal Diversity)

► Show Figures

Figure 1

37 pages, 18007 KB

Open AccessEditor’s ChoiceArticle

The Problematic Genus Liodesmus Wagner and a New Genus of Caturoidea (Halecomorphi, Neopterygii) from the Upper Jurassic Solnhofen-Archipelago

by Martin Ebert and Adriana López-Arbarello

Diversity 2024, 16(9), 568; https://doi.org/10.3390/d16090568 - 12 Sep 2024

Cited by 2 | Viewed by 6524

Abstract

Our revision of the type material of Liodesmus led to significant adjustments in our understanding of the taxon when the original type specimen of Pholidophorus gracilis, which was later determined as the type species of the genus Liodesmus, was recently found in [...] Read more.

Our revision of the type material of Liodesmus led to significant adjustments in our understanding of the taxon when the original type specimen of Pholidophorus gracilis, which was later determined as the type species of the genus Liodesmus, was recently found in the collection in Berlin. It had been confused with a specimen that was described as the type specimen of the species Liodesmus gracilis in the collection in Munich. Moreover, the Munich specimen was mistakenly considered by all authors who have studied Liodesmus as a type specimen for the genus Liodesmus. However, the original holotype of Pholidophorus gracilis and this Munich specimen of Liodesmus gracilis belong to two different families. Caturus brevicostatus, whose holotype was recently found in Berlin as well, is described in detail here for the first time. Liodesmus sprattiformis is now described under the new genus Nasrinsotoudehichthys outside Caturidae but within the Caturoidea. Since all specimens that have been described so far under Liodesmus either belong to other, previously described genera, belong to new genera clearly outside the description of the genus Liodesmus, or are nomina dubia (including the type species Pholidophorus gracilis), the genus Liodesmus and the Liodesmidae are nomina dubia as well. Full article

(This article belongs to the Special Issue Diversity, Biogeography and Evolution of Actinopterygians)

► Show Figures

Figure 1

18 pages, 1028 KB

Open AccessEditor’s ChoiceArticle

Structure of Reef Fish Families (Butterflyfishes and Angelfishes) at Isolated Oceanic Reefs in the Indian Ocean: Christmas Island and the Cocos (Keeling) Islands

by Jean-Paul A. Hobbs and Maya Srinivasan

Diversity 2024, 16(9), 569; https://doi.org/10.3390/d16090569 - 12 Sep 2024

Cited by 3 | Viewed by 2471

Abstract

There has been substantial research on the factors that structure reef fish assemblages, but this has mostly focused on nearshore or continental reefs. This study examines patterns of abundance and species composition for two iconic groups of coral reef fishes, angelfishes (family Pomacanthidae) [...] Read more.

There has been substantial research on the factors that structure reef fish assemblages, but this has mostly focused on nearshore or continental reefs. This study examines patterns of abundance and species composition for two iconic groups of coral reef fishes, angelfishes (family Pomacanthidae) and butterflyfishes (family Chaetodontidae) at two isolated, oceanic reefs in the Indian Ocean: Christmas Island and the Cocos (Keeling) Islands. Six explanatory variables were investigated to determine whether large-scale physical factors are more important than fine-scale biotic factors in structuring reef fish communities on oceanic islands. For angelfishes, depth was the factor that most explained patterns in abundance (explaining 46.5% of the variation), species richness (44.8%) and composition (15.3%), with both abundance and species richness being greater at 20 m than at 5 m. Differences in species composition were greater between depths than between islands. For butterflyfishes, variation in abundance and species richness was best explained by the difference in aspect or exposure among sites, though abundance and composition also differed significantly between Christmas Island and the Cocos (Keeling) Islands. Large-scale variation in the structure of these reef fish assemblages could not be explained based on differences in habitat diversity, or coral and algal cover. This study indicates that large-scale physical factors (island location, exposure, depth) are more important than fine-scale biotic factors in structuring reef fish assemblages on oceanic islands. Full article

(This article belongs to the Special Issue Diversity in 2024)

► Show Figures

Figure 1

18 pages, 9810 KB

Open AccessEditor’s ChoiceArticle

Biodiversity and Possible Bio-Indicators of Mediterranean Temporary Ponds in Southern Apulia, Italy

by Leonardo Beccarisi, Vincenzo Zuccarello, Rita Accogli and Genuario Belmonte

Diversity 2024, 16(9), 559; https://doi.org/10.3390/d16090559 - 7 Sep 2024

Cited by 3 | Viewed by 3222

Abstract

Mediterranean Temporary Ponds (MTPs) represent a priority habitat according to Directive 92/43/EEC (Natura 2000 code: 3170*). These are very shallow water habitats only seasonally flooded, with a flora mainly composed of Mediterranean therophytic and geophytic species. Its extreme seasonality and small size make [...] Read more.

Mediterranean Temporary Ponds (MTPs) represent a priority habitat according to Directive 92/43/EEC (Natura 2000 code: 3170*). These are very shallow water habitats only seasonally flooded, with a flora mainly composed of Mediterranean therophytic and geophytic species. Its extreme seasonality and small size make this habitat highly vulnerable and hard to manage. In recent Italian monitoring campaigns, the conservation status of MTP 3170* was considered inadequate. In Apulia, where the habitat is considered as “the most vulnerable type”, 73 sites were censused, with a total coverage of about 10,000 m². The present work refers to the monitoring for three years of a total of 16 habitat 3170* sites, with the aim of better describing faunal indicator species for this priority habitat. A total of 158 taxa of flora and 103 of fauna were identified from 54 floristic and 44 faunistic samplings in total, with a robust updating of the listed biodiversity. For the first time a group of faunal species is proposed as an indicator of the habitat MTP 3170*. The conservation status, assessed on the basis of structural and functional criteria, gave a satisfactory status for seven sites and an unsatisfactory one (variously rated as inadequate or bad) for nine. Full article

(This article belongs to the Special Issue Diversity, Ecology and Conservation of Zooplankton)

► Show Figures

Figure 1

24 pages, 34155 KB

Open AccessEditor’s ChoiceArticle

Anatomy and Relationships of a New Gray Whale from the Pliocene of Piedmont, Northwestern Italy

by Michelangelo Bisconti, Piero Damarco, Lorenza Marengo, Mattia Macagno, Riccardo Daniello, Marco Pavia and Giorgio Carnevale

Diversity 2024, 16(9), 547; https://doi.org/10.3390/d16090547 - 5 Sep 2024

Cited by 3 | Viewed by 4232

Abstract

A new fossil gray whale genus and species, Glaucobalaena inopinata, is established based on craniomandibular remains from the Pliocene Sabbie d’Asti Formation, Piedmont, northwestern Italy. The holotype (MGPT-PU 19512) consists of two cranial fragments corresponding to the posterolateral corners of the skull, [...] Read more.

A new fossil gray whale genus and species, Glaucobalaena inopinata, is established based on craniomandibular remains from the Pliocene Sabbie d’Asti Formation, Piedmont, northwestern Italy. The holotype (MGPT-PU 19512) consists of two cranial fragments corresponding to the posterolateral corners of the skull, including both partial periotics, and in the posterior portion of the right mandibular ramus preserving the condyle and angular process. The new taxon is characterized by gray whale (eschrichtiid) synapomorphies in the posterior portion of the mandible (dorsally raised mandibular condyle with articular surface faced dorsoposteriorly, well-developed and robust angular process of the mandible) and in the earbone (massive transverse elongation of the pars cochlearis, indistinct flange of the ventrolateral tuberosity, and triangular and short anterior process of the periotic). A CT scan of the cranial fragments allowed us to reconstruct tridimensional renderings of the periotic, revealing the dorsal morphology of this bone. A phylogenetic analysis confirmed the inclusion of Glaucobalaena inopinata within Eschrichtiidae (the family to whom gray whales are included) and showed that it is monophyletic with Gricetoides aurorae; our phylogenetic results show that Eschrichtioides gastaldii is the sister group of the genus Eschrichtius. Our work lends further support to the idea that Eschrichtiidae is a separate family of baleen whales, characterized by specialized ecomorphological characters evident in both skull and mandibular architecture. Full article

► Show Figures

Figure 1

53 pages, 7160 KB

Open AccessEditor’s ChoiceArticle

New Evidence of the Feeding Behaviors of Coronodon and the Origin of Filter Feeding in Mysticetes (Mammalia: Cetacea) Revisited

by Jonathan H. Geisler, Brian L. Beatty and Robert W. Boessenecker

Diversity 2024, 16(9), 549; https://doi.org/10.3390/d16090549 - 5 Sep 2024

Cited by 4 | Viewed by 5841

Abstract

Coronodon includes species of basal toothed mysticetes that were initially interpreted as engaging in raptorial feeding and dental filtration. Here, the feeding of this extinct genus is revisited based on recently described specimens and species. Associations between tooth position and types of dental [...] Read more.

