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Volume 13
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Plants, Volume 13, Issue 18 (September-2 2024) – 20 articles

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15 pages, 11549 KiB  
Article
Automatic Disease Detection from Strawberry Leaf Based on Improved YOLOv8
by Yuelong He, Yunfeng Peng, Chuyong Wei, Yuda Zheng, Changcai Yang and Tengyue Zou
Plants 2024, 13(18), 2556; https://doi.org/10.3390/plants13182556 (registering DOI) - 11 Sep 2024
Abstract
Strawberries are susceptible to various diseases during their growth, and leaves may show signs of diseases as a response. Given that these diseases generate yield loss and compromise the quality of strawberries, timely detection is imperative. To automatically identify diseases in strawberry leaves, [...] Read more.
Strawberries are susceptible to various diseases during their growth, and leaves may show signs of diseases as a response. Given that these diseases generate yield loss and compromise the quality of strawberries, timely detection is imperative. To automatically identify diseases in strawberry leaves, a KTD-YOLOv8 model is introduced to enhance both accuracy and speed. The KernelWarehouse convolution is employed to replace the traditional component in the backbone of the YOLOv8 to reduce the computational complexity. In addition, the Triplet Attention mechanism is added to fully extract and fuse multi-scale features. Furthermore, a parameter-sharing diverse branch block (DBB) sharing head is constructed to improve the model’s target processing ability at different spatial scales and increase its accuracy without adding too much calculation. The experimental results show that, compared with the original YOLOv8, the proposed KTD-YOLOv8 increases the average accuracy by 2.8% and reduces the floating-point calculation by 38.5%. It provides a new option to guide the intelligent plant monitoring system and precision pesticide spraying system during the growth of strawberry plants. Full article
(This article belongs to the Section Plant Modeling)
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18 pages, 3637 KiB  
Article
Diverging Elevational Patterns of Tree vs. Epiphyte Species Density, Beta Diversity, and Biomass in a Tropical Dry Forest
by Florian A. Werner and Jürgen Homeier
Plants 2024, 13(18), 2555; https://doi.org/10.3390/plants13182555 (registering DOI) - 11 Sep 2024
Abstract
There is evidence to suggest that vascular epiphytes experience low competition for resources (light, water, and nutrients) compared to terrestrial plants. We tested the hypothesis that low resource competition may lead to higher nestedness among vascular epiphyte assemblages compared to trees. We studied [...] Read more.
There is evidence to suggest that vascular epiphytes experience low competition for resources (light, water, and nutrients) compared to terrestrial plants. We tested the hypothesis that low resource competition may lead to higher nestedness among vascular epiphyte assemblages compared to trees. We studied the species composition and biomass of epiphytes and trees along an elevation gradient in a tropical dry forest in SW Ecuador. Both life-forms were inventoried on 25 plots of 400 m2 across five elevation levels (550–1250 m). Tree species density and total species richness increased with elevation, whereas basal area and biomass did not show significant trends. Epiphyte species density and richness both increased strongly with elevation, in parallel to biomass. Plot-level compositional changes were similarly strong for both life-forms. We attribute elevational increases in the species richness of trees and epiphytes to increasing humidity, i.e., more mesic growth conditions. We attribute the more pronounced elevational increase in epiphyte biomass, species density, and richness—the latter coupled with a higher degree of nestedness—to the greater moisture dependency of epiphytes and relatively low direct competition for resources. Our study provides a first comparison of elevational trends in epiphyte and tree diversity and biomass for a tropical dry forest. Full article
(This article belongs to the Special Issue Epiphytic Plants: Perspective on Their Diversity, Distribution, Systematics and Conservation in the Changing Environment)
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5 pages, 794 KiB  
Communication
Genomic Sequence of a Czech Isolate of Erysimum Latent Virus from Sisymbrium altissimum
by Karima Ben Mansour, Josef Špak, Petr Komínek, Miloslav Zouhar, Pavel Ryšánek and Adrian J. Gibbs
Plants 2024, 13(18), 2554; https://doi.org/10.3390/plants13182554 - 11 Sep 2024
Abstract
The Erysimum latent virus (ELV), a tymovirus, was first isolated from several wild and cultivated brassicas in Germany. Its virions were shown to be serologically distinct from those of the turnip yellow mosaic virus (TYMV), which is also found in wild and cultivated [...] Read more.
The Erysimum latent virus (ELV), a tymovirus, was first isolated from several wild and cultivated brassicas in Germany. Its virions were shown to be serologically distinct from those of the turnip yellow mosaic virus (TYMV), which is also found in wild and cultivated plants in several European countries but also in other parts of the world. TYMV and ELV were among the first plant viruses to have had their genomes sequenced, and when other tymovirus genomes were sequenced, it was found that, in phylogenies, ELV is probably the basal outlier to all other tymoviruses. Here, we report the near-complete genomic sequence of another isolate of ELV from Czechia. This isolate was found in 1990 in Sisymbrium altissimum plants showing mosaic symptoms. It was detected using ELISA tests and electron microscopy. We have now sequenced the full coding sequence of this isolate using contemporary high throughput methods and found that the German and Czech isolates of ELV are closely related and are of the same virus species. Full article
(This article belongs to the Special Issue Plant Viruses, Viroids and Phytoplasmas: Insight into Evolutionary, Pathogenicity, and Epidemiology Studies)
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22 pages, 7864 KiB  
Article
A Plant Strategy: Irrigation, Nitrogen Fertilization, and Climatic Conditions Regulated the Carbon Allocation and Yield of Oilseed Flax in Semi-Arid Area
by Haidi Wang, Bangqing Zhao, Yuhong Gao, Bin Yan, Bing Wu, Zhengjun Cui, Yifan Wang, Ming Wen and Xingkang Ma
Plants 2024, 13(18), 2553; https://doi.org/10.3390/plants13182553 - 11 Sep 2024
Abstract
The injudicious use of water and fertilizer to maximize crop yield not only leads to environmental pollution, but also causes enormous economic losses. For this reason, we investigated the effect of nitrogen (N) (N0 (0), N60 (60 kg ha−1), and N120 [...] Read more.
