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  • 4.5
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  • 8.1
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    Acceptance to Publication

Metabolites

Metabolites is an international, peer-reviewed, open access journal of metabolism and metabolomics, published monthly online by MDPI.
  • Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
  • High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, PMC, Embase, CAPlus / SciFinder, and other databases.
  • Journal Rank: JCR - Q2 (Biochemistry and Molecular Biology) / CiteScore - Q1 (Endocrinology, Diabetes and Metabolism)
  • Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 12.6 days after submission; acceptance to publication is undertaken in 3.7 days (median values for papers published in this journal in the first half of 2026).
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All Articles (7,061)

  • Article
  • Open Access

Background: Fanhuncao, derived from Senecio cannabifolius Less. and its variety Senecio cannabifolius var. integrifolius (Koidz.) Kitag., is frequently adulterated with morphologically similar Senecio nemorensis L. var. dentatus (Kitam.) H. Koyama. Traditional identification methods, including morphological observation, microscopic examination and thin-layer chromatography (TLC), rely on expert experience and a limited set of reference standards, which fail to provide sufficient chemical evidence for discriminating these closely related taxa. In this study, to investigate the differences between Fanhuncao and morphologically similar species, we aimed to screen specific chemical markers and establish an objective authentication strategy for Fanhuncao. Methods: We collected leaf samples of Senecio cannabifolius Less. (M), Senecio cannabifolius Less. var. integrifolius (Koidz.) Kitag. (Q) and Senecio nemorensis L. var. dentatus (Kitam.) H. Koyama. (H). A widely targeted metabolomics approach was employed to characterize the metabolic profiles of the three Senecio taxa, and we evaluated its potential for authenticating Fanhuncao. Results: In total, 2443 metabolites were annotated, and 52, 346 and 302 were differentially accumulated in Q vs. M, H vs. M and H vs. Q, respectively. Principal component analysis (PCA) demonstrated clear separation among the three groups, and 15 differentially accumulated metabolites (DAMs) were identified (p < 0.05, FC > 2, FC < 0.5, and VIP > 1). Of these, kaempferol-3-O-galactoside (Trifolin) and dehydrodiconiferyl alcohol 4-O-β-D-glucopyranoside (DCG) exhibited significant differences among the groups. Trifolin and DCG were 11-fold and 25-fold lower in H relative to M and 5.6-fold and 7.7-fold lower in H relative to Q, respectively. Conclusions: In this work, we provide candidate chemical markers and a metabolomic strategy to address the limitations of conventional authentication techniques for the rapid and objective discrimination of Fanhuncao and its adulterant. These findings indicate that widely targeted metabolomics represents a promising strategy for the authentication and quality evaluation of Fanhuncao medicinal materials.

Metabolites

13 November 2026

Leaf tissues of M, Q and H collected in the third year. (A) Senecio cannabifolius Less.; (B) Senecio cannabifolius Less. var. integrifolius (Koidz.) Kitag.; (C) Senecio nemorensis L. var. dentatus (Kitam.) H. Koyama.
  • Article
  • Open Access

Background/Objectives: Glutamine supplementation has been investigated across nutritional, clinical and preclinical settings, but the development and thematic structure of this literature have not been comprehensively mapped. This bibliometric study examined publication trends, leading contributors, citation patterns, international collaboration and thematic evolution. Methods: The Web of Science Core Collection was searched on 20 August 2026 using a title-based strategy targeting intervention-oriented glutamine research. The corpus comprised 1321 articles and reviews published during 1943–2025. Analyses were conducted in Python, including country co-authorship networks and author–keyword mapping. Co-occurrence and temporal analyses used author keywords from 925 publications (70.0%), with a 15-occurrence threshold for co-occurrence mapping and six thematic domains examined across four periods (1991–2025). Results: Publication output increased from the 1990s and peaked in 2014. The corpus spanned 512 sources and accumulated 42,356 citations (h-index 87). The United States, China and Brazil contributed the most publications, while the University of São Paulo was the leading institution. Clinical nutrition and critical illness, amino-acid metabolism, oxidative and inflammatory responses, intestinal function, exercise and oncology-related applications were represented. Clinical nutrition and critical illness decreased from 34.0% to 10.6% of keyword-bearing publications between the earliest and latest periods, while oxidative, inflammatory and immune responses increased from 16.0% to 21.1%. International co-authorship occurred in 17.3% of publications. Conclusions: The results demonstrate changing thematic representation and identify major contributors and collaboration patterns within intervention-oriented glutamine research. These descriptive findings do not establish clinical efficacy or the presence of substantive evidence gaps.

Metabolites

12 November 2026

Annual scientific production of glutamine-related publications from 1943 to 2025.
  • Article
  • Open Access