Coronodon includes species of basal toothed mysticetes that were initially interpreted as engaging in raptorial feeding and dental filtration. Here, the feeding of this extinct genus is revisited based on recently described specimens and species. Associations between tooth position and types of dental wear were tested, and evidence for feeding behaviors was tabulated using scores from 14 craniodental characters, each mapped onto five alternate phylogenetic hypotheses. Individual character states were interpreted as being supportive, neutral, or contradictory evidence to raptorial feeding, suction feeding, baleen filtration, or dental filtration. Wear in Coronodon was found to be significantly more concentrated on mesial teeth, mesial cusps, higher cusps, and upper teeth. Upper teeth also had mesial cusps more worn than distal cusps, inconsistent with predictions of the dental filtration hypothesis. Wear in notches was correlated with wear on neighboring cusps, and side wear was concentrated on occlusal sides, suggesting both were caused by raptorial feeding. These observations raise the possibility that raptorial feeding was the primary, and maybe even the only, mode of feeding for Coronodon. The feeding scores of reconstructed ancestors leading to crown mysticetes typically display a stepwise decrease in raptorial feeding, a stepwise increase in baleen filtration, and, occasionally, an intermediate but weakly supported stage of dental filtration. For most toothed mysticetes, there is little evidence for or against suction feeding. The method we have developed for studying the origin of baleen can be expanded and allows for multiple hypotheses to be tested without undue emphasis on any particular taxon or set of characters. Full article

(This article belongs to the Special Issue Evolution of Crown Cetacea)

► Show Figures

Figure 1

16 pages, 3588 KB

Open AccessEditor’s ChoiceArticle

First Virtual Reconstruction of a Mosasaurid Brain Endocast: Description and Comparison of the Endocast of Tethysaurus nopcsai with Those of Extant Squamates

by Rémi Allemand, Michael J. Polcyn, Alexandra Houssaye, Peggy Vincent, Camilo López-Aguirre and Nathalie Bardet

Diversity 2024, 16(9), 548; https://doi.org/10.3390/d16090548 - 5 Sep 2024

Cited by 4 | Viewed by 5112

Abstract

Paleoneurological studies of mosasaurids are few and limited to old partial reconstructions made from latex casts on Platecarpus and Clidastes. Here, the brain endocasts of three specimens of the early mosasaurid Tethysaurus nopcsai from the Turonian of Morocco are reconstructed for the [...] Read more.

Paleoneurological studies of mosasaurids are few and limited to old partial reconstructions made from latex casts on Platecarpus and Clidastes. Here, the brain endocasts of three specimens of the early mosasaurid Tethysaurus nopcsai from the Turonian of Morocco are reconstructed for the first time by using micro-computed tomography. Comparisons between Tethysaurus and the later Platecarpus and Clidastes show that distinct endocranial organizations have occurred within the clade through time, including differences in the flexure of the endocast and the size of the parietal eye. The physiological consequences of such variability remain unclear and further investigations are required to better interpret these variations. In addition, the endocast of Tethysaurus was compared to those of extant anguimorphs, iguanians, and snakes, using landmark-based geometric morphometrics. The results revealed that Tethysaurus exhibits a unique combination of endocranial features compared to extant toxicoferans. Contrary to previous statements, we find no strong resemblance in endocast morphology between Tethysaurus and varanids. Rather, the endocast of Tethysaurus shows some morphological similarities with each of the clades of anguimorphs, iguanians, and snakes. In this context, while a notable phylogenetic signal is observed in the variability of squamate endocasts, it is premature to establish any phylogenetic affinities between mosasaurids and extant squamates based solely on endocast morphologies. Full article

(This article belongs to the Special Issue Making New Out of the Old: Recent Biological Advances on Mesozoic Marine Reptiles)

► Show Figures

Figure 1

42 pages, 47060 KB

Open AccessEditor’s ChoiceArticle

A Molecular-Informed Species Inventory of the Order Ceramiales (Rhodophyta) in the Narragansett Bay Area (Rhode Island and Massachusetts), USA

by Thomas Irvine, Brian Wysor and Alicia Beauvais

Diversity 2024, 16(9), 554; https://doi.org/10.3390/d16090554 - 5 Sep 2024

Cited by 1 | Viewed by 4346

Abstract

Narragansett Bay is an estuarine system in the western North Atlantic Ocean that harbors a diverse marine flora, providing structure, habitat, and food for native biodiversity. This area has been the center of numerous environmental, biological, ecological, and oceanographic studies; however, marine macroalgae [...] Read more.

Narragansett Bay is an estuarine system in the western North Atlantic Ocean that harbors a diverse marine flora, providing structure, habitat, and food for native biodiversity. This area has been the center of numerous environmental, biological, ecological, and oceanographic studies; however, marine macroalgae have not been extensively examined using modern molecular methods. Here, we document the biodiversity of the red algal order Ceramiales based on DNA sequence comparisons of the 3′ end of the RuBisCo large subunit (rbcL-3P) and the universal plastid amplicon (UPA). Thirty-seven distinct species of this order were identified and validated with molecular data, including five new species reports and at least one new report of an introduced species, Antithamnionella spirographidis, in the vicinity of Narraganset Bay. Novel sequence data were generated for numerous species, and it was discovered that the UPA marker, which has been less frequently used in red algal floristics, revealed an identical inventory of ceramialean algae as the rbcL-3P marker. Thus, the shorter length of the UPA marker holds promise for DNA metabarcoding studies that seek to elucidate biodiversity across algal phyla. Full article

(This article belongs to the Special Issue DNA Barcodes for Evolution and Biodiversity—2nd Edition)

► Show Figures

Graphical abstract

20 pages, 6172 KB

Open AccessEditor’s ChoiceArticle

Bacterial Community Structure and Patterns of Diversity in the Sediments of Mountain Rock Basins from a National Park

by Amaya de Cos-Gandoy, Andrea Serrano-Bellón, María Macías-Daza, Blanca Pérez-Uz, Richard A. J. Williams, Abel Sanchez-Jimenez and Mercedes Martín-Cereceda

Diversity 2024, 16(9), 544; https://doi.org/10.3390/d16090544 - 4 Sep 2024

Cited by 3 | Viewed by 4980

Abstract

Bacterial microbiomes influence global carbon and nutrient cycling as the environment changes. Rain-fed rock basins are ephemeral aquatic systems, potentially subject to extreme environmental stress, that can host a wide variety of biological communities, including bacteria. However, bacterial communities are barely described in [...] Read more.

Bacterial microbiomes influence global carbon and nutrient cycling as the environment changes. Rain-fed rock basins are ephemeral aquatic systems, potentially subject to extreme environmental stress, that can host a wide variety of biological communities, including bacteria. However, bacterial communities are barely described in these habitats. Here we provide a detailed description on the occurrence, diversity and distribution patterns of the bacterial communities within and between rain-fed granite mountain rock basins located in the Sierra de Guadarrama National Park, Spain, using high-throughput sequencing of 16S RNA. We recovered a highly diverse community consisting of 3174 operational taxonomic units (OTUs) belonging to 32 phyla. In total, 50% of OTUs were shared among basins and 6–10% were basin-exclusive OTUs, suggesting a robust global bacterial metacommunity colonizes the basins. The existence of 6% replicate-exclusive OTUs and the fact that at least four replicates were required to catalogue 90% of the basin bacterial community emphasized the heterogeneity of these habitats. Both environmental filtering and random dispersal are likely to be involved in the arrangement of the bacterial communities. The taxa identified in this study are versatile in metabolism, and some have biotechnological potential. The taxonomic affiliation of many of the OTUs found suggests that rain-fed rock basins could be a resource for mining novel bacterial biocompounds. Full article

(This article belongs to the Special Issue Montane Ecosystems and Diversity)

► Show Figures

Figure 1

16 pages, 1506 KB

Open AccessEditor’s ChoiceArticle

Temporal Changes in Bank Vole Populations Indicate Species Decline

by Linas Balčiauskas, Marius Jasiulionis, Vitalijus Stirkė and Laima Balčiauskienė

Diversity 2024, 16(9), 546; https://doi.org/10.3390/d16090546 - 4 Sep 2024

Cited by 5 | Viewed by 2942

Abstract

Because of their wide distribution, short life cycle, rapid reproduction, and sensitivity to the environment, rodents can indicate changes in habitat quality and climate variables. Long-term studies are needed to verify these changes and assumptions about their causes. We analyzed small mammal trapping [...] Read more.