The injudicious use of water and fertilizer to maximize crop yield not only leads to environmental pollution, but also causes enormous economic losses. For this reason, we investigated the effect of nitrogen (N) (N0 (0), N60 (60 kg ha−1), and N120 (120 kg ha−1)) at different irrigation levels (I0 (0), I1200 (budding 600 m3 ha−1 + kernel 600 m3 ha−1), and I1800 (budding 900 m3 ha−1 + kernel 900 m3 ha−1)) on oilseed flax in the Loess Plateau of China in 2019 and 2020. The objective was to establish appropriate irrigation and fertilizer management strategies that enhance the grain yield (GY) of oilseed flax and maximize water and N productivity. The results demonstrated that irrigation and N application and their coupling effects promoted dry matter accumulation (DMA) and non-structural carbohydrate (NSC) synthesis, and increased the GY of oilseed flax. The contents of NSC in various organs of flax were closely related to grain yield and yield components. Higher NSC in stems was conducive to increased sink capacity (effective capsule number per plant (EC) and thousand kernel weight (TKW)), and the coupling of irrigation and N affected GY by promoting NSC synthesis. Higher GY was obtained by the interaction of irrigation and N fertilizer, with the increase rate ranging from 15.84% to 35.40%. Additionally, in the increased yield of oilseed flax, 39.70–78.06%, 14.49–54.11%, and −10.6–24.93% were contributed by the application of irrigation and nitrogen and the interaction of irrigation and nitrogen (I × N), respectively. Irrigation was the main factor for increasing the GY of oilseed flax. In addition, different climatic conditions changed the contribution of irrigation and N and their interaction to yield increase in oilseed flax. Drought and low temperature induced soluble sugar (SS) and starch (ST) synthesis to resist an unfavorable environment, respectively. The structural equation model showed that the key factors to increasing the GY of oilseed flax by irrigation and nitrogen fertilization were the differential increases in DMA, EC, and TKW. The increases in EC and TKW were attributed to the promotion of DMA and NSC synthesis in oilseed flax organs by irrigation, nitrogen fertilization, and their coupling effects. The I1200N60 treatment obtained higher water use efficiency (WUE) and N partial factor productivity (NPFP) due to lower actual evapotranspiration (ETa) and lower N application rate. Therefore, the strategy of 1200 m3 ha−1 irrigation and 60 kg ha−1 N application is recommended for oilseed flax in semi-arid and similar areas to achieve high grain yield and efficient use of resources. Full article
(This article belongs to the Special Issue Water and Nitrogen Management in the Soil–Crop System (3rd Edition))
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13 pages, 4746 KiB  
Article
CaZingipain2 Acts Positively in Pepper (Capsicum annuum L.) Immunity against R. solanacearum
by Ruijie Wu, Zhen Wu, Yalin Qing, Chenfeng Duan, Yiling Guo, Xujing Zhang, Ronghua Huang, Shuilin He and Ailian Qiu
Plants 2024, 13(18), 2552; https://doi.org/10.3390/plants13182552 - 11 Sep 2024
Abstract
Bacterial wilt caused by Ralstonia solanacearum is one of the most important diseases in solanaceous plants, including peppers. It generally tends to be more serious under warm−temperature and moist (WM) conditions than at moist room−temperature (RM) conditions. Although immunity mechanisms at room temperature [...] Read more.
Bacterial wilt caused by Ralstonia solanacearum is one of the most important diseases in solanaceous plants, including peppers. It generally tends to be more serious under warm−temperature and moist (WM) conditions than at moist room−temperature (RM) conditions. Although immunity mechanisms at room temperature have been intensively studied, the mechanisms underlying WM conditions remain poorly understood. Herein, the pepper cysteine protease CaZingipain2 was expressed and functionally characterized in pepper immunity against R. solanacearum at WM conditions and at room temperature. The results showed that CaZingipain2 localized to the nucleus and was upregulated at the transcript level in pepper plants upon R. solanacearum infection under WM conditions (RSWM). Virus−induced gene silencing of CaZingipain2 significantly increased the susceptibility of pepper plants to RSWM, and was coupled with the downregulation of CaPRP1 and CaMgst3, which are specifically related to pepper immunity against RSWM, according to our previous studies, while its overexpression significantly reduced the susceptibility of N. benethamiana plants to RSWM compared to that of wild−type plants. In addition, our data showed that CaZingipain2 also acts positively in pepper immunity against R. solanacearum infection at room temperature by upregulating the SA− and JA−responsive PR genes, including CaNPR1 and CaDEF1. All these results indicate that CaZingipain2 improves pepper immunity against R. solanacearum under WM conditions and at room temperature by regulating different PR genes. Full article
(This article belongs to the Special Issue Vegetable Crops Disease Resistance Mechanism)
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11 pages, 281 KiB  
Article
The Potential of Helichsryum splendidum (Thunb.) Less. for the Restoration of Sites Polluted with Coal Fly Ash
by Alexis Munyengabe, Ledwaba Samuel Kamogelo, Titus Yeliku-ang Ngmenzuma and Maria Fezile Banda
Plants 2024, 13(18), 2551; https://doi.org/10.3390/plants13182551 - 11 Sep 2024
Abstract
The disposal of coal fly ash (CFA) generated from coal-fired power stations has serious impact on the ecosystem, by converting large pieces of land to barren ash dams with the potential to contaminate groundwater, surface water, air and soil. The aim of this [...] Read more.