Objectives: The objective of this study was to compare the effects of time-restricted eating (TRE) alone and TRE combined with resistance exercise on inflammatory responses and oxidative stress levels in adults with obesity. Methods: Sixty adults who met the diagnostic criteria for obesity were randomly assigned to a control group (n = 20), a TRE group (n = 20), or a TRE plus resistance exercise group (n = 20). The TRE group underwent a 12-week TRE intervention, with an eating window from 08:00 to 16:00. Dietary composition was not modified, and total daily energy intake was maintained at baseline levels. During the remaining hours, participants strictly abstained from consuming energy-containing foods and beverages. In addition to the same TRE protocol, the combined intervention group performed elastic-band resistance exercise three times per week for 30–45 min per session. Those in the control group were instructed to maintain their usual sedentary behavior patterns and dietary habits, including food types and quantities, and to strictly avoid regular physical exercise throughout the trial. In all three groups, inflammatory markers (TNF-α, IL-4, IL-6, IL-10, sICAM-1, CRP, and IFN-γ) and oxidative stress markers (MDA, SOD, 8-OHdG, CAT, and TAC) were assessed before the intervention and after its completion. Changes in these markers were compared across the three groups, with TNF-α and MDA designated as the primary outcome measures. After completion of the trial, three participants were excluded from each group, leaving 17 participants per group for the final data analysis. Results: Before the intervention, no significant between-group differences were observed in TNF-α, IL-4, IL-6, IL-10, sICAM-1, CRP, IFN-γ, MDA, SOD, 8-OHdG, CAT, TAC, or energy intake (all p > 0.05). Compared with their respective baseline values, the TRE group showed significant reductions in TNF-α, MDA, and 8-OHdG levels and a significant increase in TAC levels (all p < 0.05). The combined intervention group showed significant reductions in TNF-α, IL-6, sICAM-1, MDA, and 8-OHdG levels and significant increases in IL-10, IL-4, SOD, and TAC levels (all p < 0.05). After the intervention, compared with the control group, the TRE and combined intervention groups had significantly lower levels of TNF-α, IL-6, sICAM-1, MDA, and 8-OHdG (all p < 0.05), whereas the combined intervention group had significantly higher levels of IL-10, IL-4, SOD, and TAC (all p < 0.05). In addition, IL-4 and SOD levels were significantly higher in the combined intervention group than in the TRE group after the intervention (both p < 0.05). No significant within- or between-group differences were observed for CRP, IFN-γ, CAT, or energy intake (all p > 0.05). Conclusions: TRE alone and TRE combined with elastic-band resistance exercise improved inflammatory responses and oxidative stress levels in people with obesity after 12 weeks; however, the overall effects of the two interventions did not differ significantly.

Metabolites

12 November 2026

Experimental flowchart of the study.
  • Article
  • Open Access

Background: Pneumonia is driven by disordered immune inflammation dominated by dysregulated macrophage polarization. Peimine, the major bioactive steroidal alkaloid of Fritillariae Bulbus, exerts anti-inflammatory and immunomodulatory effects, whereas its direct targets and the metabolic routes through which it may influence macrophage polarization in pneumonia remain unclear. Objectives: This paper explores, and prioritizes for experimental testing, how peimine may regulate macrophage polarization in pneumonia, by combining public transcriptomic data with explainable machine learning. Methods: Potential human protein targets of peimine were predicted from three independent databases and pooled as a union. Two GEO datasets (GSE42830, GSE65682; 80 controls and 200 patients) were corrected for batch effects, screened for pneumonia DEGs and deconvoluted with CIBERSORT to estimate M0/M1/M2 macrophage fractions. WGCNA identified macrophage-related modules and hub genes, which were intersected with peimine targets and DEGs. Ten shared genes entered 113 classifiers under a 7:3 stratified split, with normalization and feature selection fitted inside the training data; SHAP was used to rank features of a gradient-boosting surrogate model, and AutoDock Vina docking was used to generate structural hypotheses. Results: A total of 238 peimine targets and 2991 pneumonia DEGs were obtained, and the estimated M0, M1 and M2 fractions were all higher in pneumonia samples. The brown module was positively associated with M0 (r = 0.68) and M2 (r = 0.28) fractions and contained 4 M0-related and 6 M2-related shared genes, whereas no M1-related shared gene was identified. The RF + Lasso hybrid model achieved a test-set AUC of 0.999 in an internal random split. SHAP ranked UGCG, MMP8 and KLF5 highest among the M0 features and CCR3, ITK, S1PR5 and PRKCQ highest among the M2 features; all seven were differentially expressed, with single-gene AUCs of 0.763–0.983. Docking predicted favorable binding of peimine to CCR3, ITK, S1PR5, PRKCQ and MMP8 (estimated binding energies −10.6 to −7.6 kcal/mol), and pathway annotation linked UGCG and S1PR5 to sphingolipid and glucosylceramide metabolism. Conclusions: These computational analyses do not demonstrate efficacy; they generate the testable hypothesis that peimine may act through two complementary modules, a CCR3/ITK/S1PR5/PRKCQ module associated with M2-like programmes and an MMP8/UGCG/KLF5 module associated with M0-derived inflammation and matrix remodeling, with a possible sphingolipid metabolic link. Experimental validation is required.

Metabolites

12 November 2026

Analysis of differentially expressed genes in pneumonia. (A) PCA before ComBat correction, samples clustered by dataset batch (GSE42830/GSE65682) with significant batch effect; (B) PCA after ComBat correction, dataset-associated separation removed and samples grouped by disease status; (C) volcano plot showing distribution of DEGs between Pneumonia and Control groups, red for upregulated genes, blue for downregulated genes, gray for non-significant genes; (D) z-score standardized clustering heatmap of Top 50 DEGs, rows represent genes, columns represent samples, color indicates expression level (red: high expression, blue: low expression), top annotation bars indicate group (purple: Control; green: Pneumonia) and batch information. In (A,B), the dashed lines indicate the 95% confidence ellipses of the Control and Pneumonia groups.

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Metabolites - ISSN 2218-1989