Because of their wide distribution, short life cycle, rapid reproduction, and sensitivity to the environment, rodents can indicate changes in habitat quality and climate variables. Long-term studies are needed to verify these changes and assumptions about their causes. We analyzed small mammal trapping data in Lithuania, covering the period 1975–2023, with 1821 trapping sites and 57,426 small mammal individuals, with a focus on the bank vole (Clethrionomys glareolus). The aim of this study was to assess temporal changes in the relative abundance and proportion of this species in small mammal communities in relation to their habitats. With 21,736 captured individuals, C. glareolus was a dominant species in the country; its proportion in general was 37.9%, with 60.0% in forests. Open habitats, meadows and agricultural land were characterized by the lowest species proportions. Our main findings were the confirmation of decreasing abundances and proportions of C. glareolus since the 1990s, the absence of cyclical fluctuations in the relative abundances of the species in general and in forest habitats, and the introduction of a south–north cline in species proportions. The status of this temperate and boreal forest species is subject to change, with implications for the diversity of the mid-latitude small mammal community. Full article

(This article belongs to the Special Issue Diversity in 2024)

► Show Figures

Graphical abstract

40 pages, 18114 KB

Open AccessEditor’s ChoiceArticle

Arachnid Assemblage Composition Diverge between South- and North-Facing Slopes in a Levantine Microgeographic Site

by Meir Finkel, Amit Ben-Asher, Gur Shmula, Igor Armiach Steinpress, Zeana Ganem, Rami Hammouri, Erika Garcia, Tamás Szűts and Efrat Gavish-Regev

Diversity 2024, 16(9), 540; https://doi.org/10.3390/d16090540 - 3 Sep 2024

Cited by 2 | Viewed by 3666

Abstract

Local microgeographic sites subdivided by sharp ecological and climatic contrasts are important platforms for measuring biodiversity patterns and inferring the possible effect of climatic and ecological variables on species distributions and habitat use. Here, we report results from 24 months (September 2019–August 2021) [...] Read more.

Local microgeographic sites subdivided by sharp ecological and climatic contrasts are important platforms for measuring biodiversity patterns and inferring the possible effect of climatic and ecological variables on species distributions and habitat use. Here, we report results from 24 months (September 2019–August 2021) of continuous pitfall trapping collection in Lower Nahal Keziv, Western Upper Galilee, Israel (“Evolution Canyon” II (hereafter—EC II)). This site receives an average annual rainfall of 784 mm and contains two slopes that differ markedly by solar radiation and plant formation. The first is the south-facing slope (SFS), which is characterized as a semiarid garrigue and open grassland. The second is the contrasting north-facing slope (NFS), which is characterized by a more humid East Mediterranean forest. The slopes are separated by a narrow valley bottom (VB). Analysis of ca. 1750 arachnid specimens, collected from 70 pitfall traps along the slopes and valley, indicates significantly different arachnid assemblages between the NFS and SFS, likely due to the differences in solar radiation that affect plant-cover percentage, which in turn affects the arachnid assemblage composition. In addition to 98 arachnid taxa collected and identified to species and morphospecies level, this study resulted in the discovery of two species new to science, which are described as part of this publication (100 arachnid species and 11 additional taxa that were not identified to species, a total of 111 taxa). Our study, moreover, contributes new ecological data on the spatial and temporal distribution of arachnids, and therefore attests to the importance of year-round sampling in an understudied region. Overall, our study enables a better understanding of arachnid diversity and their distributions and serves as a reference for future research aimed at testing the effect of climate change and other environmental factors that influence arachnid assemblages in natural habitats. Full article

(This article belongs to the Special Issue State-of-the-Art Mediterranean Soil Arthropods Diversity)

► Show Figures

Graphical abstract

14 pages, 4929 KB

Open AccessEditor’s ChoiceArticle

Biodiversity as a Tool in the Assessment of the Conservation Status of Coastal Habitats: A Case Study from Calabria (Southern Italy)

by Antonio Morabito, Carmelo Maria Musarella, Giuseppe Caruso and Giovanni Spampinato

Diversity 2024, 16(9), 535; https://doi.org/10.3390/d16090535 - 2 Sep 2024

Cited by 3 | Viewed by 3393

Abstract

The Mediterranean coasts are threatened by human activities that alter habitats structure and functionality, modifying vegetation and causing the loss of typical species. The definition of the conservation status of coastal habitats is essential to preserve these fragile environments through planned policies. This [...] Read more.

The Mediterranean coasts are threatened by human activities that alter habitats structure and functionality, modifying vegetation and causing the loss of typical species. The definition of the conservation status of coastal habitats is essential to preserve these fragile environments through planned policies. This study aims to assess the conservation status of the habitats of community interest (sensu EEC Directive 43/92) through the analysis of biodiversity and correlating it with urbanisation. A total of 73 vegetation relevés were carried out, so allowing 13 revealing different habitats to be identified. The total plant species diversity per habitat was measured by means of the H-index, also used to assess naturalness (N), differently considering native, alien, and disturbance species. To correlate the N index with distance from urban centres, a statistical analysis was performed. The analysis showed the highest values of H⁺ were found in habitats 2240, 2110, 2260, and 2230, while lowest values were observed in habitats 2270* and 2240. The habitats 2270* and 2240, the closest to urban centres, have a lower naturalness score than habitats 1420, 2120, 2250*, and 2270*, where higher naturalness scores have been found and therefore lower levels of disturbance. The criteria and methods discussed in this study can be used in coastal management in order to identify the most sensitive habitats and implement an effective conservation strategy. Full article

(This article belongs to the Special Issue Biodiversity Conservation Planning and Assessment)

► Show Figures

Figure 1

14 pages, 693 KB

Open AccessEditor’s ChoiceArticle

Exposure of American Black Bears (Ursus americanus) to Ticks, Tick-Borne Diseases, and Intestinal Parasites in Wisconsin

by Nika S. Reichert, Daniela Mathieu, Christopher J. Katz and Kent A. Hatch

Diversity 2024, 16(9), 537; https://doi.org/10.3390/d16090537 - 2 Sep 2024

Cited by 2 | Viewed by 3599

Abstract

We surveyed 159 American black bears (Ursus americanus) over a period of three years for the occurrence of ticks, tick-borne diseases, and intestinal parasites in Wisconsin. We collected blood from the bears to test for the presence of antibodies to Borrelia [...] Read more.

We surveyed 159 American black bears (Ursus americanus) over a period of three years for the occurrence of ticks, tick-borne diseases, and intestinal parasites in Wisconsin. We collected blood from the bears to test for the presence of antibodies to Borrelia burgdorferi (Lyme disease), Rickettsia rickettsii (Rocky Mountain spotted fever (RMSF)), Babesia, Ehrlichia, Ehrlichia canis, Brucella canis, and Anaplasma phagocytophilum. We also examined scat samples for intestinal parasites. We commonly found the tick Dermacentor variabilis, but also present the first report of Rhipicephalus sanguineus on black bears. We detected antibodies to Lyme disease and RMSF. We detected antibodies to E. canis for the first time in a bear and both antibodies to R. rickettsii and A. phagocytophilum for the first time in a black bear in Wisconsin. No antibodies for Babesia or Br. canis were detected. We found eggs of the intestinal parasite Baylasascaris transfuga as well as a low number of Toxascara leonina and unknown Capillaria species occurrences in the examined feces. Full article

(This article belongs to the Special Issue Wildlife Welfare)

► Show Figures

Graphical abstract

22 pages, 1625 KB

Open AccessEditor’s ChoiceArticle

The Diet of Eleonora’s Falcons (Falco eleonorae) during the Autumn Migration of Passerine Birds across the Aegean Sea

by Dietrich Ristow and Michael Wink

Diversity 2024, 16(9), 538; https://doi.org/10.3390/d16090538 - 2 Sep 2024

Cited by 7 | Viewed by 4621

Abstract

Every year, several hundred million birds cross the Mediterranean on their migration from Eurasia to their wintering quarters in Africa. As many migrants travel at night or at high altitudes, direct observations of bird migration are difficult and thus our information about migrating [...] Read more.