The disposal of coal fly ash (CFA) generated from coal-fired power stations has serious impact on the ecosystem, by converting large pieces of land to barren ash dams with the potential to contaminate groundwater, surface water, air and soil. The aim of this study was to clarify the potential of phytoremediation using Helichrysum splendidum (Thunb.) Less. in areas polluted by CFA through conduction of pot trial experiments for 14 weeks. Plants of the same age were cultivated in CFA to assess their growth, photosynthetic rate and tolerance towards metal toxicity. This study revealed that the CFA was moderately polluted with heavy metals, and a lower photosynthetic rate was recorded for the CFA plants in comparison to the controls (plants grown in soil). Although the CO2 assimilation rate was lower for the CFA plants, increased growth was recorded for all the plants tested. Inductively coupled plasma mass spectrometry (ICP-MS) was used to quantify the amount of trace elements in samples and parameters including translocation factor (TF) and bioconcentration factor (BCF) were used to evaluate the phytoremediation potential of H. splendidum (Thunb.) Less. The results revealed that higher concentrations of Cd, Co, Cr, Cu, Mn and Pb were accumulated in the roots, while As, Ni and Zn were found in the shoots. Elements including As, Cr and Zn reported TF values above 1, indicating the plants’ phytoextraction potential. The BCF values for As, Cu and Zn were 1.22, 1.19 and 1.03, indicating effectiveness in the phytostabilization processes. A removal rate efficiency ranging from 18.0 to 56.7% was recorded confirming that, H. splendidum (Thunb.) Less. can be employed for restoration of CFA dams. Full article
(This article belongs to the Topic Effect of Heavy Metals on Plants, 2nd Volume)
18 pages, 12284 KiB  
Article
Defense Responses Induced by Viral Movement Protein and Its Nuclear Localization Modulate Virus Cell-to-Cell Transport
by Anastasia K. Atabekova, Ekaterina A. Lazareva, Alexander A. Lezzhov, Sergei A. Golyshev, Boris I. Skulachev, Sergey Y. Morozov and Andrey G. Solovyev
Plants 2024, 13(18), 2550; https://doi.org/10.3390/plants13182550 - 11 Sep 2024
Abstract
Movement proteins (MPs) encoded by plant viruses are essential for cell-to-cell transport of viral genomes through plasmodesmata. The genome of hibiscus green spot virus contains a module of two MP genes termed ‘binary movement block’ (BMB), encoding the proteins BMB1 and BMB2. Here, [...] Read more.
Movement proteins (MPs) encoded by plant viruses are essential for cell-to-cell transport of viral genomes through plasmodesmata. The genome of hibiscus green spot virus contains a module of two MP genes termed ‘binary movement block’ (BMB), encoding the proteins BMB1 and BMB2. Here, BMB1 is shown to induce a defense response in Nicotiana benthamiana plants that inhibits BMB-dependent virus transport. This response is characterized by the accumulation of reactive oxygen species, callose deposition in the cell wall, and upregulation of 9-LOX expression. However, the BMB1-induced response is inhibited by coexpression with BMB2. Furthermore, BMB1 is found to localize to subnuclear structures, in particular to Cajal bodies, in addition to the cytoplasm. As shown in experiments with a BMB1 mutant, the localization of BMB1 to nuclear substructures enhances BMB-dependent virus transport. Thus, the virus transport mediated by BMB proteins is modulated by (i) a BMB1-induced defense response that inhibits transport, (ii) suppression of the BMB1-induced response by BMB2, and (iii) the nuclear localization of BMB1 that promotes virus transport. Collectively, the data presented demonstrate multiple levels of interactions between viral pathogens and their plant hosts during virus cell-to-cell transport. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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15 pages, 1718 KiB  
Article
Challenges of Salinity Intrusion and Drought Stress on Olive Tree Cultivation on Mljet Island
by Josip Tadić, Gvozden Dumičić, Maja Veršić Bratinčević, Sandra Vitko and Sandra Radić Brkanac
Plants 2024, 13(18), 2549; https://doi.org/10.3390/plants13182549 - 11 Sep 2024
Abstract
Understanding genotype-specific responses to environmental stressors is vital for developing resilience strategies that ensure sustainable olive cultivation and productivity. In this work, cultivar ‘Oblica’ and several olive genotypes from the island of Mljet (Croatia) were exposed to short-term (21 days) salinity and drought [...] Read more.