Every year, several hundred million birds cross the Mediterranean on their migration from Eurasia to their wintering quarters in Africa. As many migrants travel at night or at high altitudes, direct observations of bird migration are difficult and thus our information about migrating species, numbers and timing is incomplete. An indirect way to assess autumn migration is the analysis of prey remains of Eleonora’s Falcons (Falco eleonorae). These falcons breed in large colonies on islands in the Mediterranean and on the Canary Islands. Many migrants have to pass these islands on their flight to their African wintering quarters. Eleonora’s Falcons appear to be adapted to the autumn bird migration and raise their young between August and October, when migrating birds are abundant. When nestlings have to be fed, falcons exclusively hunt small birds of 10 to 150 g body mass, whereas they prey mostly on aerial invertebrates (Coleoptera, Hymenoptera, Diptera, Orthoptera, Hemiptera, Odonata, Lepidoptera) from November to July. We studied Eleonora’s Falcons from 1965 to 2001 on a rocky islet, north of Crete, which harboured a colony of about 200 breeding pairs. In 1969, 1971, 1977, and 1988 we systematically monitored and collected the pluckings and cached food items in 22 to 36 nest sites each year. Pluckings were systematically analysed later in Germany using a reference collection of bird feathers for identification. In total, we determined more than 111 prey species (mostly Passerines) comprising more than 13,450 individuals. The top 12 prey species were: Willow Warbler (27.8% of all prey items), Red-backed Shrike (10.7%), Spotted Flycatcher (9.9%), Whinchat (8.8%), Common Whitethroat (5.1%), Wood Warbler (3.8), Tree Pipit (2.9%), Icterine Warbler (2.5%), Greater Short-toed Lark (2.5%), Northern Wheatear (1.8%), Common Nightingale (1.6%), and European Pied Flycatcher (1.5%). Eleonora’s Falcons are selective hunters to some degree; thus, the phenology and abundance data derived from the plucking analyses are biased towards slow-flying species or smaller birds (only up to a body mass of 150 g). When the young falcons develop and grow, food demand increases concomitantly. Comparing the total weight of prey over time indicates a correlation with food demand and in consequence with the number of prey items brought to the nest sites by the falcons. Full article

(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)

► Show Figures

Graphical abstract

14 pages, 7223 KB

Open AccessEditor’s ChoiceArticle

Microclimatic Growth Rates of Batrachochytrium salamandrivorans under Current and Future Climates: A Very High Spatial Resolution SDM for Bsal and Salamandra salamandra (Linnaeus, 1758) within Forest Habitats of the European Hotspot Area

by Felix Deiß, Philipp Ginal and Dennis Rödder

Diversity 2024, 16(8), 510; https://doi.org/10.3390/d16080510 - 22 Aug 2024

Cited by 2 | Viewed by 4015

Abstract

Chytridiomycosis is one of the greatest threats to the diversity of amphibians worldwide. Caused by the chytrid fungus Batrachochytrium salamandrivorans (Bsal), it plays a decisive role in species declines. Bsal is particularly harmful to the European fire salamander (Salamandra salamandra), causing [...] Read more.

Chytridiomycosis is one of the greatest threats to the diversity of amphibians worldwide. Caused by the chytrid fungus Batrachochytrium salamandrivorans (Bsal), it plays a decisive role in species declines. Bsal is particularly harmful to the European fire salamander (Salamandra salamandra), causing ulcerations, anorexia and ataxia, which ultimately lead to death. While most studies have focused on the geographic expansion of the pathogen, there is little high-resolution information available. Therefore, we chose a three-step approach in this study: We (I) used a mechanistic distribution model to project the microclimatic growth rate of Bsal within its invasive range on a spatially very high resolution (25 m). We (II) used a correlative distribution model to predict the potential distribution of S. salamandra and (III) applied n-dimensional hypervolumes to quantify the realized microclimatic niches of both species and examine their overlaps. We estimated future trends based on comparisons among three climate scenarios, the current microclimatic conditions and a +2 °C and +4 °C global mean temperature scenario. We demonstrated that Bsal finds suitable growth conditions everywhere within our study area, thus putting S. salamandra at high risk. However, climate change could lead to less suitable thermal conditions for Bsal, possibly providing a loophole for S. salamandra. Full article

(This article belongs to the Special Issue Application of GIScience and Remote Sensing in Biodiversity Conservation)

► Show Figures

Figure 1

37 pages, 40371 KB

Open AccessEditor’s ChoiceArticle

Middle Miocene (Langhian and Lower Serravallian/Badenian) Scallops (Bivalvia: Pectinidae) from the Precious Collections of the Croatian Natural History Museum

by Marija Bošnjak, Oleg Mandic and Jasenka Sremac

Diversity 2024, 16(8), 508; https://doi.org/10.3390/d16080508 - 21 Aug 2024

Cited by 3 | Viewed by 4120

Abstract

The Croatian Natural History Museum (CNHM) houses rich fossil collections from the Neogene deposits of Northern Croatia, comprising numerous scallops (Bivalvia: Pectinidae). During the Middle Miocene (Badenian = Langhian and early Serravallian), this region was located at the southwestern margin of the Central [...] Read more.

The Croatian Natural History Museum (CNHM) houses rich fossil collections from the Neogene deposits of Northern Croatia, comprising numerous scallops (Bivalvia: Pectinidae). During the Middle Miocene (Badenian = Langhian and early Serravallian), this region was located at the southwestern margin of the Central Paratethys. The value of the CNHM’s historical collections has been presented through taxonomic revisions and biostratigraphic, paleoenvironmental and paleogeographic study. Methods included the cross-checking of specimens from museum boxes with all available published data, systematic revision of scallops, recording the abundance of each taxon, defining the preservation state of the specimens, measuring the morphometric elements and taking photographs of each specimen. After the conducted revision of 624 specimens, the number of registered taxa in the collections was reduced from 52 to 33, and their stratigraphic distribution has been updated. The species Lissochlamys excisa (Bronn, 1831) has been recorded for the first time at the southwestern part of the Central Paratethys. The southernmost Badenian record of Delectopecten vitreus (Gmelin, 1791) known so far has been described. Six types of pectinid habitats have been distinguished, based on the provided paleontological and lithological data, also estimating the scallops’ abundance in each of them. Bioerosion and encrustation traces on scallops’ shells represent an additional contribution to paleoecological studies. Full article

(This article belongs to the Special Issue Do We Still Need Natural History Collections?)

► Show Figures

Figure 1

24 pages, 2147 KB

Open AccessEditor’s ChoiceArticle

The Interaction between Climate Change and Biodiversity Can Be Assessed from a Material Cycle Perspective

by Ah-Young Kim, Who-Seung Lee and Yowhan Son

Diversity 2024, 16(8), 506; https://doi.org/10.3390/d16080506 - 19 Aug 2024

Cited by 8 | Viewed by 8583

Abstract

This study focused on understanding biodiversity variability in response to climate change as an environmental stressor from a carbon cycle perspective. As the frequency and magnitude of environmental stresses are expected to increase due to rising carbon concentrations, these changes may affect the [...] Read more.

This study focused on understanding biodiversity variability in response to climate change as an environmental stressor from a carbon cycle perspective. As the frequency and magnitude of environmental stresses are expected to increase due to rising carbon concentrations, these changes may affect the variability in biodiversity. However, several studies have argued that conventional methods for biodiversity assessment, primarily based on arithmetic indices utilized in national policies, are inadequate for accurately assessing these interactions among species, abiotic changes, and material cycling. Here, we indicate that environmental stressors that occur at various scales and domains, from macroscopic to microscopic, and their effects on ecosystems are multi-dimensional. Furthermore, environmental stresses not only affect organisms inhabiting these ecosystems but these organisms, in return, influence the carbon cycle through life history changes resulting from these stresses. The results of our review suggest that these processes are sequentially interconnected, forming self-reinforcing feedback loops. Ultimately, an integrated approach is necessary to understand biodiversity variability in complex and open ecosystems. This approach should be capable of comprehending changes in the overall flow by considering ecosystem characteristics. Full article

► Show Figures

Graphical abstract

20 pages, 2440 KB

Open AccessEditor’s ChoiceArticle

Biodiversity Assessment of a Mississippi River Backwater Complex Using eDNA Metabarcoding

by Eric J. Ludwig, Veronica M. Lee, Leah K. Berkman, Aaron D. Geheber and David D. Duvernell

Diversity 2024, 16(8), 495; https://doi.org/10.3390/d16080495 - 14 Aug 2024

Cited by 2 | Viewed by 4422

Abstract

The backwater lowland habitats of large rivers, like the Mississippi River in North America, present complex and often inaccessible environments for traditional capture-based fish biodiversity sampling. Our knowledge of the assemblages of the fishes that occupy such habitats is often incomplete, and this [...] Read more.