Understanding genotype-specific responses to environmental stressors is vital for developing resilience strategies that ensure sustainable olive cultivation and productivity. In this work, cultivar ‘Oblica’ and several olive genotypes from the island of Mljet (Croatia) were exposed to short-term (21 days) salinity and drought treatments. In contrast to other olive genotypes, genotype M29 as well as cultivar ‘Oblica’ managed to maintain growth and chlorophyll a levels under salinity stress to the same level as the control. Drought, however, significantly reduced the growth parameters in all olive trees. Cultivar ‘Oblica’ accumulated the greatest amount of Na+ ions in the leaves compared to olive genotypes from the island of Mljet, demonstrating superior resistance by translocating Na+ to leaf vacuoles. The observed reduction in K+ content in the roots of olive trees under all treatments suggests a generalized stress response. On the other hand, effective Ca2+ uptake has been identified as a crucial energy-saving strategy that olive trees use to cope with brief periods of salinity and drought. The proline content and activities of superoxide dismutase (SOD) and guaiacol peroxidase (GPOX) varied among the olive trees, highlighting the importance of antioxidative capacities and stress adaptation mechanisms. According to the obtained results, stress-resistant olive genotypes like ‘Oblica’ and M29 show potential for breeding resilient varieties. Full article
(This article belongs to the Special Issue Physiological Responses of Olive Trees under Different Environmental Conditions)
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13 pages, 1728 KiB  
Article
Whole-Genome Resequencing Identifies SNPs in Sucrose Synthase and Sugar Transporter Genes Associated with Sweetness in Coconut
by Manlika Khongmaluan, Wanchana Aesomnuk, Reajina Dumhai, Mutiara K. Pitaloka, Yong Xiao, Rui Xia, Tippaya Kraithong, Natthaporn Phonsatta, Atikorn Panya, Vinitchan Ruanjaichon, Samart Wanchana and Siwaret Arikit
Plants 2024, 13(18), 2548; https://doi.org/10.3390/plants13182548 - 11 Sep 2024
Abstract
Coconut (Cocos nucifera L.) is an important agricultural commodity with substantial economic and nutritional value, widely used for various products, including coconut water. The sweetness is an important quality trait of coconut water, which is influenced by genetic and environmental factors. In [...] Read more.
Coconut (Cocos nucifera L.) is an important agricultural commodity with substantial economic and nutritional value, widely used for various products, including coconut water. The sweetness is an important quality trait of coconut water, which is influenced by genetic and environmental factors. In this study, we utilized next-generation sequencing to identify genetic variations in the coconut genome associated with the sweetness of coconut water. Whole-genome resequencing of 49 coconut accessions, including diverse germplasm and an F2 population of 81 individuals, revealed ~27 M SNPs and ~1.5 M InDels. Sugar content measured by °Bx was highly variable across all accessions tested, with dwarf varieties generally sweeter. A comprehensive analysis of the sugar profiles revealed that sucrose was the major sugar contributing to sweetness. Allele mining of the 148 genes involved in sugar metabolism and transport and genotype–phenotype association tests revealed two significant SNPs in the hexose carrier protein (Cnu01G018720) and sucrose synthase (Cnu09G011120) genes associated with the higher sugar content in both the germplasm and F2 populations. This research provides valuable insights into the genetic basis of coconut sweetness and offers molecular markers for breeding programs aimed at improving coconut water quality. The identified variants can improve the selection process in breeding high-quality sweet coconut varieties and thus support the economic sustainability of coconut cultivation. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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15 pages, 5095 KiB  
Article
Temperature Dependence and the Effects of Ultraviolet Radiation on the Ultrastructure and Photosynthetic Activity of Carpospores in Sub-Antarctic Red Alga Iridaea cordata (Turner) Bory 1826
by Nelso P. Navarro, Pirjo Huovinen, Jocelyn Jofre and Iván Gómez
Plants 2024, 13(18), 2547; https://doi.org/10.3390/plants13182547 - 11 Sep 2024
Viewed by 49
Abstract
The short-term effects of UV radiation and low temperature on ultrastructure, photosynthetic activity (measured as the maximal photochemical quantum yield of photosystem II: Fv/Fm), chlorophyll-a (Chl-a) contents, and UV-absorbing compounds on the carpospores of Iridaea cordata from [...] Read more.
The short-term effects of UV radiation and low temperature on ultrastructure, photosynthetic activity (measured as the maximal photochemical quantum yield of photosystem II: Fv/Fm), chlorophyll-a (Chl-a) contents, and UV-absorbing compounds on the carpospores of Iridaea cordata from a sub-Antarctic population were investigated. Exposure to both photosynthetically active radiation (PAR) and PAR + UV for 4 h caused ultrastructural modifications in all treatments. Under PAR + UV at 2 °C, a disruption of the chloroplast’s internal organization was observed. Plastoglobuli were often found in carpospores exposed to 2 °C. ‘Electron dense particles’, resembling physodes of brown algae, were detected for the first time in cells exposed to PAR and PAR + UV at 8 °C. Fv/Fm decreased following 4 h exposure at 2 °C under PAR + UV (64%) and PAR (25%). At 8 °C, Fv/Fm declined by 21% only under PAR + UV. The photosynthesis of carpospores previously treated with UV partially recovered after a 4 h exposure under dim light. UV-absorbing compounds were degraded in all radiation and temperature treatments without recovery after a 4 h dim light period. Chl-a did not change, whereas total carotenoids increased under PAR at 8 °C The study indicates that although carpospores of I. cordata exhibit photoprotective mechanisms, UV radiation strongly damages their ultrastructure and physiology, which were exacerbated under low temperatures. Full article
(This article belongs to the Special Issue Advances in Algal Photosynthesis and Phytochemistry)
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28 pages, 8083 KiB  
Article
The Role of Salicylic, Jasmonic Acid and Ethylene in the Development of the Resistance/Susceptibility of Wheat to the SnTox1-Producing Isolate of the Pathogenic Fungus Stagonospora nodorum (Berk.)
by Svetlana Veselova, Tatyana Nuzhnaya and Igor Maksimov
Plants 2024, 13(18), 2546; https://doi.org/10.3390/plants13182546 - 10 Sep 2024
Viewed by 214
Abstract
The SnTox1 effector is a virulence factor of the fungal pathogen Stagonospora nodorum (Berk.), which interacts with the host susceptibility gene Snn1 in a gene-for-gene manner and causes necrosis on the leaves of sensitive wheat genotypes. It is known that salicylic acid [...] Read more.
The SnTox1 effector is a virulence factor of the fungal pathogen Stagonospora nodorum (Berk.), which interacts with the host susceptibility gene Snn1 in a gene-for-gene manner and causes necrosis on the leaves of sensitive wheat genotypes. It is known that salicylic acid (SA), jasmonic acid (JA) and ethylene are the key phytohormones involved in plant immunity. To date, effectors of various pathogens have been discovered that can manipulate plant hormonal pathways and even use hormone crosstalk to promote disease development. However, the role of SnTox1 in manipulating hormonal pathways has not been studied in detail. We studied the redox status and the expression of twelve genes of hormonal pathways and two MAPK genes in six bread wheat cultivars sensitive and insensitive to SnTox1 with or without treatment by SA, JA and ethephon (ethylene-releasing agent) during infection with the SnTox1-producing isolate S. nodorum 1SP. The results showed that SnTox1 controls the antagonism between the SA and JA/ethylene signaling pathways. The SA pathway was involved in the development of susceptibility, and the JA/ethylene pathways were involved in the development of wheat plants resistance to the Sn1SP isolate in the presence of a SnTox1-Snn1 interaction. SnTox1 hijacked the SA pathway to suppress catalase activity, increase hydrogen peroxide content and induce necrosis formation; it simultaneously suppresses the JA and ethylene hormonal pathways by SA. To do this, SnTox1 reprogrammed the expression of the MAPK genes TaMRK3 and TaMRK6 and the TF genes TaWRKY13, TaEIN3 and TaWRKY53b. This study provides new data on the role of SnTox1 in manipulating hormonal pathways and on the role of SA, JA and ethylene in the pathosystem wheat S. nodorum. Full article
(This article belongs to the Special Issue Biochemical Defenses of Plants)
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16 pages, 6417 KiB  
Article
Pleiotropic Quantitative Trait Loci (QTL) Mining for Regulating Wheat Processing Quality- and Yield-Related Traits
by Jie Zhao, Lijing Sun, Mengyun Hu, Qian Liu, Junjie Xu, Liming Mu, Jianbing Wang, Jing Yang, Peinan Wang, Qianying Li, Hui Li and Yingjun Zhang
Plants 2024, 13(18), 2545; https://doi.org/10.3390/plants13182545 - 10 Sep 2024
Viewed by 190
Abstract
To investigate the genetic basis of processing quality- and yield-related traits in bread wheat (Triticum aestivum L., AABBDD), a systematic analysis of wheat processing quality- and yield-related traits based on genome-wide association studies (GWASs) of 285 regional test lines of wheat from [...] Read more.
To investigate the genetic basis of processing quality- and yield-related traits in bread wheat (Triticum aestivum L., AABBDD), a systematic analysis of wheat processing quality- and yield-related traits based on genome-wide association studies (GWASs) of 285 regional test lines of wheat from Hebei province, China, was conducted. A total of 87 quantitative trait loci (QTL), including twenty-one for water absorption (WA), four for wet gluten content, eight for grain protein content, seventeen for dough stability time (DST), thirteen for extension area (EA), twelve for maximum resistance (MR), five for thousand-grain weight (TGW), one for grain length, and six for grain width were identified. These QTL harbored 188 significant single-nucleotide polymorphisms (SNPs). Twenty-five SNPs were simultaneously associated with multiple traits. Notably, the SNP AX-111015470 on chromosome 1A was associated with DST, EA, and MR. SNPs AX-111917292 and AX-109124553 on chromosome 5D were associated with wheat WA and TGW. Most processing quality-related QTL and seven grain yield-related QTL identified in this study were newly discovered. Among the surveyed accessions, 18 rare superior alleles were identified. This study identified significant QTL associated with quality-related and yield-related traits in wheat, and some of them showed pleiotropic effects. This study will facilitate molecular designs that seek to achieve synergistic improvements of wheat quality and yield. Full article
(This article belongs to the Section Plant Molecular Biology)
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22 pages, 6251 KiB  
Article
Importance of Media Composition and Explant Type in Cannabis sativa Tissue Culture
by Rekhamani Das, Tobias Kretzschmar and Jos C. Mieog
Plants 2024, 13(18), 2544; https://doi.org/10.3390/plants13182544 - 10 Sep 2024
Viewed by 173
Abstract
Producing uniform Cannabis sativa (Cannabis) for medicinal/recreational flower production through sexual propagation has been problematic, leading to dominance of clonal propagation from “mother plants” in the cannabinoid industry, which also faces significant limitations. Cannabis tissue culture (TC) methods have been developed to overcome [...] Read more.