The backwater lowland habitats of large rivers, like the Mississippi River in North America, present complex and often inaccessible environments for traditional capture-based fish biodiversity sampling. Our knowledge of the assemblages of the fishes that occupy such habitats is often incomplete, and this can compromise management efforts. We employed environmental DNA (eDNA) metabarcoding methods to sample a Mississippi River bottom wetland system to assess the ichthyofaunal diversity and the assemblage structure across habitat types, and we compared our results with capture-based survey records for the same habitats. We collected water samples in the spring and fall of 2022 from slough, ditch, shallow lake, and bayou habitats that varied in depth, vegetation, seasonal variability, and connectivity to the Mississippi River channel. We detected a diverse array of fish species that included 51 taxa. Nearly all the species previously documented in the habitats were detected using eDNA metabarcoding, and we increased the number of documented species by more than a third. Most of the species were ubiquitous across the range of habitats, but there was also a substantial assemblage structure, with some species exhibiting clear habitat specificity. Fall sampling was limited to the deeper bayou habitats where seasonal variation between the spring and fall was minimal. eDNA metabarcode sampling was demonstrated to be effective at detecting invasive species as well as uncommon species, which included several species of conservation concern. Full article

(This article belongs to the Special Issue Applications of Environmental DNA in Aquatic Ecology and Biodiversity)

► Show Figures

Graphical abstract

16 pages, 15119 KB

Open AccessEditor’s ChoiceArticle

Skin Anatomy, Bone Histology and Taphonomy of a Toarcian (Lower Jurassic) Ichthyosaur (Reptilia: Ichthyopterygia) from Luxembourg, with Implications for Paleobiology

by Ida Bonnevier Wallstedt, Peter Sjövall, Ben Thuy, Randolph G. De La Garza, Mats E. Eriksson and Johan Lindgren

Diversity 2024, 16(8), 492; https://doi.org/10.3390/d16080492 - 12 Aug 2024

Cited by 4 | Viewed by 5442

Abstract

A partial ichthyosaur skeleton from the Toarcian (Lower Jurassic) bituminous shales of the ‘Schistes Carton’ unit of southern Luxembourg is described and illustrated. In addition, associated remnant soft tissues are analyzed using a combination of imaging and molecular techniques. The fossil (MNHNL TV344) [...] Read more.

A partial ichthyosaur skeleton from the Toarcian (Lower Jurassic) bituminous shales of the ‘Schistes Carton’ unit of southern Luxembourg is described and illustrated. In addition, associated remnant soft tissues are analyzed using a combination of imaging and molecular techniques. The fossil (MNHNL TV344) comprises scattered appendicular elements, together with a consecutive series of semi-articulated vertebrae surrounded by extensive soft-tissue remains. We conclude that TV344 represents a skeletally immature individual (possibly of the genus Stenopterygius) and that the soft parts primarily consist of fossilized skin, including the epidermis (with embedded melanophore pigment cells and melanosome organelles) and dermis. Ground sections of dorsal ribs display cortical microstructures reminiscent of lines of arrested growth (LAGs), providing an opportunity for a tentative age determination of the animal at the time of death (>3 years). It is further inferred that the exceptional preservation of TV344 was facilitated by seafloor dysoxia/anoxia with periodical intervals of oxygenation, which triggered phosphatization and the subsequent formation of a carbonate concretion. Full article

(This article belongs to the Special Issue Making New Out of the Old: Recent Biological Advances on Mesozoic Marine Reptiles)

► Show Figures

Figure 1

14 pages, 3282 KB

Open AccessEditor’s ChoiceArticle

Comparative Assessment of Shell Structural, Mechanical, and Elemental Properties in Adult Acorn Barnacles

by Jazmine Shaw, Yeram Kang, Callie Triano, Corin J. Hoppe, Nick Aldred, Rebecca A. Metzler and Gary H. Dickinson

Diversity 2024, 16(8), 482; https://doi.org/10.3390/d16080482 - 8 Aug 2024

Cited by 3 | Viewed by 5198

Abstract

Balanomorph (acorn) barnacles are found throughout the world’s coastal oceans, and their success is dependent on a hard, mineralized, outer shell. Although macro-scale morphology of barnacle shells has been studied extensively, relatively little is known about shell properties at the micron-scale and if [...] Read more.

Balanomorph (acorn) barnacles are found throughout the world’s coastal oceans, and their success is dependent on a hard, mineralized, outer shell. Although macro-scale morphology of barnacle shells has been studied extensively, relatively little is known about shell properties at the micron-scale and if such properties vary among species. We assessed shell structure, mechanics, and composition in seven species of balanomorph barnacles from five genera. Three species, Amphibalanus amphitrite, Amphibalanus improvisus, and Austrominius modestus, were laboratory-reared, enabling direct comparison of shell properties of barnacles grown under the same conditions for the same duration. Four other species, Semibalanus balanoides, Amphibalanus eburneus, Chthamalus stellatus, and Tetraclita rubescens, were field-collected. At the macro- and meso-scales, shell properties varied markedly among species, with differences in the number of shell plates, the presence of canals within the plates, mineralization of the base, and shell plate thickness. At the micron-scale, however, structure was remarkably similar among species. Plates of all species were constructed of irregular micron-scale crystallites, with a broad range of crystallite dimensions observed within the same shell. Similarly, micromechanical properties did not vary among species, regardless of testing orientation. Calcium carbonate was identified as calcite in all species assessed with no other mineral phases present, and calcium content did not vary among species. Hence, despite variation in the overall macro- and meso-scale morphology of barnacles, all appear to be built using the same, evolutionarily conserved, mineralization pathway. Full article

(This article belongs to the Special Issue Diversity in 2024)

► Show Figures

Figure 1

14 pages, 2748 KB

Open AccessEditor’s ChoiceArticle

Understanding Balanophyllia regia Distribution in the Canary Islands: Effects of Environmental Factors and Methodologies for Future Monitoring

by Cataixa López, Fernando Tuya and Sabrina Clemente

Diversity 2024, 16(8), 475; https://doi.org/10.3390/d16080475 - 6 Aug 2024

Cited by 5 | Viewed by 2317

Abstract

The future of marine ecosystems is at risk due to climate change and other human impacts. Specifically, due to ocean warming, some tropical species are expanding their populations while populations of temperate species are in regression, making the establishment of conservation measures imperative [...] Read more.

The future of marine ecosystems is at risk due to climate change and other human impacts. Specifically, due to ocean warming, some tropical species are expanding their populations while populations of temperate species are in regression, making the establishment of conservation measures imperative to maintain local biodiversity. In this study we establish a baseline on the distribution and abundance of the temperate coral Balanophyllia regia from the Canary Islands. We found that the main environmental factors determining B. regia’s distribution and abundance were sea surface temperature and hydrodynamic conditions. Areas under large wave action and colder environments enhanced this warm-temperate species’ development. Since its metabolic performance depends exclusively on the surrounding environment, we also propose a methodology to potentially monitor climate change on coastal habitats through this azooxanthellate calcified coral. Results of a tagging experiment showed that a concentration of 20 mg/mL of calcein during 6 h might be enough to in situ label polyps of B. regia without compromising corallite survival. Long-term monitoring of population abundances and growth rates of B. regia through calcein tagging will allow us to identify alterations in local ecosystems early and focus future conservation investments on the most vulnerable areas with higher ecological and economic value. Full article

(This article belongs to the Topic Technological Innovation to Support Reef Research and Conservation)
(This article belongs to the Section Marine Diversity)

► Show Figures

Figure 1

22 pages, 6248 KB

Open AccessEditor’s ChoiceArticle

DNA Metabarcoding Analysis of Arthropod Diversity in Dust from the Natural History Museum, Vienna

by Pascal Querner, Nikola Szucsich, Bill Landsberger and Peter Brimblecombe

Diversity 2024, 16(8), 476; https://doi.org/10.3390/d16080476 - 6 Aug 2024

Cited by 4 | Viewed by 6342

Abstract

This paper introduces a new method for identifying museum pests through the analysis of DNA present in settled dust. Traditionally, the identification of pests in cultural institutions such as museums and depositories has relied on insect trapping (monitoring). They give good results but [...] Read more.