Producing uniform Cannabis sativa (Cannabis) for medicinal/recreational flower production through sexual propagation has been problematic, leading to dominance of clonal propagation from “mother plants” in the cannabinoid industry, which also faces significant limitations. Cannabis tissue culture (TC) methods have been developed to overcome these challenges, but the long-term health and maintenance of Cannabis explants in TC have been largely overlooked in previous studies. The current study focused on the development of an efficient and optimized micropropagation protocol covering the entire process, with a specific focus on the health and performance in the multiplication stage. Multiplication media were formulated hormone-free to avoid longer-term vitrification issues, resulting in single-main-shoot cultures rather than multiple-shoot cultures. This instigated the use of stage II explant types different from the standard shoot tips previously used for multiple shoot cultures. Multiplication media were further improved from the basal salt composition via nitrogen and calcium additives. The optimized protocol was used on eight diverse Cannabis cultivars to test its applicability across various genetic backgrounds. Results indicated that the protocol was effective for conservation purposes across all cultivars and achieved good long-term multiplication rates for some but not all. The outcomes of this study mark a significant stride towards an efficient Cannabis TC methodology ready for more comprehensive industrial applications. Full article
(This article belongs to the Special Issue Plant Tissue Culture and Plant Regeneration)
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25 pages, 3555 KiB  
Article
Pomegranate–Quinoa-Based Agroforestry System: An Innovative Strategy to Alleviate Salinity Effects and Enhance Land Use Efficiency in Salt-Affected Semiarid Regions
by Ilham Abidi, Khalid Daoui, Aziz Abouabdillah, Didier Bazile, Abdel Aziz Hassane Sidikou, Loubna Belqadi, Hamid Mahyou and Si Bennasseur Alaoui
Plants 2024, 13(18), 2543; https://doi.org/10.3390/plants13182543 - 10 Sep 2024
Viewed by 195
Abstract
Salinity is a major problem, impeding soil productivity, agricultural sustainability, and food security, particularly in dry regions. This study integrates quinoa, a facultative halophyte, into a pomegranate-based agroforestry with saline irrigation in northeast Morocco. We aim to explore this agroforestry model’s potential in [...] Read more.
Salinity is a major problem, impeding soil productivity, agricultural sustainability, and food security, particularly in dry regions. This study integrates quinoa, a facultative halophyte, into a pomegranate-based agroforestry with saline irrigation in northeast Morocco. We aim to explore this agroforestry model’s potential in mitigating salinity’s effects on quinoa’s agronomic and biochemical traits and evaluate the land equivalent ratio (LER). Field experiments in 2020 and 2021 used a randomized block design with three replicates, including monocropping and agroforestry systems, two salinity levels (1.12 and 10.5 dS m−1), four quinoa genotypes (Titicaca, Puno, ICBA-Q4, ICBA-Q5), and a pomegranate control. Salinity significantly decreased total dry matter (40.5%), root dry matter (50.7%), leaf dry matter (39.2%), and root-to-shoot ratio (7.7%). The impact was more severe in monoculture than in agroforestry, reducing dry matter (47.6% vs. 30.7%), grain yield (46.3% vs. 26.1%), water productivity (47.5% vs. 23.9%), and total sugar (19.2% vs. 5.6%). LER averaged 1.86 to 2.21, indicating 86–121% higher productivity in agroforestry. LER averaged 1.85 at 1.12 dS m−1 and 2.18 at 10.5 dS m−1, reaching 2.21 with pomegranate-ICBA-Q5 combination. Quinoa–pomegranate agroforestry emerges as an innovative strategy, leveraging quinoa’s salt resistance and agroforestry’s potential to mitigate salinity impacts while enhancing land use efficiency. Full article
(This article belongs to the Special Issue Worldwide Evaluations of Quinoa and Amaranth—Biodiversity and Food Security under Climate Change Pressures Volume II)
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20 pages, 6990 KiB  
Article
Multi-Omics Analyses Uncover the Mechanism Underlying Polyploidization-Enhanced Steviol Glycosides Biosynthesis in Stevia rebaudiana
by Juan Liu, Jiaxue Wang, Mingjia Chen, Wenna Meng, Anping Ding, Miao Chen, Rongping Ding, Mingpu Tan and Zengxu Xiang
Plants 2024, 13(18), 2542; https://doi.org/10.3390/plants13182542 - 10 Sep 2024
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Abstract
Stevia rebaudiana (Bertoni) is a valuable sweetener plant whose sweetness primarily derives from steviol glycosides (SGs), especially rebaudioside A (RA). Polyploidization has the potential to enhance the content of active ingredients in medicinal plants, making this strategy a promising avenue for genetic improvement. [...] Read more.