This paper introduces a new method for identifying museum pests through the analysis of DNA present in settled dust. Traditionally, the identification of pests in cultural institutions such as museums and depositories has relied on insect trapping (monitoring). They give good results but need time (minimum spring until summer of one year for a complete survey) and face challenges related to the identification of small, rare, or damaged species. Our study presents a non-invasive approach that utilizes metabarcoding analysis of dust samples to identify pests and other arthropods at the species level. We collected dust samples with a handheld vacuum cleaner in summer 2023 from the six different floors of the Natural History Museum in Vienna and compared the results with the insect monitoring. We found over 359 different species of arthropods in the museum and could show how the diversity increases with the elevation of the building floor. This method could be used for rapid and cost-effective screening of pests before monitoring. But the interpretation of results is sometimes difficult (for Lepismatidae, for example), and it cannot replace a continuous monitoring of pests with traps. This investigation might present the highest indoor animal biodiversity ever found in a single building. Full article

(This article belongs to the Special Issue DNA Barcodes for Evolution and Biodiversity—2nd Edition)

► Show Figures

Figure 1

12 pages, 2058 KB

Open AccessEditor’s ChoiceArticle

Exploring Biodiversity and Food Webs in Sulfur Cave in the Vromoner Canyon on the Greek–Albanian Border

by Serban M. Sarbu, Traian Brad, Raluca I. Băncilă and Andrei Ştefan

Diversity 2024, 16(8), 477; https://doi.org/10.3390/d16080477 - 6 Aug 2024

Cited by 7 | Viewed by 10107

Abstract

Sulfidic caves support diverse and abundant subterranean communities, including numerous endemic species and complex food webs, though the full extent of species diversity and resource utilization in these ecosystems remains largely unexplored. This paper presents the results of biological surveys conducted from 2023 [...] Read more.

Sulfidic caves support diverse and abundant subterranean communities, including numerous endemic species and complex food webs, though the full extent of species diversity and resource utilization in these ecosystems remains largely unexplored. This paper presents the results of biological surveys conducted from 2023 to 2024 in Sulfur Cave, located in the Vromoner Canyon on the Greek–Albanian border, focusing on microbial, vertebrate, and invertebrate communities and investigating the structure of the subterranean food web. The microbial communities from the different biofilms are dominated by chemosynthetic sulfur-oxidizing microorganisms, specifically filamentous bacteria such as Thiotrix and Beggiatoa. Two species of fish, an eel (Anguilla sp.) and a Cyprinid (Alburnoides sp.), and six bat species from three families (Rhinolophidae, Miniopteridae, and Vespertilionidae) were documented. The invertebrate fauna includes five aquatic species, 25 terrestrial species, and four amphibiotic species. Among these, eight species are endemic, and seven species exhibit troglomorphic traits. Stable isotope analysis showed light carbon and nitrogen values for the terrestrial and aquatic invertebrates, suggesting that subterranean communities rely on food produced in situ by chemoautotrophic microorganisms. Our results identified cave areas of significant biological relevance and provided reference data to inform conservation actions aimed at preserving the biodiversity of this sulfidic cave. Full article

(This article belongs to the Special Issue Recent Advances in the Diversity and Taxonomy of Subterranean Arthropods)

► Show Figures

Figure 1

28 pages, 5938 KB

Open AccessEditor’s ChoiceArticle

Prioritising Ex Situ Conservation for Malagasy Mammal Species in Line with IUCN’s ‘One Plan Approach to Conservation’

by Anna Rose, Marie Tuchtfeldt, Robin Lammers, Johanna Rode-White, Matthias Markolf, Theo Pagel, Dennis Rödder and Thomas Ziegler

Diversity 2024, 16(8), 456; https://doi.org/10.3390/d16080456 - 1 Aug 2024

Cited by 3 | Viewed by 4982

Abstract

Madagascar, as one of the global biodiversity hotspots, hosts numerous unique terrestrial mammal species that need urgent protection. To identify priority species for conservation, an updated list of terrestrial Malagasy mammal species was compiled, including their threat status, distribution, endemism level, Convention on [...] Read more.

Madagascar, as one of the global biodiversity hotspots, hosts numerous unique terrestrial mammal species that need urgent protection. To identify priority species for conservation, an updated list of terrestrial Malagasy mammal species was compiled, including their threat status, distribution, endemism level, Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) listing, and Evolutionarily Distinct and Globally Endangered (EDGE) score. An overview of these species kept in zoos worldwide was created using the Zoological Information Management System and Zootierliste to assess ex situ conservation efforts. Nearly 60% of the 212 native terrestrial mammal species are threatened with extinction, with 18% being regional endemics, 39% microendemics, and 42% endemics. The majority of these species (92%) occur within protected areas. About half of Madagascar’s mammals are listed under CITES, and less than half have an EDGE score. Only 34 species are kept in zoos globally, with 26 Red-Listed as threatened. Nine out of seventeen families are not represented in zoos. A total of 1545 institutions, primarily in Europe and North America, keep Malagasy mammal species, with successful reproduction reported for 28 species in the last 12 months, 23 of them listed as threatened on the IUCN Red List. To maximize conservation, we recommend reallocating resources towards priority species and implementing concerted ex situ and in situ actions as proposed by the IUCN’s One Plan Approach. Full article

(This article belongs to the Special Issue Conflict and Coexistence Between Humans and Wildlife)

► Show Figures

Figure 1

19 pages, 6977 KB

Open AccessEditor’s ChoiceArticle

Population Biology of the Non-Indigenous Rayed Pearl Oyster (Pinctada radiata) in the South Evoikos Gulf, Greece

by Dimitris Pafras, Alexandros Theocharis, Gerasimos Kondylatos, Alexis Conides and Dimitris Klaoudatos

Diversity 2024, 16(8), 460; https://doi.org/10.3390/d16080460 - 1 Aug 2024

Cited by 10 | Viewed by 4705

Abstract

The Atlantic pearl oyster Pinctada radiata (Leach, 1814), the first documented Lessepsian bivalve species to enter the Mediterranean basin, is present in various coastal areas in Greece, and constitutes, almost exclusively, a domestic commercial bivalve resource. The present study aimed to contribute to [...] Read more.

The Atlantic pearl oyster Pinctada radiata (Leach, 1814), the first documented Lessepsian bivalve species to enter the Mediterranean basin, is present in various coastal areas in Greece, and constitutes, almost exclusively, a domestic commercial bivalve resource. The present study aimed to contribute to the limited information available on P. radiata population structure and dynamics in Hellenic waters, especially following the recent enforcement of legislation for regulation of its fishery. A total of 703 individuals were collected using scuba diving from the South Evoikos Gulf. The male-to-female ratio (1:1.70) significantly departed from 1:1. A higher probability for female prevalence was exhibited for shell heights over 50.77 mm. Significant differences were exhibited in the shell height–total weight relationship between the sexes. The fourth-year class was the dominant cohort, comprising 50.09% of the population, out of the seven age classes identified. Asymptotic length was estimated at 109.1 mm and growth index at 3.35, respectively. Longevity was estimated at 15.7 years, with natural mortality (M) at 0.39 and total mortality (Z) at 0.76. The probability of capture (LC₅₀) was estimated at 50.72 mm at 2.8 years. Biological reference points F_MSY and E_MSY were higher than the fishing mortality and current exploitation rate, respectively, indicating the potential for further population exploitation. Full article

► Show Figures

Graphical abstract

21 pages, 4322 KB

Open AccessEditor’s ChoiceArticle

Lake Champlain Zooplankton Community Dynamics Following an Extreme Flood Event

by Timothy Mihuc, Erin Hayes-Pontius, Marshall Arnwine, Zachary Cutter and Luke Myers

Diversity 2024, 16(8), 451; https://doi.org/10.3390/d16080451 - 31 Jul 2024

Cited by 4 | Viewed by 2467

Abstract

Lake Champlain, the sixth largest freshwater lake in the U.S., is a deep thermally stratified temperate zone lake system. Recently, flood events have impacted the Northeastern U.S. more frequently than in past decades, resulting in increased turbidity and other impacts in northern temperate [...] Read more.

Lake Champlain, the sixth largest freshwater lake in the U.S., is a deep thermally stratified temperate zone lake system. Recently, flood events have impacted the Northeastern U.S. more frequently than in past decades, resulting in increased turbidity and other impacts in northern temperate lakes. This study represents an unprecedented analysis of the impacts of major spring and summer flooding in 2011 on Lake Champlain zooplankton communities. Few studies exist on flood impacts on lake systems, especially in natural un-impounded lakes. Our results illustrate the impacts of large-scale flooding on planktonic communities in deep stratified temperate lakes and the differential responses among species based on autecological traits. Community responses include flood-adapted increase during the flood event (Ceriodaphnia reticulata and Eubosmina coregoni), a flood-intolerant decline (Asplanchna spp. and Keratella cochlearis) or a delayed flood intolerance (Daphnia retrocurva, Mesocyclops edax, and Polyarthra spp.). Our results suggest that large, temperate lakes such as Lake Champlain will experience community shifts in zooplankton composition during future extreme flood events associated with climate change-related weather patterns in the Northeastern U.S. Full article

(This article belongs to the Special Issue Diversity and Ecology of Zooplankton in Freshwater Subhabitats: Second Edition)

► Show Figures

Graphical abstract

9 pages, 4297 KB

Open AccessEditor’s ChoiceArticle

Lack of Data or Lack of Weasels? The Likely Silent Extinction of Weasel Mustela nivalis (Carnivora: Mustelidae) in Spain

by Ana B. Llorca, Francisco S. Tortosa and José Guerrero-Casado

Diversity 2024, 16(8), 446; https://doi.org/10.3390/d16080446 - 29 Jul 2024

Cited by 8 | Viewed by 4507

Abstract

Records from online biodiversity databases (including citizen science data) can play a crucial role in enhancing scientific knowledge about the abundance, distribution, and population trends of poorly studied species which are usually not properly monitored. This study aims to demonstrate the utility of [...] Read more.

Records from online biodiversity databases (including citizen science data) can play a crucial role in enhancing scientific knowledge about the abundance, distribution, and population trends of poorly studied species which are usually not properly monitored. This study aims to demonstrate the utility of data hosted in GBIF in detecting the likely decline of species common and widely distributed in the past, but whose conservation status is now uncertain, such as the weasel (Mustela nivalis) in Spain. To address this, we analyzed data on its presence in Spain from 2008 to 2022 available on GBIF.org, and compared it with the distribution data from the Atlas of Mammals of Spain published in 2007. The results indicate that: (i) data from GBIF.org reveal a moderate decline (negative trend) in the weasel population in Spain during the study period; (ii) the species has been recorded in a limited number of 10 × 10 km UTM-squares (Universal Transverse Mercator) within its distribution range as defined by the 2007 atlas; and (iii) there are large areas of Spain in which the species has not been detected in recent years. These findings highlight the concerning conservation status of this carnivorous species and underscore the value of data from open access platforms such as GBIF in identifying potential silent extinctions. Full article

(This article belongs to the Collection Feature Papers in Animal Diversity)

► Show Figures

Graphical abstract

17 pages, 2709 KB

Open AccessEditor’s ChoiceArticle

Decoding Anotylus (Thomson 1859) Beetle Diversity: DNA and External Morphology Match in Área de Conservaciόn Guanacaste, Costa Rica

by K. Dante Underwood, Robert Puschendorf, David T. Bilton, Winnie Hallwachs, Daniel H. Janzen and M. Alex Smith

Diversity 2024, 16(8), 441; https://doi.org/10.3390/d16080441 - 25 Jul 2024

Cited by 3 | Viewed by 4715

Abstract

Taxonomy underpins biological research because names are needed for comparative analysis, conservation status, and public communication. Despite this, many species remain undescribed and are therefore vulnerable and unprotected, particularly in the tropics. Neotropical Staphylinidae beetles (Coleoptera) are among the insect groups most likely [...] Read more.

Taxonomy underpins biological research because names are needed for comparative analysis, conservation status, and public communication. Despite this, many species remain undescribed and are therefore vulnerable and unprotected, particularly in the tropics. Neotropical Staphylinidae beetles (Coleoptera) are among the insect groups most likely to contain significant unknown and/or cryptic diversity. Here we used an integrative taxonomic framework to conduct a preliminary review of one particularly diverse genus of Staphylinidae (Anotylus) in Área de Conservaciόn Guanacaste, northwestern Costa Rica. We began by DNA barcoding novel collections and using Barcode Index Numbers (BINs) as an estimate of taxonomic diversity; we found 18 provisional new species. We augmented this genetic analysis with a morphometric analysis of adult morphological characters and found that we could differentiate most provisional species by external morphology as well as by elevation of collection. All the most abundant species could be differentiated from each other by differences in body size. One BIN included slight (~1%) genetic variation that corresponded with some morphological differentiation suggesting the existence of two species within a DNA BIN. Our results support the efficacy of DNA barcoding collections of tropical insects as an effective biodiversity estimator, one that can be used as a primer for integrative taxonomic studies using BINs as species hypotheses. Full article

(This article belongs to the Special Issue Diversity, Distribution and Zoogeography of Coleoptera)

► Show Figures

Figure 1

16 pages, 2679 KB

Open AccessEditor’s ChoiceArticle

Selecting Monitoring Methods for Endangered Trout Populations

by Paolo Casula, Francesco Palmas, Francesco Curreli and Andrea Sabatini

Diversity 2024, 16(8), 442; https://doi.org/10.3390/d16080442 - 25 Jul 2024

Viewed by 2594

Abstract

Endangered trout populations can be monitored with a variety of methods, the selection of which should consider social constraints and environmental variables known to affect method effectiveness. Here, we confront the effectiveness of four monitoring methods (removal with electrofishing, ELE; underwater camera survey, [...] Read more.

Endangered trout populations can be monitored with a variety of methods, the selection of which should consider social constraints and environmental variables known to affect method effectiveness. Here, we confront the effectiveness of four monitoring methods (removal with electrofishing, ELE; underwater camera survey, UCS; streamside visual survey, SVS; visual surveys with angling, VSA) to estimate the relative abundance of three populations of the endangered Mediterranean brown trout. The trout counts obtained via different methods were well correlated (r = 0.65–0.72), providing a coherent description of the relative pool abundance across the methods. However, the methods were differently affected by environmental variables, depending on the age classes of trout. Specifically, the adult and subadult counts provided by ELE and VSA were negatively and positively affected by the maximum pool depth, respectively; adult and subadult counts of VSA and the SVS were positively affected by pool area; the juvenile counts provided by the UCS were positively affected by pool shade and negatively affected by water turbidity; juvenile counts provided by VSA were positively affected by shade. Variables such as pool depth, area, shading, water turbidity and proportion of age classes can be hardly controlled in monitoring programs, and their bias could be modelled. Different sampling methods provided similar information about relative abundance and appeared equivalent. While ELE could be selected to collect samples and biometric data, monitoring relative abundance with the UCS, VSA, and SVS appears more suited and can also involve citizen scientists. Full article

(This article belongs to the Section Biodiversity Conservation)

► Show Figures

Figure 1

14 pages, 1232 KB

Open AccessEditor’s ChoiceArticle

Diversity and Distribution of Monocot Understory Herbs during Tropical Forest Succession in Northeastern Costa Rica

by Jennifer W. C. Sun, Robin L. Chazdon and Philip W. Rundel

Diversity 2024, 16(8), 439; https://doi.org/10.3390/d16080439 - 24 Jul 2024

Cited by 2 | Viewed by 4121

Abstract

Broad-leaved monocot herbs form one of the most common and diverse growth forms of Neotropical plants. Their significance and frequency of occurrence is particularly notable in the understories of tropical rainforests, where they form a dominant element. We assessed and quantified changes in [...] Read more.