Stevia rebaudiana (Bertoni) is a valuable sweetener plant whose sweetness primarily derives from steviol glycosides (SGs), especially rebaudioside A (RA). Polyploidization has the potential to enhance the content of active ingredients in medicinal plants, making this strategy a promising avenue for genetic improvement. However, the underlying regulatory mechanisms that contribute to the fluctuating SGs content between autotetraploid and diploid stevia remain unclear. In this study, we employed metabolic analysis to identify 916 differentially accumulated metabolites (DAMs), with the majority, specifically terpenoids, flavonoids, and lipids, exhibiting upregulation due to polyploidization. Notably, the content of stevia’s signature metabolite SGs (including RA, steviolbioside, and rebaudioside C), along with their precursor steviol, increased significantly after polyploidization. Furthermore, a comprehensive analysis of the transcriptome and metabolome revealed that the majority of differentially expressed genes (DEGs) involved in the SG-synthesis pathway (ent-KAH, ent-KS1, UGT73E1, UGT74G1, UGT76G1, UGT85C2, and UGT91D2) were upregulated in autotetraploid stevia, and these DEGs exhibited a positive correlation with the polyploidization-enhanced SGs. Additionally, multi-omics network analysis indicated that several transcription factor families (such as five NACs, four WRKYs, three MYBs, eight bHLHs, and three AP2/ERFs), various transporter genes (four ABC transporters, three triose-phosphate transporters, and two sugar efflux transporters for intercellular exchange), as well as microorganisms (including Ceratobasidium and Flavobacterium) were positively correlated with the accumulation of RA and steviol. Overall, our results indicate the presence of a regulatory circuit orchestrated by polyploidization, which recruits beneficial rhizosphere microbes and modulates the expression of genes associated with SG biosynthesis, ultimately enhancing the SG content in stevia. This finding will provide new insights for promoting the propagation and industrial development of stevia. Full article
(This article belongs to the Special Issue Biosynthetic Pathways and Molecular Regulatory Mechanisms of Active Ingredients in Medicinal Plants)
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22 pages, 2456 KiB  
Review
Mechanism of Rice Resistance to Bacterial Leaf Blight via Phytohormones
by Qianqian Zhong, Yuqing Xu and Yuchun Rao
Plants 2024, 13(18), 2541; https://doi.org/10.3390/plants13182541 - 10 Sep 2024
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Abstract
Rice is one of the most important food crops in the world, and its yield restricts global food security. However, various diseases and pests of rice pose a great threat to food security. Among them, bacterial leaf blight (BLB) caused by Xanthomonas oryzae [...] Read more.
Rice is one of the most important food crops in the world, and its yield restricts global food security. However, various diseases and pests of rice pose a great threat to food security. Among them, bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv. oryzae (Xoo) is one of the most serious bacterial diseases affecting rice globally, creating an increasingly urgent need for research in breeding resistant varieties. Phytohormones are widely involved in disease resistance, such as auxin, abscisic acid (ABA), ethylene (ET), jasmonic acid (JA), and salicylic acid (SA). In recent years, breakthroughs have been made in the analysis of their regulatory mechanism in BLB resistance in rice. In this review, a series of achievements of phytohormones in rice BLB resistance in recent years were summarized, the genes involved and their signaling pathways were reviewed, and a breeding strategy combining the phytohormones regulation network with modern breeding techniques was proposed, with the intention of applying this strategy to molecular breeding work and playing a reference role for how to further improve rice resistance. Full article
(This article belongs to the Special Issue Rice Genetics and Molecular Design Breeding)
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14 pages, 2390 KiB  
Article
Water Management Interventions, Organic Fertilization, and Harvest Time in Dry Land in the Biosaline Production of Cactus Pear
by Tarcia Carielle Miranda Dantas Nunes, Gherman Garcia Leal de Araújo, Thieres George Freire da Silva, Tadeu Vinhas Voltolini, Glayciane Costa Gois, Cleyton de Almeida Araújo, Anderson de Moura Zanine, Daniele de Jesus Ferreira, Danillo Marte Pereira, Francisco Naysson de Sousa Santos, Henrique Nunes Parente, Silvia Helena Nogueira Turco, Michelle de Oliveira Maia Parente and Fleming Sena Campos
Plants 2024, 13(18), 2540; https://doi.org/10.3390/plants13182540 - 10 Sep 2024
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Abstract
Brackish water can promote physicochemical changes in the soil. Aiming to mitigate the effect of excess salts in the soil, the use of organic matter promotes restructuring. The aim was to evaluate the productive and nutritional characteristics of cactus pear under different brackish [...] Read more.
Brackish water can promote physicochemical changes in the soil. Aiming to mitigate the effect of excess salts in the soil, the use of organic matter promotes restructuring. The aim was to evaluate the productive and nutritional characteristics of cactus pear under different brackish water depths (ID) and levels of organic matter (OM). A factorial arrangement of 4 × 4 × 4 with four replications was utilized. Plots consisted of ID (0, 12, 20, and 28% reference evapotranspiration—ETo), and subplots were composed of OM levels (0, 15, 30, and 45 t/ha) and days after planting (DAP; 180, 270, 360, and 450 days). The growth, yield, and chemical composition of cactus pear were affected by ID and OM and/or by their interaction. The regular and increasing application of ID from 192 to 456 mm/year and a rainfall of 110 mm/year in cactus pear crops in biosaline systems improves the growth, freshness, dry matter yields, accumulation capacity per unit area, and chemical composition of cactus pear. The increase in OM up to the range from 30 to 45 Mg/ha linearly increases the agronomic performance of cactus pear. Biosaline systems with cactus pear should be adopted with the combined use of regular supplementary ID and OM, measuring at 304 mm/year and 45 Mg/ha, respectively. Full article
(This article belongs to the Section Crop Physiology and Crop Production)
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14 pages, 624 KiB  
Review
Modern Technologies Provide New Opportunities for Somatic Hybridization in the Breeding of Woody Plants
by Shuping Liu, Xiaojie Li, Jiani Zhu, Yihong Jin, Chuizheng Xia, Bingsong Zheng, Cristian Silvestri and Fuqiang Cui
Plants 2024, 13(18), 2539; https://doi.org/10.3390/plants13182539 - 10 Sep 2024
Viewed by 187
Abstract
Advances in cell fusion technology have propelled breeding into the realm of somatic hybridization, enabling the transfer of genetic material independent of sexual reproduction. This has facilitated genome recombination both within and between species. Despite its use in plant breeding for over fifty [...] Read more.