Broad-leaved monocot herbs form one of the most common and diverse growth forms of Neotropical plants. Their significance and frequency of occurrence is particularly notable in the understories of tropical rainforests, where they form a dominant element. We assessed and quantified changes in the cover and diversity of understory herb communities in a chronosequence of 1 ha permanent plots established as part of a multidisciplinary study on tropical forest regeneration in the Atlantic lowlands of northeastern Costa Rica. Sampled were two young stands cleared 12 years ago, two secondary forests with 21 and 39 of years of recovery since clearance, and two stands in old-growth primary forest. Changes in species composition during succession were assessed using Chao’s Jaccard similarity index. Observed species richness ranged from 15 to 26 species in individual plots, with the greatest number of species in the 21-year intermediate-age and fewest in the young 12-year plots. Herb species sampled represented 6 families, 15 genera, and 39 species, with the Araceae contributing the largest number of species. Ten species were sampled in all six stands, while fourteen species were found exclusively in one plot. Herb density (ramets m⁻²) showed a hump-shade trend, with peak density in the intermediate stands and a lower level in mature and young secondary forests. Mean herb cover in 25 m² quadrats ranged from 2.0% (young stand) to 22.7% (intermediate-age stand) and differed significantly both among stand types and among sites. Both observed and estimated species richness increased along the chronosequence as a whole, with the highest number of species in primary forest, although only slightly higher than in intermediate-age stands. Over half of the species exhibited some degree of clonal growth, with the extent of clonal spread varying among species and forest stands. Although we did not find a clear pattern between clonality and forest age, we observed a greater number of clonal patches in secondary over primary forest stands. Full article

(This article belongs to the Special Issue Plant Diversity Hotspots in the 2020s)

► Show Figures

Figure 1

20 pages, 1738 KB

Open AccessEditor’s ChoiceReview

A Fossil Record of Spores before Sporophytes

by Paul K. Strother and Wilson A. Taylor

Diversity 2024, 16(7), 428; https://doi.org/10.3390/d16070428 - 22 Jul 2024

Cited by 9 | Viewed by 5220

Abstract

Because their resistant, sporopolleninous walls preserve a record of morphogenetic change during spore formation, fossil cryptospores provide a direct physical record of the evolution of sporogenesis during the algal–plant transition. That transition itself is a story of the evolution of development—it is not [...] Read more.

Because their resistant, sporopolleninous walls preserve a record of morphogenetic change during spore formation, fossil cryptospores provide a direct physical record of the evolution of sporogenesis during the algal–plant transition. That transition itself is a story of the evolution of development—it is not about phylogeny. Here, we review the fossil record of terrestrially derived spore/cryptospore assemblages and attempt to place these microfossils in their evolutionary context with respect to the origin of complex multicellularity in plants. Cambrian cryptospores show features related to karyokinesis seen in extant charophytes, but they also possess ultrastructure similar to that seen in liverworts today. Dyadospora, a cryptospore dyad recovered from sporangia of Devonian embryophytes, first occurs in the earliest Ordovician. Tetrahedraletes, a likely precursor to the trilete spore, first occurs in the Middle Ordovician. These fossils correspond to evolutionary novelties that were acquired during a period of genome assembly prior to the existence of upright, axial sporophytes. The cryptospore/spore fossil record provides a temporal scaffold for the acquisition of novel characters relating to the evolution of plant sporogenesis during the Cambrian–Silurian interval. Full article

(This article belongs to the Special Issue Phylogeny, Ages, Molecules and Fossils of Land Plants)

► Show Figures

Figure 1

26 pages, 13417 KB

Open AccessEditor’s ChoiceArticle

Agricultural Landscapes: A Pattern-Process-Design Approach to Enhance Their Ecological Quality and Ecosystem Services through Agroforestry

by Ilda Vagge, Nicolò Sgalippa and Gemma Chiaffarelli

Diversity 2024, 16(7), 431; https://doi.org/10.3390/d16070431 - 22 Jul 2024

Cited by 13 | Viewed by 4985

Abstract

Agricultural landscapes are currently suffering and generating severe ecological issues. This is especially true in intensively managed alluvial contexts, where biodiversity is declining and ecosystem services (ES) delivery capacity is being depleted. The aim of our study is to set up and test [...] Read more.

Agricultural landscapes are currently suffering and generating severe ecological issues. This is especially true in intensively managed alluvial contexts, where biodiversity is declining and ecosystem services (ES) delivery capacity is being depleted. The aim of our study is to set up and test a synthetic analytical methodology that allows us to: understand current agricultural landscape ecological quality drivers (structural and functional traits); identify context-specific strategies to correct current negative trends (landscape ecology design approach); and assess the changes in the landscape ecological behavior provided by design scenarios. The applied methodology is low-cost and low-time-demanding and is based on multi-scale landscape ecology and land-use-based ES assessment; it implements a pattern-process-design approach. Analyses are applied to four northern Italian alluvial agricultural landscape systems. We specifically address landscape biodiversity support functions (landscape ecology indicators) and landscape multifunctionality (ES spatial assessment). We test the agroforestry approach (landscape feature insertions and crop diversification) as a key strategy to enhance ecological quality and ES, and we account for its contributions to context-specific design scenarios. This analytical toolkit might serve for future applications on similar case studies. Full article

► Show Figures

Figure 1

23 pages, 4554 KB

Open AccessEditor’s ChoiceArticle

Rare Earth Elements Distribution and Bacteriome to Assess and Characterize the Soil Landscapes of Old Olive Orchards

by Angela Roccotelli, Simone Tommasini, Maria Teresa Ceccherini, Luca Calamai, Mattia Ferrari, Matthias Ghiotto, Roberto Riccio, Lisa Bonciani, Giacomo Pietramellara, Sandro Moretti and Samuel Pelacani

Diversity 2024, 16(7), 427; https://doi.org/10.3390/d16070427 - 21 Jul 2024

Cited by 2 | Viewed by 3547

Abstract

The presence of the olive tree in Tuscany, Italy, in its forms that have survived to the present day as an essential component of the landscape dates back many centuries. Global change is now threatening it. Therefore, it is important to find markers [...] Read more.

The presence of the olive tree in Tuscany, Italy, in its forms that have survived to the present day as an essential component of the landscape dates back many centuries. Global change is now threatening it. Therefore, it is important to find markers to enhance the olive tree environment in terms of its resilience. The aim of the research was to investigate the composition of soil bacteriomes in contrasting geochemical environments using a geochemistry approach based on the behavior of the REEs, inherited from parent rock material. Bacteriome assemblages and REE content were analyzed in 48 topsoils developed in six geochemical Tuscan environments. Combined geochemical, geoinformatic, and bioinformatic techniques highlighted the existence of four bacteriome assemblages depending on Light-REEs. Further results showed that the soil bioavailable fraction of REEs was related to parent rock materials, pH, and bacteriome composition. The most abundant bacteria were Microlunatus in graded fluvio-lacustrine soils, Gaiella in graded arenaceous soils, Bradyrizhobium in pyroclastic soils, and Rubrobacter in soils on gentle slopes of calcareous and carbonatic lithologies. This research represents a starting point to define new indicators able to assess the resilience of the olive trees in the Mediterranean landscape and characterize the territory of extra virgin olive oils. Full article

► Show Figures

Graphical abstract

27 pages, 1184 KB

Open AccessEditor’s ChoiceReview

Relationships Among the Bryophytes and Vascular Plants: A Case Study in Deep-Time Reconstruction

by Yin-Long Qiu and Brent D. Mishler

Diversity 2024, 16(7), 426; https://doi.org/10.3390/d16070426 - 21 Jul 2024

Cited by 8 | Viewed by 8942

Abstract

Relationships of the three bryophyte lineages (liverworts, mosses, and hornworts) to vascular plants is a pivotal question in the study of the origin and evolution of land plants. In recent decades, this question has been subjected to intense phylogenetic analyses using morphological characters, [...] Read more.

Relationships of the three bryophyte lineages (liverworts, mosses, and hornworts) to vascular plants is a pivotal question in the study of the origin and evolution of land plants. In recent decades, this question has been subjected to intense phylogenetic analyses using morphological characters, multigene DNA sequences, and genome structural characters. A tentative consensus, reached ten years ago, suggested that bryophytes are a paraphyletic group, with liverworts being sister to all other land plants and hornworts being sister to vascular plants. However, several more recent nuclear phylogenomic studies have concluded that bryophytes represent a monophyletic group that is sister to vascular plants. A discussion is presented here on strengths and weaknesses of different types of characters (morphological traits, nucleotide sequences, and genome structural arrangements) and their suitability for resolving deep phylogenetic relationships. Moreover, several criteria for credible phylogenetic reconstruction are proposed. Strong statistical support for reconstructed relationships should be derived from high-quality, independent characters selected for suitability to the particular question being addressed. The relationships inferred in a study should be congruent with those from as many other lines of phylogenetic evidence as possible. Any incongruities should be explicable by well-understood biological mechanisms. It is concluded that the relationships of the three bryophyte lineages to vascular plants should currently be viewed as unresolved. This is a difficult phylogenetic problem; the land plants underwent a rapid radiation a long time ago. Yet, further exploration of analytical methods and careful choice of characters should lead to the eventual elucidation of diversification patterns among early land plants. Full article

(This article belongs to the Special Issue Phylogeny, Ages, Molecules and Fossils of Land Plants)

► Show Figures

Figure 1

Journal Menu

Journal Browser

Editor’s Choice Articles

Further Information

Guidelines

MDPI Initiatives

Follow MDPI