Advances in cell fusion technology have propelled breeding into the realm of somatic hybridization, enabling the transfer of genetic material independent of sexual reproduction. This has facilitated genome recombination both within and between species. Despite its use in plant breeding for over fifty years, somatic hybridization has been limited by cumbersome procedures, such as protoplast isolation, hybridized-cell selection and cultivation, and regeneration, particularly in woody perennial species that are difficult to regenerate. This review summarizes the development of somatic hybridization, explores the challenges and solutions associated with cell fusion technology in woody perennials, and outlines the process of protoplast regeneration. Recent advancements in genome editing and plant cell regeneration present new opportunities for applying somatic hybridization in breeding. We offer a perspective on integrating these emerging technologies to enhance somatic hybridization in woody perennial plants. Full article
(This article belongs to the Special Issue In Vitro Techniques on Plant Propagation and Genetic Improvement)
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14 pages, 3382 KiB  
Article
Characterization of the Regulatory Network under Waterlogging Stress in Soybean Roots via Transcriptome Analysis
by Yo-Han Yoo, Seung-Yeon Cho, Inhye Lee, Namgeol Kim, Seuk-Ki Lee, Kwang-Soo Cho, Eun Young Kim, Ki-Hong Jung and Woo-Jong Hong
Plants 2024, 13(18), 2538; https://doi.org/10.3390/plants13182538 - 10 Sep 2024
Viewed by 199
Abstract
Flooding stress caused by climate change is a serious threat to crop productivity. To enhance our understanding of flooding stress in soybean, we analyzed the transcriptome of the roots of soybean plants after waterlogging treatment for 10 days at the V2 growth stage. [...] Read more.
Flooding stress caused by climate change is a serious threat to crop productivity. To enhance our understanding of flooding stress in soybean, we analyzed the transcriptome of the roots of soybean plants after waterlogging treatment for 10 days at the V2 growth stage. Through RNA sequencing analysis, 870 upregulated and 1129 downregulated differentially expressed genes (DEGs) were identified and characterized using Gene Ontology (GO) and MapMan software (version 3.6.0RC1). In the functional classification analysis, “alcohol biosynthetic process” was the most significantly enriched GO term in downregulated DEGs, and phytohormone-related genes such as ABA, cytokinin, and gibberellin were upregulated. Among the transcription factors (TFs) in DEGs, AP2/ERFs were the most abundant. Furthermore, our DEGs encompassed eight soybean orthologs from Arabidopsis and rice, such as 1-aminocyclopropane-1-carboxylate oxidase. Along with a co-functional network consisting of the TF and orthologs, the expression changes of those genes were tested in a waterlogging-resistant cultivar, PI567343. These findings contribute to the identification of candidate genes for waterlogging tolerance in soybean, which can enhance our understanding of waterlogging tolerance. Full article
(This article belongs to the Special Issue Genetic Research on Soybean Response to Adversity Stress and Disease Stress)
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15 pages, 6228 KiB  
Article
Genome-Wide Characterization and Expression Analysis of CsPALs in Cucumber (Cucumis sativus L.) Reveal Their Potential Roles in Abiotic Stress and Aphid Stress Tolerance
by Jieni Gu, Hamza Sohail, Lei Qiu, Chaoyan Chen, Haoyu Yue, Ziyi Li, Xiaodong Yang and Lili Zhang
Plants 2024, 13(18), 2537; https://doi.org/10.3390/plants13182537 - 10 Sep 2024
Viewed by 305
Abstract
Phenylalanine ammonia lyase (PAL) is a pivotal enzyme in the phenylalanine metabolic pathway in plants and has a crucial role in the plant’s response to environmental stress. Although the PAL family has been widely studied in many plant species, limited is known about [...] Read more.
Phenylalanine ammonia lyase (PAL) is a pivotal enzyme in the phenylalanine metabolic pathway in plants and has a crucial role in the plant’s response to environmental stress. Although the PAL family has been widely studied in many plant species, limited is known about its particular role in cucumbers under stress. We investigated the physicochemical properties, gene structure, gene duplication events, conserved motifs, cis-acting elements, protein interaction networks, stress-related transcriptome data, and quantitatively validated key stress-related genes. The main results indicated that 15 PAL genes were grouped into four clades: I, II, and III when arranged in a phylogenetic tree of PAL genes in angiosperms. The analysis of the promoter sequence revealed the presence of multiple cis-acting elements related to hormones and stress responses in the cucumber PAL genes (CsPALs). The analysis of protein interaction networks suggested that CsPAL1 interacts with eight other members of the PAL family through CsELI5 and CsHISNA, and directly interacts with multiple proteins in the 4CL family. Further investigation into the expression patterns of CsPAL genes in different tissues and under various stress treatments (NaCl, Cu2+, Zn2+, PEG6000, aphids) demonstrated significant differential expression of CsPALs across cucumber tissues. In summary, our characterization of the CsPAL family offers valuable insights and provides important clues regarding the molecular mechanisms of CsPALs in managing abiotic and biotic stress interactions in cucumbers. Full article
(This article belongs to the Section Plant Molecular Biology)
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